Wall clock time and date at job start Mon Mar 30 2020 17:55:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46847 * 111.00065 * 2 1 4 4 C 1.53036 * 109.52487 * 185.83561 * 3 2 1 5 5 C 1.53122 * 109.28039 * 300.82074 * 4 3 2 6 6 C 1.52996 * 109.52174 * 177.55663 * 5 4 3 7 7 C 1.50702 * 109.47129 * 65.32211 * 6 5 4 8 8 O 1.21282 * 119.99697 * 359.97438 * 7 6 5 9 9 N 1.34771 * 119.99905 * 180.02562 * 7 6 5 10 10 C 1.46506 * 119.99887 * 179.97438 * 9 7 6 11 11 C 1.50697 * 109.46931 * 179.97438 * 10 9 7 12 12 H 1.08001 * 120.00639 * 0.02562 * 11 10 9 13 13 C 1.37876 * 119.99689 * 179.97438 * 11 10 9 14 14 N 1.31514 * 120.00357 * 359.97438 * 13 11 10 15 15 Si 1.86807 * 119.99987 * 180.02562 * 13 11 10 16 16 H 1.48502 * 109.47053 * 89.99797 * 15 13 11 17 17 H 1.48494 * 109.47065 * 210.00034 * 15 13 11 18 18 H 1.48498 * 109.47078 * 330.00284 * 15 13 11 19 19 C 1.53123 * 109.15961 * 57.65379 * 5 4 3 20 20 C 1.46844 * 110.99853 * 124.20646 * 2 1 3 21 21 H 1.09002 * 109.47401 * 295.79144 * 1 2 3 22 22 H 1.09001 * 109.46874 * 175.79157 * 1 2 3 23 23 H 1.09004 * 109.46970 * 55.79290 * 1 2 3 24 24 H 1.09005 * 109.46161 * 305.85426 * 3 2 1 25 25 H 1.09006 * 109.46014 * 65.82215 * 3 2 1 26 26 H 1.08995 * 109.50452 * 180.87530 * 4 3 2 27 27 H 1.08997 * 109.53423 * 60.78138 * 4 3 2 28 28 H 1.08995 * 109.52195 * 297.75126 * 5 4 3 29 29 H 1.09004 * 109.46994 * 185.31369 * 6 5 4 30 30 H 1.08994 * 109.47428 * 305.31237 * 6 5 4 31 31 H 0.97001 * 120.00467 * 359.97438 * 9 7 6 32 32 H 1.08996 * 109.47035 * 299.99465 * 10 9 7 33 33 H 1.08995 * 109.46927 * 60.00036 * 10 9 7 34 34 H 0.97004 * 119.99915 * 179.97438 * 14 13 11 35 35 H 1.09001 * 109.50326 * 182.41022 * 19 5 4 36 36 H 1.08996 * 109.53714 * 62.30612 * 19 5 4 37 37 H 1.09005 * 109.46673 * 294.18102 * 20 2 1 38 38 H 1.09003 * 109.46587 * 54.14643 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3709 0.0000 4 6 3.5182 1.3342 -0.1467 5 6 4.1188 0.5370 1.0145 6 6 5.6361 0.4450 0.8407 7 6 6.2395 1.8210 0.9573 8 8 5.5260 2.7808 1.1591 9 7 7.5717 1.9851 0.8363 10 6 8.1582 3.3229 0.9491 11 6 9.6526 3.2322 0.7780 12 1 10.1190 2.2740 0.6023 13 6 10.4246 4.3726 0.8446 14 7 9.8567 5.5397 1.0571 15 14 12.2771 4.2604 0.6318 16 1 12.6203 4.4112 -0.8051 17 1 12.9314 5.3404 1.4131 18 1 12.7521 2.9402 1.1181 19 6 3.5182 -0.8715 1.0210 20 6 1.9952 -0.7707 1.1338 21 1 -0.3634 0.4471 0.9253 22 1 -0.3633 -1.0249 -0.0754 23 1 -0.3633 0.5778 -0.8499 24 1 1.5634 1.9257 -0.8330 25 1 1.7324 1.8608 0.9376 26 1 3.9099 2.3512 -0.1310 27 1 3.7820 0.8572 -1.0905 28 1 3.8886 1.0355 1.9561 29 1 6.0519 -0.2007 1.6142 30 1 5.8648 0.0298 -0.1408 31 1 8.1422 1.2175 0.6745 32 1 7.7421 3.9684 0.1757 33 1 7.9298 3.7381 1.9307 34 1 10.3999 6.3420 1.1043 35 1 3.9098 -1.4302 1.8710 36 1 3.7814 -1.3842 0.0959 37 1 1.7324 -0.2708 2.0661 38 1 1.5634 -1.7715 1.1243 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000487509541.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:55:28 Heat of formation + Delta-G solvation = -80.765335 kcal Electronic energy + Delta-G solvation = -17237.366957 eV Core-core repulsion = 14498.643451 eV Total energy + Delta-G solvation = -2738.723506 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.91236 -39.50873 -36.21510 -35.27272 -34.33342 -31.73556 -30.76450 -28.95582 -26.39947 -24.59226 -24.06682 -22.82967 -21.22585 -20.58291 -18.85946 -17.43630 -17.08378 -16.64781 -16.43489 -16.06662 -15.98216 -15.44919 -15.07362 -14.81193 -14.17879 -14.05169 -13.87748 -13.69291 -13.26385 -13.08837 -12.86498 -12.75891 -12.61315 -12.35225 -12.22889 -12.06915 -11.59618 -11.48465 -11.44266 -11.18370 -10.80093 -10.51078 -9.77342 -9.29534 -8.29520 -6.46278 1.42788 1.45345 1.56620 1.84815 2.33428 2.66242 3.02824 3.05257 3.76549 3.86434 3.90384 4.15311 4.26327 4.35743 4.46247 4.53954 4.62746 4.68614 4.69771 4.81402 4.90766 4.94170 4.98794 5.01329 5.13430 5.15494 5.22675 5.24974 5.38128 5.51652 5.54313 5.73497 5.86074 6.11253 6.18023 6.65661 6.96850 7.23715 7.56519 8.82734 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.066847 B = 0.003952 C = 0.003816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 418.765523 B = 7082.454991 C = 7335.565506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.552 5.552 3 C 0.062 3.938 4 C -0.114 4.114 5 C -0.069 4.069 6 C -0.122 4.122 7 C 0.491 3.509 8 O -0.599 6.599 9 N -0.712 5.712 10 C 0.266 3.734 11 C -0.556 4.556 12 H 0.084 0.916 13 C 0.002 3.998 14 N -0.932 5.932 15 Si 0.986 3.014 16 H -0.270 1.270 17 H -0.284 1.284 18 H -0.255 1.255 19 C -0.104 4.104 20 C 0.053 3.947 21 H 0.022 0.978 22 H 0.083 0.917 23 H 0.070 0.930 24 H 0.075 0.925 25 H 0.019 0.981 26 H 0.051 0.949 27 H 0.069 0.931 28 H 0.049 0.951 29 H 0.118 0.882 30 H 0.115 0.885 31 H 0.408 0.592 32 H -0.015 1.015 33 H -0.015 1.015 34 H 0.268 0.732 35 H 0.087 0.913 36 H 0.081 0.919 37 H 0.024 0.976 38 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.028 -16.362 -1.579 20.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.277 5.277 3 C -0.066 4.066 4 C -0.152 4.152 5 C -0.089 4.089 6 C -0.161 4.161 7 C 0.279 3.721 8 O -0.481 6.481 9 N -0.362 5.362 10 C 0.143 3.857 11 C -0.594 4.594 12 H 0.102 0.898 13 C -0.197 4.197 14 N -0.571 5.571 15 Si 0.809 3.191 16 H -0.196 1.196 17 H -0.210 1.210 18 H -0.178 1.178 19 C -0.141 4.141 20 C -0.074 4.074 21 H 0.040 0.960 22 H 0.101 0.899 23 H 0.089 0.911 24 H 0.093 0.907 25 H 0.037 0.963 26 H 0.070 0.930 27 H 0.087 0.913 28 H 0.068 0.932 29 H 0.136 0.864 30 H 0.133 0.867 31 H 0.244 0.756 32 H 0.003 0.997 33 H 0.003 0.997 34 H 0.077 0.923 35 H 0.105 0.895 36 H 0.099 0.901 37 H 0.042 0.958 38 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -13.331 -15.727 -1.841 20.699 hybrid contribution 0.740 1.071 0.717 1.486 sum -12.591 -14.656 -1.124 19.354 Atomic orbital electron populations 1.22415 0.86370 1.03106 1.00542 1.62004 1.08511 1.13272 1.43867 1.21994 0.95389 0.89438 0.99775 1.21669 0.94417 1.00478 0.98658 1.20899 0.92633 0.97026 0.98294 1.21754 0.96131 0.92009 1.06237 1.21672 0.82054 0.92799 0.75591 1.90602 1.61400 1.44629 1.51461 1.46268 1.07454 1.11129 1.71321 1.18499 0.93087 0.80331 0.93794 1.21643 0.91417 0.95207 1.51138 0.89794 1.26095 1.05221 0.94459 0.93964 1.70145 1.38368 0.99417 1.49149 0.85145 0.77066 0.78531 0.78403 1.19582 1.20981 1.17822 1.21630 0.93960 0.94812 1.03723 1.22170 0.95857 0.98667 0.90739 0.95962 0.89854 0.91089 0.90674 0.96300 0.92996 0.91255 0.93219 0.86376 0.86723 0.75646 0.99728 0.99746 0.92276 0.89455 0.90069 0.95767 0.88777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.39 9.59 127.69 1.22 1.61 16 2 N -0.55 -11.67 4.91 -922.54 -4.53 -16.21 16 3 C 0.06 1.57 5.46 86.33 0.47 2.04 16 4 C -0.11 -3.29 5.09 30.65 0.16 -3.13 16 5 C -0.07 -1.79 1.90 -10.71 -0.02 -1.81 16 6 C -0.12 -3.13 5.18 29.85 0.15 -2.98 16 7 C 0.49 19.50 7.56 87.66 0.66 20.16 16 8 O -0.60 -29.49 13.99 -3.03 -0.04 -29.53 16 9 N -0.71 -30.29 5.55 -466.80 -2.59 -32.88 16 10 C 0.27 14.84 5.43 85.63 0.46 15.30 16 11 C -0.56 -30.59 9.28 25.60 0.24 -30.35 16 12 H 0.08 4.15 7.60 -2.91 -0.02 4.13 16 13 C 0.00 0.11 5.46 84.65 0.46 0.57 16 14 N -0.93 -56.90 13.29 21.45 0.28 -56.61 16 15 Si 0.99 42.55 29.54 68.60 2.03 44.58 16 16 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 17 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 18 H -0.25 -10.18 7.11 99.48 0.71 -9.47 16 19 C -0.10 -1.90 5.38 30.65 0.16 -1.73 16 20 C 0.05 0.99 5.46 86.33 0.47 1.46 16 21 H 0.02 0.37 8.14 -2.39 -0.02 0.35 16 22 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 23 H 0.07 1.10 8.09 -2.38 -0.02 1.08 16 24 H 0.07 1.80 8.09 -2.38 -0.02 1.78 16 25 H 0.02 0.52 8.14 -2.38 -0.02 0.50 16 26 H 0.05 1.91 6.04 -2.39 -0.01 1.89 16 27 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 28 H 0.05 1.53 7.95 -2.39 -0.02 1.51 16 29 H 0.12 2.37 8.14 -2.38 -0.02 2.35 16 30 H 0.11 2.42 8.14 -2.39 -0.02 2.40 16 31 H 0.41 14.21 8.32 -92.71 -0.77 13.44 16 32 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 33 H -0.02 -0.97 8.14 -2.39 -0.02 -0.99 16 34 H 0.27 15.27 8.31 -92.70 -0.77 14.50 16 35 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.02 0.49 8.14 -2.38 -0.02 0.47 16 38 H 0.09 1.35 8.12 -2.39 -0.02 1.33 16 Total: -1.00 -71.56 306.47 -0.15 -71.71 By element: Atomic # 1 Polarization: 17.54 SS G_CDS: 0.25 Total: 17.79 kcal Atomic # 6 Polarization: -3.30 SS G_CDS: 4.45 Total: 1.15 kcal Atomic # 7 Polarization: -98.86 SS G_CDS: -6.84 Total: -105.70 kcal Atomic # 8 Polarization: -29.49 SS G_CDS: -0.04 Total: -29.53 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 2.03 Total: 44.58 kcal Total: -71.56 -0.15 -71.71 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000487509541.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.053 kcal (2) G-P(sol) polarization free energy of solvation -71.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds