Wall clock time and date at job start Mon Mar 30 2020 17:52:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.46999 * 2 1 4 4 C 1.52995 * 109.46969 * 119.99817 * 2 1 3 5 5 N 1.46906 * 109.46978 * 175.00329 * 4 2 1 6 6 C 1.46901 * 110.99793 * 180.02562 * 5 4 2 7 7 C 1.50701 * 109.46921 * 179.97438 * 6 5 4 8 8 H 1.07998 * 120.00129 * 0.02562 * 7 6 5 9 9 C 1.37880 * 119.99861 * 179.97438 * 7 6 5 10 10 N 1.31510 * 119.99913 * 0.02562 * 9 7 6 11 11 Si 1.86797 * 119.99734 * 180.02562 * 9 7 6 12 12 H 1.48502 * 109.47432 * 0.02562 * 11 9 7 13 13 H 1.48506 * 109.46890 * 120.00210 * 11 9 7 14 14 H 1.48501 * 109.47062 * 240.00257 * 11 9 7 15 15 N 1.46897 * 109.47489 * 240.00358 * 2 1 3 16 16 C 1.46853 * 110.99600 * 306.04690 * 15 2 1 17 17 C 1.53044 * 109.52111 * 185.83977 * 16 15 2 18 18 C 1.53118 * 109.27867 * 300.81835 * 17 16 15 19 19 C 1.53117 * 109.16139 * 57.65465 * 18 17 16 20 20 H 1.09004 * 109.50709 * 62.32487 * 19 18 17 21 21 C 1.52993 * 109.50659 * 182.40560 * 19 18 17 22 22 C 1.46847 * 111.00085 * 70.25100 * 15 2 1 23 23 H 1.08997 * 109.47652 * 300.00213 * 1 2 3 24 24 H 1.09006 * 109.47108 * 60.00319 * 1 2 3 25 25 H 1.09005 * 109.46756 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.46859 * 55.00621 * 4 2 1 27 27 H 1.09002 * 109.47639 * 295.00289 * 4 2 1 28 28 H 1.00899 * 110.99995 * 56.04730 * 5 4 2 29 29 H 1.09002 * 109.47401 * 59.99808 * 6 5 4 30 30 H 1.09001 * 109.46874 * 299.99821 * 6 5 4 31 31 H 0.97002 * 119.99768 * 179.97438 * 10 9 7 32 32 H 1.08998 * 109.45881 * 305.85135 * 16 15 2 33 33 H 1.09001 * 109.46634 * 65.82433 * 16 15 2 34 34 H 1.09001 * 109.49915 * 60.76013 * 17 16 15 35 35 H 1.08998 * 109.50239 * 180.87655 * 17 16 15 36 36 H 1.09000 * 109.52102 * 177.55857 * 18 17 16 37 37 H 1.09000 * 109.52294 * 297.68964 * 18 17 16 38 38 H 1.09002 * 109.47150 * 60.00066 * 21 19 18 39 39 H 1.08997 * 109.47665 * 180.02562 * 21 19 18 40 40 H 1.09004 * 109.47471 * 300.00051 * 21 19 18 41 41 H 1.09002 * 109.46613 * 294.17669 * 22 15 2 42 42 H 1.08999 * 109.46034 * 54.15346 * 22 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 3.5040 -0.8265 1.1904 6 6 4.0303 -1.5158 2.3762 7 6 5.5315 -1.6053 2.2803 8 1 6.0436 -1.1912 1.4243 9 6 6.2515 -2.2149 3.2858 10 7 5.6280 -2.7186 4.3284 11 14 8.1124 -2.3251 3.1672 12 1 8.5668 -1.6868 1.9057 13 1 8.7246 -1.6242 4.3245 14 1 8.5254 -3.7515 3.1773 15 7 2.0198 -0.6924 -1.1994 16 6 1.4346 -2.0349 -1.3078 17 6 2.0745 -2.7785 -2.4825 18 6 1.8319 -1.9900 -3.7724 19 6 2.4081 -0.5800 -3.6155 20 1 3.4856 -0.6421 -3.4628 21 6 2.1172 0.2341 -4.8777 22 6 1.7585 0.0998 -2.4080 23 1 -0.3634 0.5138 0.8899 24 1 -0.3634 0.5138 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 1.6054 -1.7197 1.2951 27 1 1.7516 -0.1583 2.1370 28 1 3.9280 0.0827 1.0824 29 1 3.6094 -2.5199 2.4296 30 1 3.7556 -0.9587 3.2720 31 1 6.1345 -3.1478 5.0357 32 1 1.6178 -2.5864 -0.3857 33 1 0.3605 -1.9507 -1.4731 34 1 3.1467 -2.8752 -2.3112 35 1 1.6290 -3.7691 -2.5722 36 1 2.3231 -2.4936 -4.6050 37 1 0.7609 -1.9274 -3.9651 38 1 1.0396 0.2971 -5.0291 39 1 2.5279 1.2375 -4.7657 40 1 2.5771 -0.2523 -5.7380 41 1 0.6829 0.1740 -2.5682 42 1 2.1770 1.0987 -2.2849 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000571040154.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:52:28 Heat of formation + Delta-G solvation = -35.215257 kcal Electronic energy + Delta-G solvation = -18076.151881 eV Core-core repulsion = 15475.236669 eV Total energy + Delta-G solvation = -2600.915212 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.50847 -37.49630 -35.70011 -34.13278 -32.88075 -31.03038 -28.95568 -27.38567 -26.16321 -24.72236 -23.27897 -23.15253 -20.95032 -20.11631 -18.50326 -17.33339 -16.64307 -16.21137 -15.81108 -15.44272 -15.28377 -15.16617 -14.81117 -14.57636 -14.09572 -13.83503 -13.39973 -13.37602 -13.21426 -12.98590 -12.76072 -12.65799 -12.61794 -12.47330 -12.27116 -11.99698 -11.86211 -11.56609 -11.42435 -11.23018 -11.03669 -10.99585 -10.64832 -8.94307 -8.87366 -8.20512 -6.30967 1.41145 1.42100 1.56443 2.41654 3.03051 3.12601 3.64583 3.87050 3.94686 4.05042 4.10053 4.24082 4.35212 4.46585 4.49805 4.58946 4.65776 4.68927 4.75681 4.80933 4.87304 4.89217 4.91091 4.98970 5.06565 5.12297 5.15047 5.19057 5.27684 5.30996 5.34469 5.38156 5.47656 5.62654 5.65376 6.06418 6.36086 6.44874 6.55878 6.81992 6.97566 7.40176 8.91446 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.026136 B = 0.005432 C = 0.004938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.045828 B = 5153.514551 C = 5669.250316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.092 3.908 3 H 0.080 0.920 4 C 0.070 3.930 5 N -0.666 5.666 6 C 0.210 3.790 7 C -0.528 4.528 8 H 0.062 0.938 9 C 0.000 4.000 10 N -0.937 5.937 11 Si 0.973 3.027 12 H -0.264 1.264 13 H -0.276 1.276 14 H -0.278 1.278 15 N -0.527 5.527 16 C 0.063 3.937 17 C -0.116 4.116 18 C -0.106 4.106 19 C -0.090 4.090 20 H 0.058 0.942 21 C -0.138 4.138 22 C 0.063 3.937 23 H 0.066 0.934 24 H 0.069 0.931 25 H 0.056 0.944 26 H 0.050 0.950 27 H 0.017 0.983 28 H 0.331 0.669 29 H -0.006 1.006 30 H -0.045 1.045 31 H 0.264 0.736 32 H 0.050 0.950 33 H 0.039 0.961 34 H 0.048 0.952 35 H 0.071 0.929 36 H 0.068 0.932 37 H 0.066 0.934 38 H 0.060 0.940 39 H 0.057 0.943 40 H 0.061 0.939 41 H 0.038 0.962 42 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.962 5.507 -16.307 20.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.017 4.017 3 H 0.098 0.902 4 C -0.060 4.060 5 N -0.295 5.295 6 C 0.082 3.918 7 C -0.566 4.566 8 H 0.080 0.920 9 C -0.198 4.198 10 N -0.577 5.577 11 Si 0.797 3.203 12 H -0.188 1.188 13 H -0.202 1.202 14 H -0.204 1.204 15 N -0.251 5.251 16 C -0.065 4.065 17 C -0.154 4.154 18 C -0.144 4.144 19 C -0.109 4.109 20 H 0.077 0.923 21 C -0.196 4.196 22 C -0.064 4.064 23 H 0.085 0.915 24 H 0.088 0.912 25 H 0.075 0.925 26 H 0.069 0.931 27 H 0.035 0.965 28 H 0.148 0.852 29 H 0.012 0.988 30 H -0.028 1.028 31 H 0.073 0.927 32 H 0.069 0.931 33 H 0.057 0.943 34 H 0.067 0.933 35 H 0.090 0.910 36 H 0.087 0.913 37 H 0.085 0.915 38 H 0.079 0.921 39 H 0.076 0.924 40 H 0.080 0.920 41 H 0.056 0.944 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -10.434 4.790 -16.492 20.094 hybrid contribution -0.058 0.364 1.322 1.373 sum -10.492 5.154 -15.170 19.151 Atomic orbital electron populations 1.22346 0.95864 1.02343 1.02889 1.21620 0.93243 0.97352 0.89489 0.90162 1.21980 0.89460 0.98974 0.95572 1.60372 1.03839 1.24386 1.40945 1.19188 0.94497 0.92213 0.85930 1.21558 0.92623 1.37119 1.05336 0.91980 1.25954 1.04235 0.94902 0.94702 1.70105 1.37709 1.39664 1.10256 0.85280 0.78711 0.77913 0.78347 1.18759 1.20210 1.20397 1.61878 1.59213 1.02337 1.01664 1.21969 0.95914 0.90135 0.98477 1.21557 1.00684 0.98548 0.94641 1.21580 1.00939 0.95063 0.96796 1.21145 0.99956 0.95241 0.94515 0.92345 1.21731 1.01898 0.99689 0.96256 1.22153 0.98190 0.96659 0.89417 0.91504 0.91190 0.92525 0.93127 0.96488 0.85240 0.98832 1.02751 0.92705 0.93135 0.94253 0.93328 0.91004 0.91284 0.91500 0.92093 0.92418 0.91979 0.94386 0.91246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.94 8.45 71.98 0.61 -3.33 16 2 C 0.09 2.62 2.55 44.91 0.11 2.73 16 3 H 0.08 2.21 7.98 -2.38 -0.02 2.19 16 4 C 0.07 2.60 4.86 86.30 0.42 3.02 16 5 N -0.67 -30.14 6.21 -517.92 -3.22 -33.36 16 6 C 0.21 11.77 5.44 85.56 0.47 12.24 16 7 C -0.53 -31.31 9.32 25.60 0.24 -31.07 16 8 H 0.06 3.61 7.81 -2.91 -0.02 3.59 16 9 C 0.00 -0.02 5.46 84.66 0.46 0.45 16 10 N -0.94 -58.18 13.29 21.45 0.28 -57.90 16 11 Si 0.97 45.62 29.54 68.60 2.03 47.64 16 12 H -0.26 -11.90 7.11 99.48 0.71 -11.19 16 13 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 14 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 15 N -0.53 -15.27 4.33 -871.08 -3.77 -19.04 16 16 C 0.06 1.78 4.54 86.33 0.39 2.17 16 17 C -0.12 -3.00 6.09 30.65 0.19 -2.82 16 18 C -0.11 -2.18 5.29 30.67 0.16 -2.02 16 19 C -0.09 -1.92 2.88 -10.74 -0.03 -1.95 16 20 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 21 C -0.14 -2.21 9.20 71.98 0.66 -1.55 16 22 C 0.06 1.46 4.42 86.33 0.38 1.84 16 23 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 24 H 0.07 1.35 6.82 -2.38 -0.02 1.33 16 25 H 0.06 1.31 6.46 -2.38 -0.02 1.29 16 26 H 0.05 1.97 6.67 -2.39 -0.02 1.95 16 27 H 0.02 0.63 8.14 -2.39 -0.02 0.61 16 28 H 0.33 14.47 8.72 -89.69 -0.78 13.69 16 29 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 30 H -0.05 -2.71 8.14 -2.39 -0.02 -2.73 16 31 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 32 H 0.05 1.72 6.33 -2.39 -0.02 1.70 16 33 H 0.04 0.98 6.57 -2.39 -0.02 0.96 16 34 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 35 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 37 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 38 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 40 H 0.06 0.91 8.14 -2.38 -0.02 0.89 16 41 H 0.04 0.79 6.88 -2.39 -0.02 0.77 16 42 H 0.07 1.58 8.01 -2.39 -0.02 1.56 16 Total: -1.00 -65.37 321.46 -0.44 -65.81 By element: Atomic # 1 Polarization: 16.96 SS G_CDS: 0.18 Total: 17.14 kcal Atomic # 6 Polarization: -24.35 SS G_CDS: 4.06 Total: -20.29 kcal Atomic # 7 Polarization: -103.60 SS G_CDS: -6.70 Total: -110.30 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 2.03 Total: 47.64 kcal Total: -65.37 -0.44 -65.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000571040154.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.593 kcal (2) G-P(sol) polarization free energy of solvation -65.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds