Wall clock time and date at job start Mon Mar 30 2020 17:55:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53002 * 109.46766 * 2 1 4 4 H 1.09000 * 109.46797 * 176.23879 * 3 2 1 5 5 C 1.50705 * 109.47107 * 56.24102 * 3 2 1 6 6 H 1.07998 * 119.99886 * 244.92257 * 5 3 2 7 7 C 1.37881 * 120.00024 * 64.92088 * 5 3 2 8 8 N 1.31520 * 119.99625 * 9.67023 * 7 5 3 9 9 Si 1.86793 * 119.99938 * 189.66060 * 7 5 3 10 10 H 1.48501 * 109.47095 * 180.02562 * 9 7 5 11 11 H 1.48494 * 109.47503 * 300.00332 * 9 7 5 12 12 H 1.48500 * 109.47030 * 60.00649 * 9 7 5 13 13 N 1.46892 * 109.47270 * 296.23837 * 3 2 1 14 14 C 1.46900 * 111.00269 * 276.71744 * 13 3 2 15 15 C 1.52994 * 109.47400 * 185.36573 * 14 13 3 16 16 C 1.53000 * 109.47222 * 184.99466 * 15 14 13 17 17 H 1.09005 * 110.36634 * 57.68341 * 16 15 14 18 18 C 1.54373 * 110.41186 * 295.33301 * 16 15 14 19 19 C 1.54263 * 105.06170 * 217.36743 * 18 16 15 20 20 C 1.54379 * 105.05835 * 0.02562 * 19 18 16 21 21 N 1.48566 * 110.40993 * 180.02562 * 16 15 14 22 22 C 1.46898 * 110.99690 * 277.81564 * 21 16 15 23 23 H 1.08999 * 109.47351 * 305.36118 * 1 2 3 24 24 H 1.09002 * 109.46872 * 65.36197 * 1 2 3 25 25 H 1.08997 * 109.47083 * 185.35306 * 1 2 3 26 26 H 1.08996 * 109.47050 * 240.00092 * 2 1 3 27 27 H 1.08998 * 109.46828 * 119.99848 * 2 1 3 28 28 H 0.96991 * 120.00343 * 357.33319 * 8 7 5 29 29 H 1.00898 * 111.00484 * 40.67739 * 13 3 2 30 30 H 1.08997 * 109.47352 * 305.37482 * 14 13 3 31 31 H 1.08999 * 109.46634 * 65.36986 * 14 13 3 32 32 H 1.09004 * 109.47568 * 305.00092 * 15 14 13 33 33 H 1.09004 * 109.46826 * 64.99833 * 15 14 13 34 34 H 1.08998 * 110.32958 * 336.26118 * 18 16 15 35 35 H 1.08998 * 110.32286 * 98.37338 * 18 16 15 36 36 H 1.09000 * 110.32575 * 118.89547 * 19 18 16 37 37 H 1.09007 * 110.32512 * 241.10701 * 19 18 16 38 38 H 1.08997 * 110.41152 * 142.63276 * 20 19 18 39 39 H 1.08998 * 110.41102 * 264.95483 * 20 19 18 40 40 H 1.09006 * 109.47279 * 65.09461 * 22 21 16 41 41 H 1.09005 * 109.47027 * 185.08931 * 22 21 16 42 42 H 1.08999 * 109.47974 * 305.09081 * 22 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1279 1.4433 0.0674 5 6 1.4630 2.1793 1.1813 6 1 0.7860 3.0059 1.0239 7 6 1.7993 1.7980 2.4629 8 7 2.7626 0.9239 2.6575 9 14 0.8871 2.5231 3.9228 10 1 1.4349 1.9549 5.1807 11 1 1.0584 3.9981 3.9307 12 1 -0.5569 2.1931 3.8177 13 7 1.6259 2.1083 -1.2422 14 6 2.5566 1.8050 -2.3376 15 6 2.1709 2.6185 -3.5746 16 6 3.0610 2.2116 -4.7505 17 1 2.9689 1.1428 -4.9440 18 6 4.5322 2.5823 -4.4657 19 6 5.0986 3.0470 -5.8232 20 6 3.9217 2.9186 -6.8140 21 7 2.7041 2.9904 -5.9643 22 6 1.5460 2.3989 -6.6476 23 1 -0.3634 0.5947 0.8381 24 1 -0.3633 0.4284 -0.9341 25 1 -0.3633 -1.0232 0.0959 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 3.2102 0.5185 1.8985 29 1 0.6810 1.8558 -1.4902 30 1 3.5711 2.0636 -2.0344 31 1 2.5074 0.7417 -2.5721 32 1 1.1275 2.4264 -3.8250 33 1 2.3052 3.6803 -3.3676 34 1 4.5847 3.3911 -3.7368 35 1 5.0788 1.7115 -4.1039 36 1 5.4290 4.0839 -5.7607 37 1 5.9237 2.4038 -6.1294 38 1 3.9360 3.7405 -7.5298 39 1 3.9654 1.9617 -7.3341 40 1 0.6680 2.4741 -6.0059 41 1 1.3618 2.9336 -7.5794 42 1 1.7487 1.3501 -6.8645 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000565168310.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:55:41 Heat of formation + Delta-G solvation = -14.134345 kcal Electronic energy + Delta-G solvation = -17851.975060 eV Core-core repulsion = 15251.973985 eV Total energy + Delta-G solvation = -2600.001075 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.23015 -36.82222 -33.65835 -32.22256 -31.49510 -29.94302 -26.82643 -25.73300 -24.80975 -23.49493 -22.06484 -20.96244 -19.80270 -19.49795 -16.73455 -16.10543 -15.54073 -15.07569 -14.34843 -14.12227 -13.84725 -13.77065 -13.58685 -13.12951 -12.74454 -12.52862 -12.39988 -11.89375 -11.70241 -11.40874 -11.27294 -11.23768 -11.08838 -10.76367 -10.73200 -10.51981 -10.39862 -10.13912 -10.00794 -9.97057 -9.82694 -8.64826 -8.58047 -8.15347 -7.24937 -6.27073 -3.93894 3.48833 3.49994 3.68730 3.87942 4.55076 4.58016 4.66756 4.92009 5.06272 5.20336 5.28753 5.33139 5.41603 5.43663 5.51905 5.62842 5.69670 5.75625 5.80239 5.86682 5.97478 6.04099 6.08987 6.12411 6.17316 6.20805 6.33588 6.54018 6.57246 6.69937 6.82762 6.97233 7.02631 7.09586 7.27108 7.33047 7.99304 8.33040 8.52320 8.71075 8.98023 9.74024 11.09749 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.038089 B = 0.004663 C = 0.004497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.952279 B = 6003.677577 C = 6225.257149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.151 4.151 3 C 0.204 3.796 4 H 0.024 0.976 5 C -0.571 4.571 6 H 0.055 0.945 7 C 0.017 3.983 8 N -0.916 5.916 9 Si 1.066 2.934 10 H -0.285 1.285 11 H -0.289 1.289 12 H -0.289 1.289 13 N -0.677 5.677 14 C 0.061 3.939 15 C -0.097 4.097 16 C 0.064 3.936 17 H 0.048 0.952 18 C -0.121 4.121 19 C -0.125 4.125 20 C 0.032 3.968 21 N -0.512 5.512 22 C 0.014 3.986 23 H 0.073 0.927 24 H 0.032 0.968 25 H 0.027 0.973 26 H 0.019 0.981 27 H 0.065 0.935 28 H 0.268 0.732 29 H 0.327 0.673 30 H 0.064 0.936 31 H 0.012 0.988 32 H 0.055 0.945 33 H 0.076 0.924 34 H 0.078 0.922 35 H 0.067 0.933 36 H 0.071 0.929 37 H 0.065 0.935 38 H 0.078 0.922 39 H 0.040 0.960 40 H 0.071 0.929 41 H 0.066 0.934 42 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.815 0.901 -16.789 16.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.191 4.191 3 C 0.096 3.904 4 H 0.042 0.958 5 C -0.610 4.610 6 H 0.073 0.927 7 C -0.186 4.186 8 N -0.553 5.553 9 Si 0.895 3.105 10 H -0.210 1.210 11 H -0.215 1.215 12 H -0.215 1.215 13 N -0.307 5.307 14 C -0.070 4.070 15 C -0.135 4.135 16 C -0.044 4.044 17 H 0.066 0.934 18 C -0.159 4.159 19 C -0.163 4.163 20 C -0.096 4.096 21 N -0.236 5.236 22 C -0.134 4.134 23 H 0.092 0.908 24 H 0.051 0.949 25 H 0.046 0.954 26 H 0.038 0.962 27 H 0.084 0.916 28 H 0.079 0.921 29 H 0.145 0.855 30 H 0.082 0.918 31 H 0.030 0.970 32 H 0.074 0.926 33 H 0.095 0.905 34 H 0.097 0.903 35 H 0.086 0.914 36 H 0.090 0.910 37 H 0.084 0.916 38 H 0.096 0.904 39 H 0.058 0.942 40 H 0.090 0.910 41 H 0.085 0.915 42 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 0.900 2.062 -14.844 15.014 hybrid contribution -0.004 -1.957 -2.217 2.957 sum 0.897 0.105 -17.062 17.085 Atomic orbital electron populations 1.21596 0.96813 0.99116 1.01369 1.22220 0.96111 1.01463 0.99266 1.19323 0.95320 0.88240 0.87562 0.95799 1.21819 1.30590 1.17611 0.90978 0.92681 1.25713 0.96065 0.96585 1.00252 1.70813 1.20768 1.28845 1.34857 0.83580 0.75504 0.75721 0.75719 1.21033 1.21526 1.21550 1.60700 1.04321 1.62708 1.02999 1.21886 0.97955 0.95595 0.91533 1.21450 0.98123 1.01572 0.92356 1.22709 0.95294 0.95245 0.91166 0.93428 1.22377 0.94445 1.01750 0.97371 1.22295 0.97050 1.01919 0.95022 1.23110 0.90298 1.00277 0.95948 1.65300 1.03530 1.49764 1.05008 1.22500 0.94660 0.96948 0.99329 0.90840 0.94872 0.95378 0.96220 0.91636 0.92125 0.85549 0.91750 0.97033 0.92629 0.90523 0.90341 0.91394 0.91012 0.91594 0.90350 0.94202 0.91004 0.91548 0.95657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.76 9.38 37.16 0.35 -2.41 16 2 C -0.15 -3.47 5.47 -26.73 -0.15 -3.62 16 3 C 0.20 5.08 1.95 -68.87 -0.13 4.94 16 4 H 0.02 0.66 7.10 -51.93 -0.37 0.29 16 5 C -0.57 -15.80 7.23 -34.44 -0.25 -16.05 16 6 H 0.05 1.56 7.83 -52.49 -0.41 1.15 16 7 C 0.02 0.49 5.22 -17.82 -0.09 0.39 16 8 N -0.92 -27.23 13.10 55.43 0.73 -26.51 16 9 Si 1.07 25.25 29.91 -169.99 -5.09 20.16 16 10 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 12 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 13 N -0.68 -14.57 6.20 -107.96 -0.67 -15.24 16 14 C 0.06 1.10 5.24 -3.83 -0.02 1.08 16 15 C -0.10 -1.47 5.14 -26.73 -0.14 -1.61 16 16 C 0.06 0.85 2.34 -66.07 -0.15 0.69 16 17 H 0.05 0.63 7.89 -51.93 -0.41 0.22 16 18 C -0.12 -1.49 5.69 -25.35 -0.14 -1.63 16 19 C -0.12 -1.27 7.00 -25.35 -0.18 -1.45 16 20 C 0.03 0.33 6.50 -2.13 -0.01 0.31 16 21 N -0.51 -6.29 5.34 -230.26 -1.23 -7.52 16 22 C 0.01 0.15 9.42 60.06 0.57 0.72 16 23 H 0.07 1.69 6.91 -51.93 -0.36 1.33 16 24 H 0.03 0.62 6.62 -51.93 -0.34 0.28 16 25 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.02 0.41 7.36 -51.93 -0.38 0.03 16 27 H 0.07 1.66 6.42 -51.93 -0.33 1.33 16 28 H 0.27 7.93 5.96 -40.82 -0.24 7.69 16 29 H 0.33 6.72 6.67 -39.29 -0.26 6.46 16 30 H 0.06 1.21 7.36 -51.93 -0.38 0.83 16 31 H 0.01 0.21 7.40 -51.93 -0.38 -0.18 16 32 H 0.05 0.84 7.51 -51.93 -0.39 0.45 16 33 H 0.08 1.27 8.09 -51.93 -0.42 0.85 16 34 H 0.08 1.04 7.81 -51.93 -0.41 0.64 16 35 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 37 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.04 0.39 7.98 -51.93 -0.41 -0.03 16 40 H 0.07 0.78 7.52 -51.93 -0.39 0.39 16 41 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 42 H 0.02 0.25 7.97 -51.93 -0.41 -0.16 16 LS Contribution 319.72 15.07 4.82 4.82 Total: -1.00 -29.25 319.72 -9.44 -38.69 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: -7.65 Total: 4.23 kcal Atomic # 6 Polarization: -18.28 SS G_CDS: -0.36 Total: -18.64 kcal Atomic # 7 Polarization: -48.09 SS G_CDS: -1.17 Total: -49.27 kcal Atomic # 14 Polarization: 25.25 SS G_CDS: -5.09 Total: 20.16 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -29.25 -9.44 -38.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565168310.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.555 kcal (2) G-P(sol) polarization free energy of solvation -29.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds