Wall clock time and date at job start Mon Mar 30 2020 17:52:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47232 * 2 1 4 4 C 1.50706 * 109.47051 * 240.00237 * 2 1 3 5 5 H 1.07999 * 119.99816 * 240.00290 * 4 2 1 6 6 C 1.37876 * 120.00344 * 60.00147 * 4 2 1 7 7 N 1.31514 * 119.99769 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00300 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.46819 * 59.99744 * 8 6 4 10 10 H 1.48494 * 109.47285 * 179.97438 * 8 6 4 11 11 H 1.48494 * 109.47196 * 300.00241 * 8 6 4 12 12 C 1.52999 * 109.47317 * 120.00367 * 2 1 3 13 13 N 1.46906 * 109.46897 * 299.99967 * 12 2 1 14 14 C 1.46898 * 110.99888 * 179.97438 * 13 12 2 15 15 H 1.08996 * 109.47149 * 35.00177 * 14 13 12 16 16 C 1.52995 * 109.47098 * 274.99671 * 14 13 12 17 17 C 1.52996 * 109.47141 * 180.02562 * 16 14 13 18 18 C 1.52997 * 109.47347 * 60.00218 * 17 16 14 19 19 C 1.53004 * 109.46854 * 299.99842 * 18 17 16 20 20 H 1.08990 * 109.47208 * 300.00165 * 19 18 17 21 21 N 1.46904 * 109.46858 * 179.97438 * 19 18 17 22 22 C 1.52998 * 109.46733 * 155.00124 * 14 13 12 23 23 H 1.09002 * 109.47153 * 299.99992 * 1 2 3 24 24 H 1.09001 * 109.46832 * 59.99801 * 1 2 3 25 25 H 1.08992 * 109.47303 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47140 * 179.97438 * 3 2 1 27 27 H 1.09001 * 109.47375 * 299.99867 * 3 2 1 28 28 H 1.09002 * 109.47497 * 60.00225 * 3 2 1 29 29 H 0.97000 * 120.00540 * 180.02562 * 7 6 4 30 30 H 1.09000 * 109.47486 * 179.97438 * 12 2 1 31 31 H 1.09001 * 109.47362 * 59.99268 * 12 2 1 32 32 H 1.00902 * 110.99923 * 303.95801 * 13 12 2 33 33 H 1.09002 * 109.47229 * 300.00584 * 16 14 13 34 34 H 1.09000 * 109.47371 * 60.00269 * 16 14 13 35 35 H 1.09007 * 109.47009 * 180.02562 * 17 16 14 36 36 H 1.09002 * 109.47270 * 300.00234 * 17 16 14 37 37 H 1.08996 * 109.47026 * 60.00239 * 18 17 16 38 38 H 1.09002 * 109.47093 * 180.02562 * 18 17 16 39 39 H 1.00902 * 110.99468 * 60.00636 * 21 19 18 40 40 H 1.00896 * 110.99755 * 183.95620 * 21 19 18 41 41 H 1.09007 * 109.47319 * 299.99691 * 22 14 13 42 42 H 1.08996 * 109.47984 * 59.99944 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6993 -0.2393 -2.4828 7 7 0.9428 0.8297 -2.6034 8 14 2.3225 -1.1194 -4.0081 9 1 1.8281 -2.5198 -4.0083 10 1 1.8270 -0.4198 -5.2205 11 1 3.8075 -1.1189 -4.0078 12 6 2.0400 -0.7213 1.2492 13 7 1.5503 -0.0288 2.4487 14 6 2.0209 -0.6954 3.6702 15 1 3.0227 -1.0917 3.5050 16 6 1.0710 -1.8413 4.0242 17 6 1.5607 -2.5351 5.2968 18 6 1.5940 -1.5266 6.4469 19 6 2.5440 -0.3806 6.0930 20 1 3.5458 -0.7770 5.9282 21 7 2.5754 0.5879 7.1971 22 6 2.0545 0.3129 4.8205 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 3.1300 1.4424 0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6767 1.9564 0.8900 29 1 0.7081 1.1610 -3.4844 30 1 3.1300 -0.7217 1.2490 31 1 1.6766 -1.7490 1.2492 32 1 1.8197 0.9435 2.4401 33 1 0.0691 -1.4449 4.1893 34 1 1.0469 -2.5596 3.2047 35 1 0.8841 -3.3518 5.5487 36 1 2.5626 -2.9314 5.1320 37 1 0.5921 -1.1304 6.6118 38 1 1.9433 -2.0208 7.3535 39 1 2.8957 0.1539 8.0498 40 1 3.1456 1.3863 6.9615 41 1 2.7313 1.1294 4.5684 42 1 1.0528 0.7093 4.9859 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000565905483.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:52:17 Heat of formation + Delta-G solvation = -26.335164 kcal Electronic energy + Delta-G solvation = -18156.168682 eV Core-core repulsion = 15555.638540 eV Total energy + Delta-G solvation = -2600.530142 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.99201 -36.52410 -34.14893 -32.70121 -31.03407 -28.68588 -27.66563 -25.52718 -25.17841 -23.79801 -22.28171 -20.86780 -19.61286 -18.32643 -16.11881 -15.63082 -15.38733 -15.03636 -14.73973 -14.55814 -14.17178 -13.73341 -13.24950 -12.69524 -12.39533 -12.16480 -12.05848 -11.57632 -11.55455 -11.28513 -11.06206 -10.97101 -10.69631 -10.65634 -10.48134 -10.29216 -10.11150 -10.05491 -10.00686 -9.34006 -8.99788 -8.83710 -8.58990 -8.26014 -7.64509 -5.88216 -3.98643 3.34171 3.38979 3.41556 4.25678 4.45739 4.61822 4.75552 5.06029 5.21415 5.28617 5.36964 5.48043 5.52166 5.54889 5.56220 5.73587 5.95095 6.12691 6.14969 6.25149 6.29372 6.38872 6.44991 6.46698 6.63851 6.76972 6.93598 7.01629 7.12203 7.20965 7.27468 7.43254 7.52318 7.78907 7.80068 7.88417 8.04907 8.25203 8.38673 8.59398 9.02662 9.66093 11.12201 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.044624 B = 0.004954 C = 0.004766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.320675 B = 5650.131484 C = 5873.973071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.068 3.932 3 C -0.132 4.132 4 C -0.507 4.507 5 H 0.050 0.950 6 C 0.065 3.935 7 N -0.885 5.885 8 Si 0.888 3.112 9 H -0.278 1.278 10 H -0.288 1.288 11 H -0.279 1.279 12 C 0.077 3.923 13 N -0.682 5.682 14 C 0.089 3.911 15 H 0.033 0.967 16 C -0.106 4.106 17 C -0.118 4.118 18 C -0.109 4.109 19 C 0.094 3.906 20 H 0.031 0.969 21 N -0.848 5.848 22 C -0.112 4.112 23 H 0.020 0.980 24 H 0.073 0.927 25 H 0.017 0.983 26 H 0.018 0.982 27 H 0.083 0.917 28 H 0.011 0.989 29 H 0.258 0.742 30 H 0.010 0.990 31 H 0.055 0.945 32 H 0.337 0.663 33 H 0.068 0.932 34 H 0.062 0.938 35 H 0.063 0.937 36 H 0.056 0.944 37 H 0.071 0.929 38 H 0.054 0.946 39 H 0.338 0.662 40 H 0.340 0.660 41 H 0.055 0.945 42 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.775 -2.217 15.723 16.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.068 3.932 3 C -0.190 4.190 4 C -0.545 4.545 5 H 0.069 0.931 6 C -0.135 4.135 7 N -0.524 5.524 8 Si 0.716 3.284 9 H -0.204 1.204 10 H -0.214 1.214 11 H -0.205 1.205 12 C -0.051 4.051 13 N -0.314 5.314 14 C -0.022 4.022 15 H 0.051 0.949 16 C -0.144 4.144 17 C -0.157 4.157 18 C -0.147 4.147 19 C -0.018 4.018 20 H 0.049 0.951 21 N -0.378 5.378 22 C -0.150 4.150 23 H 0.039 0.961 24 H 0.092 0.908 25 H 0.036 0.964 26 H 0.037 0.963 27 H 0.101 0.899 28 H 0.030 0.970 29 H 0.068 0.932 30 H 0.028 0.972 31 H 0.074 0.926 32 H 0.156 0.844 33 H 0.087 0.913 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.075 0.925 37 H 0.089 0.911 38 H 0.073 0.927 39 H 0.150 0.850 40 H 0.152 0.848 41 H 0.074 0.926 42 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 1.301 -2.357 15.441 15.674 hybrid contribution 2.438 -0.456 -0.880 2.632 sum 3.739 -2.812 14.562 15.295 Atomic orbital electron populations 1.21625 0.97377 0.98524 1.00046 1.18091 0.93222 0.91925 0.89991 1.21829 0.97611 0.99247 1.00271 1.21078 1.31097 1.11823 0.90546 0.93146 1.24880 0.95048 0.94976 0.98638 1.69825 1.36750 1.22814 1.22968 0.86730 0.79068 0.79859 0.82704 1.20416 1.21362 1.20519 1.22174 0.95181 0.97858 0.89922 1.60606 1.63728 1.06125 1.00953 1.21427 0.96088 0.94397 0.90250 0.94899 1.21517 0.99662 0.97034 0.96220 1.21531 1.01187 0.97706 0.95260 1.21536 1.00354 0.95268 0.97587 1.21303 0.97127 0.92319 0.91049 0.95108 1.58727 1.62038 1.11254 1.05747 1.21704 1.02548 0.97547 0.93222 0.96070 0.90828 0.96376 0.96330 0.89858 0.97038 0.93166 0.97151 0.92627 0.84364 0.91299 0.91882 0.91838 0.92485 0.91053 0.92725 0.85040 0.84753 0.92636 0.90315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.92 8.09 37.16 0.30 -2.62 16 2 C 0.07 1.67 0.57 -155.66 -0.09 1.58 16 3 C -0.13 -3.15 7.92 37.16 0.29 -2.86 16 4 C -0.51 -13.79 8.01 -34.44 -0.28 -14.07 16 5 H 0.05 1.37 7.74 -52.49 -0.41 0.96 16 6 C 0.07 1.79 5.15 -17.82 -0.09 1.70 16 7 N -0.88 -24.70 9.35 55.43 0.52 -24.18 16 8 Si 0.89 21.27 29.54 -169.99 -5.02 16.25 16 9 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 10 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 11 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 12 C 0.08 1.64 4.38 -3.82 -0.02 1.62 16 13 N -0.68 -12.34 5.52 -106.73 -0.59 -12.93 16 14 C 0.09 1.34 2.49 -67.72 -0.17 1.17 16 15 H 0.03 0.52 7.80 -51.93 -0.41 0.11 16 16 C -0.11 -1.50 5.42 -26.74 -0.15 -1.64 16 17 C -0.12 -1.34 5.92 -26.73 -0.16 -1.50 16 18 C -0.11 -1.17 5.50 -26.73 -0.15 -1.31 16 19 C 0.09 1.03 3.25 -67.73 -0.22 0.81 16 20 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 21 N -0.85 -8.11 9.25 -4.68 -0.04 -8.15 16 22 C -0.11 -1.45 4.73 -26.75 -0.13 -1.57 16 23 H 0.02 0.48 7.60 -51.93 -0.39 0.08 16 24 H 0.07 1.99 6.07 -51.93 -0.32 1.68 16 25 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.08 2.21 6.07 -51.93 -0.32 1.89 16 28 H 0.01 0.23 6.57 -51.93 -0.34 -0.11 16 29 H 0.26 6.96 8.31 -40.82 -0.34 6.63 16 30 H 0.01 0.22 8.06 -51.93 -0.42 -0.20 16 31 H 0.06 1.21 7.43 -51.93 -0.39 0.82 16 32 H 0.34 6.07 6.39 -39.29 -0.25 5.82 16 33 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 34 H 0.06 0.97 7.45 -51.93 -0.39 0.58 16 35 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.34 2.63 9.04 -39.29 -0.36 2.28 16 40 H 0.34 2.91 8.99 -39.29 -0.35 2.56 16 41 H 0.05 0.70 8.12 -51.93 -0.42 0.28 16 42 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 LS Contribution 315.35 15.07 4.75 4.75 Total: -1.00 -27.46 315.35 -8.92 -36.37 By element: Atomic # 1 Polarization: 14.26 SS G_CDS: -7.69 Total: 6.57 kcal Atomic # 6 Polarization: -17.85 SS G_CDS: -0.84 Total: -18.69 kcal Atomic # 7 Polarization: -45.15 SS G_CDS: -0.11 Total: -45.26 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -27.46 -8.92 -36.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565905483.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.040 kcal (2) G-P(sol) polarization free energy of solvation -27.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds