Wall clock time and date at job start Mon Mar 30 2020 17:52:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09000 * 109.47191 * 2 1 4 4 C 1.53001 * 109.46680 * 120.00021 * 2 1 3 5 5 N 1.46904 * 109.46571 * 174.76825 * 4 2 1 6 6 C 1.46853 * 110.99709 * 190.10405 * 5 4 2 7 7 C 1.53039 * 109.52268 * 174.15985 * 6 5 4 8 8 C 1.53117 * 109.27619 * 59.17940 * 7 6 5 9 9 C 1.53120 * 109.16081 * 302.34280 * 8 7 6 10 10 H 1.08999 * 109.53630 * 297.69300 * 9 8 7 11 11 C 1.53001 * 109.50210 * 177.59630 * 9 8 7 12 12 C 1.46846 * 111.00103 * 65.89507 * 5 4 2 13 13 N 1.46902 * 109.46776 * 239.99726 * 2 1 3 14 14 C 1.46901 * 110.99853 * 85.00685 * 13 2 1 15 15 C 1.50698 * 109.47021 * 179.97438 * 14 13 2 16 16 H 1.08001 * 119.99952 * 359.97438 * 15 14 13 17 17 C 1.37880 * 119.99944 * 180.02562 * 15 14 13 18 18 N 1.31516 * 119.99829 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00087 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.47137 * 89.99418 * 19 17 15 21 21 H 1.48503 * 109.46999 * 210.00048 * 19 17 15 22 22 H 1.48499 * 109.46996 * 329.99423 * 19 17 15 23 23 H 1.09000 * 109.47191 * 179.97438 * 1 2 3 24 24 H 1.08993 * 109.47290 * 300.00186 * 1 2 3 25 25 H 1.09002 * 109.46574 * 60.00358 * 1 2 3 26 26 H 1.09002 * 109.47182 * 54.76792 * 4 2 1 27 27 H 1.08993 * 109.47345 * 294.76241 * 4 2 1 28 28 H 1.08994 * 109.46300 * 294.17678 * 6 5 4 29 29 H 1.08997 * 109.46224 * 54.15653 * 6 5 4 30 30 H 1.08999 * 109.49798 * 179.11896 * 7 6 5 31 31 H 1.08993 * 109.50219 * 299.19967 * 7 6 5 32 32 H 1.09005 * 109.52399 * 182.43753 * 8 7 6 33 33 H 1.08999 * 109.52684 * 62.25146 * 8 7 6 34 34 H 1.09001 * 109.47288 * 300.19941 * 11 9 8 35 35 H 1.08996 * 109.47242 * 180.19763 * 11 9 8 36 36 H 1.08995 * 109.47045 * 60.19705 * 11 9 8 37 37 H 1.08999 * 109.45954 * 65.82059 * 12 5 4 38 38 H 1.08994 * 109.46211 * 305.85157 * 12 5 4 39 39 H 1.00893 * 111.00352 * 321.04916 * 13 2 1 40 40 H 1.09006 * 109.46939 * 299.99554 * 14 13 2 41 41 H 1.08997 * 109.47399 * 59.99130 * 14 13 2 42 42 H 0.96999 * 119.99778 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 3.5036 -0.8316 1.1878 6 6 4.0089 -1.7213 2.2412 7 6 5.5142 -1.9275 2.0578 8 6 6.2222 -0.5715 2.1259 9 6 5.6438 0.3520 1.0501 10 1 5.8346 -0.0723 0.0644 11 6 6.3037 1.7287 1.1501 12 6 4.1347 0.4922 1.2627 13 7 2.0197 -0.6926 -1.1994 14 6 2.0826 0.2225 -2.3469 15 6 2.5885 -0.5216 -3.5557 16 1 2.8388 -1.5694 -3.4791 17 6 2.7330 0.1355 -4.7592 18 7 2.4287 1.4116 -4.8523 19 14 3.3608 -0.7867 -6.2574 20 1 2.2126 -1.3696 -6.9970 21 1 4.0959 0.1510 -7.1438 22 1 4.2732 -1.8746 -5.8226 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8899 25 1 -0.3632 0.5138 -0.8901 26 1 1.6021 -1.7183 1.2973 27 1 1.7552 -0.1562 2.1367 28 1 3.8199 -1.2731 3.2166 29 1 3.5005 -2.6834 2.1789 30 1 5.8917 -2.5753 2.8490 31 1 5.7029 -2.3889 1.0886 32 1 7.2896 -0.7088 1.9526 33 1 6.0660 -0.1279 3.1092 34 1 6.1138 2.1519 2.1365 35 1 5.8891 2.3867 0.3865 36 1 7.3784 1.6283 0.9987 37 1 3.9451 0.9299 2.2428 38 1 3.7175 1.1377 0.4899 39 1 1.4496 -1.4979 -1.4100 40 1 1.0871 0.6163 -2.5525 41 1 2.7589 1.0461 -2.1182 42 1 2.5300 1.8738 -5.6990 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000567681451.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:52:23 Heat of formation + Delta-G solvation = -17.167673 kcal Electronic energy + Delta-G solvation = -18216.936198 eV Core-core repulsion = 15616.803588 eV Total energy + Delta-G solvation = -2600.132610 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.02347 -36.35987 -33.72619 -32.55997 -31.54358 -29.69015 -26.45792 -26.07251 -25.69971 -23.00232 -21.64339 -21.25879 -19.82124 -19.34681 -16.31185 -15.65231 -15.13935 -14.72169 -14.33600 -14.19411 -13.87586 -13.71028 -13.58861 -12.84712 -12.74390 -12.33875 -12.06835 -11.99792 -11.76467 -11.64521 -11.35493 -11.18036 -11.06681 -10.80804 -10.65017 -10.55773 -10.41098 -10.33942 -10.06575 -9.85324 -9.68748 -9.06686 -8.39618 -7.74031 -6.98869 -5.94718 -3.94994 3.36781 3.42664 3.48152 4.22717 4.50616 4.95132 5.01297 5.07856 5.22567 5.35978 5.41291 5.48246 5.58813 5.65152 5.68992 5.74718 5.76312 5.82551 5.86031 5.91783 5.98920 6.01511 6.07134 6.10157 6.23009 6.32480 6.36458 6.39532 6.48137 6.57194 6.61261 6.73107 7.37794 7.55089 7.58482 7.59842 7.91299 8.26241 8.58853 8.79879 9.15736 9.69401 11.16465 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.020062 B = 0.006623 C = 0.005774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1395.347827 B = 4226.732375 C = 4848.149004 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.084 3.916 3 H 0.068 0.932 4 C 0.073 3.927 5 N -0.509 5.509 6 C 0.058 3.942 7 C -0.116 4.116 8 C -0.113 4.113 9 C -0.090 4.090 10 H 0.085 0.915 11 C -0.145 4.145 12 C 0.068 3.932 13 N -0.662 5.662 14 C 0.198 3.802 15 C -0.506 4.506 16 H 0.061 0.939 17 C 0.054 3.946 18 N -0.901 5.901 19 Si 0.896 3.104 20 H -0.282 1.282 21 H -0.288 1.288 22 H -0.273 1.273 23 H 0.052 0.948 24 H 0.047 0.953 25 H 0.059 0.941 26 H 0.067 0.933 27 H 0.021 0.979 28 H 0.020 0.980 29 H 0.068 0.932 30 H 0.058 0.942 31 H 0.074 0.926 32 H 0.058 0.942 33 H 0.052 0.948 34 H 0.047 0.953 35 H 0.058 0.942 36 H 0.053 0.947 37 H 0.017 0.983 38 H 0.080 0.920 39 H 0.324 0.676 40 H -0.019 1.019 41 H 0.024 0.976 42 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.083 -2.746 15.111 15.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.027 4.027 3 H 0.086 0.914 4 C -0.056 4.056 5 N -0.232 5.232 6 C -0.071 4.071 7 C -0.154 4.154 8 C -0.150 4.150 9 C -0.109 4.109 10 H 0.104 0.896 11 C -0.203 4.203 12 C -0.060 4.060 13 N -0.291 5.291 14 C 0.071 3.929 15 C -0.544 4.544 16 H 0.080 0.920 17 C -0.147 4.147 18 N -0.541 5.541 19 Si 0.724 3.276 20 H -0.209 1.209 21 H -0.214 1.214 22 H -0.198 1.198 23 H 0.071 0.929 24 H 0.066 0.934 25 H 0.078 0.922 26 H 0.085 0.915 27 H 0.039 0.961 28 H 0.038 0.962 29 H 0.087 0.913 30 H 0.077 0.923 31 H 0.092 0.908 32 H 0.077 0.923 33 H 0.071 0.929 34 H 0.066 0.934 35 H 0.077 0.923 36 H 0.072 0.928 37 H 0.035 0.965 38 H 0.098 0.902 39 H 0.141 0.859 40 H -0.001 1.001 41 H 0.042 0.958 42 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 3.886 -2.722 14.689 15.436 hybrid contribution -0.919 0.145 -0.324 0.985 sum 2.967 -2.576 14.365 14.893 Atomic orbital electron populations 1.22498 0.98365 1.01471 1.01563 1.21521 0.91103 0.97830 0.92272 0.91406 1.22098 0.87600 0.99993 0.95863 1.61665 1.04717 1.11141 1.45666 1.22050 0.95785 0.97186 0.92040 1.21558 0.94533 0.97009 1.02260 1.21619 0.99260 0.95685 0.98454 1.21151 0.94295 0.95186 1.00258 0.89621 1.21782 1.00253 0.96933 1.01300 1.22072 0.94252 0.90628 0.98999 1.60607 1.54984 1.09650 1.03833 1.19524 0.94690 0.91842 0.86872 1.21213 1.42763 0.96900 0.93560 0.92040 1.24975 0.95865 0.94888 0.98933 1.69967 1.49433 1.08992 1.25690 0.86533 0.78882 0.79594 0.82603 1.20874 1.21373 1.19789 0.92920 0.93425 0.92203 0.91461 0.96134 0.96233 0.91303 0.92332 0.90756 0.92293 0.92943 0.93400 0.92311 0.92826 0.96485 0.90212 0.85898 1.00133 0.95805 0.93114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.82 9.16 37.16 0.34 -2.48 16 2 C 0.08 1.50 2.37 -67.71 -0.16 1.34 16 3 H 0.07 1.30 6.34 -51.93 -0.33 0.97 16 4 C 0.07 1.12 4.66 -3.82 -0.02 1.10 16 5 N -0.51 -8.09 4.38 -234.67 -1.03 -9.12 16 6 C 0.06 0.77 5.46 -3.83 -0.02 0.75 16 7 C -0.12 -1.43 6.09 -26.65 -0.16 -1.59 16 8 C -0.11 -1.37 5.29 -26.61 -0.14 -1.51 16 9 C -0.09 -1.29 2.88 -90.54 -0.26 -1.55 16 10 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 11 C -0.14 -1.82 9.20 37.16 0.34 -1.48 16 12 C 0.07 1.06 4.57 -3.83 -0.02 1.04 16 13 N -0.66 -14.26 5.96 -107.98 -0.64 -14.90 16 14 C 0.20 5.21 5.24 -4.98 -0.03 5.19 16 15 C -0.51 -14.56 9.32 -34.44 -0.32 -14.88 16 16 H 0.06 1.76 7.81 -52.49 -0.41 1.35 16 17 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 18 N -0.90 -27.31 13.29 55.43 0.74 -26.57 16 19 Si 0.90 22.13 29.54 -169.99 -5.02 17.11 16 20 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 21 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 22 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 23 H 0.05 0.77 8.13 -51.93 -0.42 0.35 16 24 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.06 1.05 7.45 -51.93 -0.39 0.66 16 26 H 0.07 0.99 7.99 -51.93 -0.41 0.57 16 27 H 0.02 0.29 8.12 -51.93 -0.42 -0.13 16 28 H 0.02 0.25 8.14 -51.93 -0.42 -0.17 16 29 H 0.07 0.88 8.01 -51.93 -0.42 0.46 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.02 0.25 8.14 -51.93 -0.42 -0.17 16 38 H 0.08 1.42 6.32 -51.93 -0.33 1.09 16 39 H 0.32 6.85 8.46 -39.30 -0.33 6.52 16 40 H -0.02 -0.53 7.44 -51.93 -0.39 -0.92 16 41 H 0.02 0.69 8.05 -51.93 -0.42 0.27 16 42 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 326.18 15.07 4.92 4.92 Total: -1.00 -29.83 326.18 -9.63 -39.46 By element: Atomic # 1 Polarization: 9.76 SS G_CDS: -8.05 Total: 1.71 kcal Atomic # 6 Polarization: -12.06 SS G_CDS: -0.54 Total: -12.60 kcal Atomic # 7 Polarization: -49.66 SS G_CDS: -0.93 Total: -50.59 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -29.83 -9.63 -39.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567681451.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.293 kcal (2) G-P(sol) polarization free energy of solvation -29.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds