Wall clock time and date at job start Mon Mar 30 2020 17:52:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47232 * 2 1 4 4 C 1.50706 * 109.47051 * 240.00237 * 2 1 3 5 5 H 1.07999 * 119.99816 * 240.00290 * 4 2 1 6 6 C 1.37876 * 120.00344 * 60.00147 * 4 2 1 7 7 N 1.31514 * 119.99769 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00300 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.46819 * 59.99744 * 8 6 4 10 10 H 1.48494 * 109.47285 * 179.97438 * 8 6 4 11 11 H 1.48494 * 109.47196 * 300.00241 * 8 6 4 12 12 C 1.52999 * 109.47317 * 120.00367 * 2 1 3 13 13 N 1.46906 * 109.46897 * 299.99967 * 12 2 1 14 14 C 1.46898 * 110.99888 * 179.97438 * 13 12 2 15 15 H 1.08996 * 109.47149 * 35.00177 * 14 13 12 16 16 C 1.52995 * 109.47098 * 274.99671 * 14 13 12 17 17 C 1.52996 * 109.47141 * 180.02562 * 16 14 13 18 18 C 1.52997 * 109.47347 * 60.00218 * 17 16 14 19 19 C 1.53004 * 109.46854 * 299.99842 * 18 17 16 20 20 H 1.08990 * 109.47208 * 300.00165 * 19 18 17 21 21 N 1.46904 * 109.46858 * 179.97438 * 19 18 17 22 22 C 1.52998 * 109.46733 * 155.00124 * 14 13 12 23 23 H 1.09002 * 109.47153 * 299.99992 * 1 2 3 24 24 H 1.09001 * 109.46832 * 59.99801 * 1 2 3 25 25 H 1.08992 * 109.47303 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47140 * 179.97438 * 3 2 1 27 27 H 1.09001 * 109.47375 * 299.99867 * 3 2 1 28 28 H 1.09002 * 109.47497 * 60.00225 * 3 2 1 29 29 H 0.97000 * 120.00540 * 180.02562 * 7 6 4 30 30 H 1.09000 * 109.47486 * 179.97438 * 12 2 1 31 31 H 1.09001 * 109.47362 * 59.99268 * 12 2 1 32 32 H 1.00902 * 110.99923 * 303.95801 * 13 12 2 33 33 H 1.09002 * 109.47229 * 300.00584 * 16 14 13 34 34 H 1.09000 * 109.47371 * 60.00269 * 16 14 13 35 35 H 1.09007 * 109.47009 * 180.02562 * 17 16 14 36 36 H 1.09002 * 109.47270 * 300.00234 * 17 16 14 37 37 H 1.08996 * 109.47026 * 60.00239 * 18 17 16 38 38 H 1.09002 * 109.47093 * 180.02562 * 18 17 16 39 39 H 1.00902 * 110.99468 * 60.00636 * 21 19 18 40 40 H 1.00896 * 110.99755 * 183.95620 * 21 19 18 41 41 H 1.09007 * 109.47319 * 299.99691 * 22 14 13 42 42 H 1.08996 * 109.47984 * 59.99944 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6993 -0.2393 -2.4828 7 7 0.9428 0.8297 -2.6034 8 14 2.3225 -1.1194 -4.0081 9 1 1.8281 -2.5198 -4.0083 10 1 1.8270 -0.4198 -5.2205 11 1 3.8075 -1.1189 -4.0078 12 6 2.0400 -0.7213 1.2492 13 7 1.5503 -0.0288 2.4487 14 6 2.0209 -0.6954 3.6702 15 1 3.0227 -1.0917 3.5050 16 6 1.0710 -1.8413 4.0242 17 6 1.5607 -2.5351 5.2968 18 6 1.5940 -1.5266 6.4469 19 6 2.5440 -0.3806 6.0930 20 1 3.5458 -0.7770 5.9282 21 7 2.5754 0.5879 7.1971 22 6 2.0545 0.3129 4.8205 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 3.1300 1.4424 0.0005 27 1 1.6767 1.9563 -0.8900 28 1 1.6767 1.9564 0.8900 29 1 0.7081 1.1610 -3.4844 30 1 3.1300 -0.7217 1.2490 31 1 1.6766 -1.7490 1.2492 32 1 1.8197 0.9435 2.4401 33 1 0.0691 -1.4449 4.1893 34 1 1.0469 -2.5596 3.2047 35 1 0.8841 -3.3518 5.5487 36 1 2.5626 -2.9314 5.1320 37 1 0.5921 -1.1304 6.6118 38 1 1.9433 -2.0208 7.3535 39 1 2.8957 0.1539 8.0498 40 1 3.1456 1.3863 6.9615 41 1 2.7313 1.1294 4.5684 42 1 1.0528 0.7093 4.9859 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000565905483.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:52:17 Heat of formation + Delta-G solvation = -43.929667 kcal Electronic energy + Delta-G solvation = -18156.931637 eV Core-core repulsion = 15555.638540 eV Total energy + Delta-G solvation = -2601.293097 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.11550 -38.19055 -35.54536 -33.92162 -32.76355 -29.95236 -28.69972 -27.49977 -27.24465 -25.48334 -23.28007 -22.00922 -20.68822 -20.18040 -17.94152 -17.06702 -16.41678 -16.36625 -16.04257 -15.81519 -15.49966 -15.02630 -14.81923 -14.40238 -13.90122 -13.70165 -13.26695 -13.09997 -12.97884 -12.68999 -12.64931 -12.51923 -12.48475 -12.20038 -12.10362 -12.00720 -11.54649 -11.42350 -11.24899 -11.17543 -10.81362 -10.59056 -10.33860 -9.59319 -9.15361 -7.96160 -6.13350 1.43360 1.44053 1.51055 2.46565 3.25435 3.25935 3.54035 3.79843 4.06344 4.16973 4.29171 4.44936 4.47556 4.50916 4.58184 4.61893 4.66178 4.67502 4.87478 5.00201 5.05490 5.15182 5.18822 5.20470 5.26143 5.29210 5.31270 5.36965 5.44221 5.52071 5.56447 5.69852 5.77297 6.18958 6.25616 6.30290 6.35957 6.50518 6.62662 6.68414 6.95922 7.54080 9.01810 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.044624 B = 0.004954 C = 0.004766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.320675 B = 5650.131484 C = 5873.973071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.058 3.942 3 C -0.120 4.120 4 C -0.528 4.528 5 H 0.043 0.957 6 C 0.023 3.977 7 N -0.903 5.903 8 Si 0.945 3.055 9 H -0.276 1.276 10 H -0.285 1.285 11 H -0.275 1.275 12 C 0.094 3.906 13 N -0.684 5.684 14 C 0.089 3.911 15 H 0.029 0.971 16 C -0.104 4.104 17 C -0.112 4.112 18 C -0.106 4.106 19 C 0.098 3.902 20 H 0.034 0.966 21 N -0.851 5.851 22 C -0.104 4.104 23 H 0.033 0.967 24 H 0.048 0.952 25 H 0.008 0.992 26 H 0.016 0.984 27 H 0.056 0.944 28 H 0.033 0.967 29 H 0.257 0.743 30 H 0.005 0.995 31 H 0.046 0.954 32 H 0.338 0.662 33 H 0.060 0.940 34 H 0.044 0.956 35 H 0.076 0.924 36 H 0.061 0.939 37 H 0.063 0.937 38 H 0.074 0.926 39 H 0.350 0.650 40 H 0.346 0.654 41 H 0.058 0.942 42 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.406 -2.618 17.207 17.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.058 3.942 3 C -0.178 4.178 4 C -0.567 4.567 5 H 0.061 0.939 6 C -0.176 4.176 7 N -0.542 5.542 8 Si 0.771 3.229 9 H -0.202 1.202 10 H -0.210 1.210 11 H -0.201 1.201 12 C -0.035 4.035 13 N -0.316 5.316 14 C -0.021 4.021 15 H 0.047 0.953 16 C -0.142 4.142 17 C -0.150 4.150 18 C -0.144 4.144 19 C -0.014 4.014 20 H 0.052 0.948 21 N -0.383 5.383 22 C -0.142 4.142 23 H 0.052 0.948 24 H 0.067 0.933 25 H 0.028 0.972 26 H 0.035 0.965 27 H 0.075 0.925 28 H 0.052 0.948 29 H 0.067 0.933 30 H 0.023 0.977 31 H 0.064 0.936 32 H 0.157 0.843 33 H 0.079 0.921 34 H 0.063 0.937 35 H 0.094 0.906 36 H 0.080 0.920 37 H 0.082 0.918 38 H 0.093 0.907 39 H 0.164 0.836 40 H 0.159 0.841 41 H 0.076 0.924 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 1.938 -2.758 16.948 17.280 hybrid contribution 2.223 -0.317 -1.311 2.600 sum 4.161 -3.076 15.637 16.470 Atomic orbital electron populations 1.21449 0.97707 0.97648 0.99330 1.18155 0.92926 0.92400 0.90732 1.21657 0.97328 0.98819 1.00005 1.21399 1.31302 1.11956 0.92013 0.93863 1.25534 0.95293 0.95657 1.01145 1.69958 1.37272 1.23623 1.23347 0.85832 0.78623 0.78823 0.79605 1.20165 1.21011 1.20091 1.21811 0.94541 0.97149 0.90013 1.60554 1.63838 1.06141 1.01076 1.21507 0.95919 0.95100 0.89594 0.95292 1.21489 0.99145 0.96428 0.97186 1.21485 1.01578 0.98003 0.93973 1.21504 0.99911 0.94975 0.97962 1.21197 0.97180 0.92471 0.90522 0.94835 1.58671 1.62541 1.11259 1.05800 1.21603 1.02127 0.97085 0.93418 0.94770 0.93323 0.97234 0.96509 0.92542 0.94772 0.93304 0.97733 0.93554 0.84263 0.92143 0.93673 0.90572 0.92037 0.91838 0.90744 0.83642 0.84057 0.92372 0.91366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -5.15 8.09 71.98 0.58 -4.57 16 2 C 0.06 2.87 0.57 -52.93 -0.03 2.84 16 3 C -0.12 -5.73 7.92 71.98 0.57 -5.16 16 4 C -0.53 -28.94 8.01 25.60 0.21 -28.74 16 5 H 0.04 2.37 7.74 -2.91 -0.02 2.35 16 6 C 0.02 1.25 5.15 84.65 0.44 1.68 16 7 N -0.90 -50.90 9.35 21.45 0.20 -50.70 16 8 Si 0.94 43.69 29.54 68.60 2.03 45.72 16 9 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 10 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 11 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 12 C 0.09 3.97 4.38 86.30 0.38 4.35 16 13 N -0.68 -24.26 5.52 -491.58 -2.71 -26.97 16 14 C 0.09 2.58 2.49 44.91 0.11 2.69 16 15 H 0.03 0.88 7.80 -2.39 -0.02 0.86 16 16 C -0.10 -2.84 5.42 30.59 0.17 -2.68 16 17 C -0.11 -2.30 5.92 30.59 0.18 -2.12 16 18 C -0.11 -1.98 5.50 30.59 0.17 -1.81 16 19 C 0.10 1.92 3.25 44.90 0.15 2.06 16 20 H 0.03 0.66 8.14 -2.39 -0.02 0.64 16 21 N -0.85 -14.07 9.25 -168.73 -1.56 -15.63 16 22 C -0.10 -2.51 4.73 30.58 0.14 -2.37 16 23 H 0.03 1.56 7.60 -2.39 -0.02 1.54 16 24 H 0.05 2.66 6.07 -2.39 -0.01 2.64 16 25 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 26 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 27 H 0.06 3.00 6.07 -2.39 -0.01 2.99 16 28 H 0.03 1.42 6.57 -2.39 -0.02 1.41 16 29 H 0.26 13.99 8.31 -92.71 -0.77 13.22 16 30 H 0.00 0.19 8.06 -2.39 -0.02 0.18 16 31 H 0.05 2.03 7.43 -2.39 -0.02 2.01 16 32 H 0.34 11.79 6.39 -89.69 -0.57 11.21 16 33 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 34 H 0.04 1.38 7.45 -2.39 -0.02 1.36 16 35 H 0.08 1.39 8.14 -2.38 -0.02 1.37 16 36 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.35 4.42 9.04 -89.69 -0.81 3.61 16 40 H 0.35 5.08 8.99 -89.70 -0.81 4.28 16 41 H 0.06 1.37 8.12 -2.38 -0.02 1.35 16 42 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 Total: -1.00 -57.80 315.35 -0.18 -57.98 By element: Atomic # 1 Polarization: 24.62 SS G_CDS: -1.19 Total: 23.42 kcal Atomic # 6 Polarization: -36.87 SS G_CDS: 3.06 Total: -33.82 kcal Atomic # 7 Polarization: -89.23 SS G_CDS: -4.07 Total: -93.30 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.72 kcal Total: -57.80 -0.18 -57.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565905483.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.046 kcal (2) G-P(sol) polarization free energy of solvation -57.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds