Wall clock time and date at job start Mon Mar 30 2020 17:52:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47060 * 2 1 4 4 C 1.53001 * 109.46886 * 180.02562 * 3 2 1 5 5 N 1.46902 * 109.46901 * 180.02562 * 4 3 2 6 6 C 1.46839 * 111.00092 * 45.78796 * 5 4 3 7 7 C 1.53039 * 109.52305 * 185.83868 * 6 5 4 8 8 C 1.53125 * 109.27890 * 300.81995 * 7 6 5 9 9 N 1.46899 * 109.57365 * 177.58588 * 8 7 6 10 10 C 1.46900 * 110.99682 * 85.28728 * 9 8 7 11 11 C 1.50707 * 109.47140 * 179.97438 * 10 9 8 12 12 H 1.07994 * 119.99848 * 359.97438 * 11 10 9 13 13 C 1.37874 * 119.99920 * 180.02562 * 11 10 9 14 14 N 1.31516 * 120.00046 * 179.97438 * 13 11 10 15 15 Si 1.86804 * 120.00245 * 359.97438 * 13 11 10 16 16 H 1.48505 * 109.46792 * 90.00182 * 15 13 11 17 17 H 1.48498 * 109.47565 * 210.00238 * 15 13 11 18 18 H 1.48503 * 109.47178 * 330.00725 * 15 13 11 19 19 C 1.53118 * 109.15877 * 57.65365 * 8 7 6 20 20 C 1.46852 * 110.99971 * 169.99744 * 5 4 3 21 21 H 1.09002 * 109.47153 * 300.00319 * 1 2 3 22 22 H 1.08998 * 109.47533 * 59.99948 * 1 2 3 23 23 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.47153 * 239.99681 * 2 1 3 25 25 H 1.09001 * 109.46832 * 119.99872 * 2 1 3 26 26 H 1.09001 * 109.47194 * 299.99650 * 3 2 1 27 27 H 1.08992 * 109.47399 * 59.99823 * 3 2 1 28 28 H 1.09001 * 109.47109 * 299.99380 * 4 3 2 29 29 H 1.09002 * 109.47508 * 59.99571 * 4 3 2 30 30 H 1.09001 * 109.46400 * 305.85111 * 6 5 4 31 31 H 1.08995 * 109.46502 * 65.82322 * 6 5 4 32 32 H 1.08994 * 109.50793 * 180.87369 * 7 6 5 33 33 H 1.09003 * 109.50071 * 60.75960 * 7 6 5 34 34 H 1.08991 * 109.52310 * 297.74805 * 8 7 6 35 35 H 1.00897 * 111.00715 * 321.33609 * 9 8 7 36 36 H 1.09002 * 109.47579 * 299.99736 * 10 9 8 37 37 H 1.08998 * 109.47659 * 59.99980 * 10 9 8 38 38 H 0.96995 * 120.00145 * 179.97438 * 14 13 11 39 39 H 1.08998 * 109.49987 * 182.40758 * 19 8 7 40 40 H 1.09004 * 109.50544 * 62.28642 * 19 8 7 41 41 H 1.09005 * 109.46090 * 294.18098 * 20 5 4 42 42 H 1.09009 * 109.46391 * 54.14781 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0596 2.8275 0.0000 6 6 3.3342 3.6417 0.9833 7 6 3.7668 5.1041 0.8553 8 6 5.2759 5.2075 1.0931 9 7 5.7079 6.6002 0.9148 10 6 5.5312 7.3688 2.1542 11 6 5.9844 8.7890 1.9335 12 1 6.3660 9.0904 0.9692 13 6 5.9130 9.7033 2.9630 14 7 6.3090 10.9426 2.7706 15 14 5.2536 9.1819 4.6312 16 1 6.3734 8.6926 5.4751 17 1 4.6062 10.3432 5.2927 18 1 4.2573 8.0954 4.4522 19 6 6.0056 4.3128 0.0872 20 6 5.5081 2.8735 0.2375 21 1 -0.3633 0.5139 0.8900 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3635 -1.0276 0.0005 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 1.6767 1.9563 -0.8900 27 1 1.6766 1.9563 0.8899 28 1 3.9337 0.9286 0.8892 29 1 3.9330 0.9287 -0.8908 30 1 2.2625 3.5627 0.8005 31 1 3.5585 3.2832 1.9879 32 1 3.2397 5.7057 1.5957 33 1 3.5302 5.4673 -0.1448 34 1 5.5083 4.8809 2.1066 35 1 5.2189 7.0351 0.1469 36 1 4.4789 7.3630 2.4386 37 1 6.1249 6.9178 2.9493 38 1 6.2583 11.5859 3.4947 39 1 7.0779 4.3491 0.2790 40 1 5.8042 4.6636 -0.9250 41 1 5.7222 2.5185 1.2457 42 1 6.0154 2.2364 -0.4871 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000571634557.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:52:33 Heat of formation + Delta-G solvation = -16.932330 kcal Electronic energy + Delta-G solvation = -17513.760185 eV Core-core repulsion = 14913.637781 eV Total energy + Delta-G solvation = -2600.122404 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.27861 -36.40380 -34.63668 -32.68855 -31.17483 -30.65029 -28.48465 -26.51021 -23.80998 -23.12975 -22.00596 -21.00724 -20.61256 -19.60876 -16.84942 -15.98474 -15.85902 -14.97880 -14.80035 -14.41103 -14.14118 -13.99280 -13.57201 -13.36327 -13.16412 -12.73075 -12.49744 -12.40786 -12.00913 -11.76540 -11.53661 -11.35931 -11.25457 -11.00403 -10.92511 -10.79493 -10.70737 -10.52530 -10.23732 -10.05728 -9.70749 -9.26222 -8.57956 -8.30208 -7.38709 -6.04732 -4.02346 3.28938 3.35950 3.38194 3.85340 4.42645 4.60744 4.69323 4.83831 4.89986 5.03735 5.07650 5.19055 5.26921 5.28344 5.38199 5.42076 5.46702 5.52893 5.59028 5.62396 5.70526 5.76082 5.83946 5.91012 5.91983 6.01318 6.04076 6.10496 6.20989 6.29085 6.50934 6.62185 6.80978 7.05070 7.11965 7.13908 7.63182 7.94477 8.38894 8.67635 9.03899 9.57484 11.08704 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.037174 B = 0.004278 C = 0.004003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 753.039044 B = 6543.591355 C = 6992.612886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.123 4.123 3 C -0.125 4.125 4 C 0.056 3.944 5 N -0.538 5.538 6 C 0.055 3.945 7 C -0.146 4.146 8 C 0.084 3.916 9 N -0.675 5.675 10 C 0.165 3.835 11 C -0.515 4.515 12 H 0.079 0.921 13 C 0.068 3.932 14 N -0.901 5.901 15 Si 0.877 3.123 16 H -0.276 1.276 17 H -0.286 1.286 18 H -0.268 1.268 19 C -0.102 4.102 20 C 0.058 3.942 21 H 0.053 0.947 22 H 0.054 0.946 23 H 0.052 0.948 24 H 0.061 0.939 25 H 0.059 0.941 26 H 0.071 0.929 27 H 0.065 0.935 28 H 0.029 0.971 29 H 0.073 0.927 30 H 0.077 0.923 31 H 0.028 0.972 32 H 0.065 0.935 33 H 0.071 0.929 34 H 0.064 0.936 35 H 0.337 0.663 36 H -0.016 1.016 37 H 0.019 0.981 38 H 0.263 0.737 39 H 0.071 0.929 40 H 0.069 0.931 41 H 0.030 0.970 42 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.804 -21.534 -4.625 23.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.161 4.161 3 C -0.163 4.163 4 C -0.072 4.072 5 N -0.263 5.263 6 C -0.073 4.073 7 C -0.186 4.186 8 C -0.027 4.027 9 N -0.304 5.304 10 C 0.037 3.963 11 C -0.553 4.553 12 H 0.097 0.903 13 C -0.134 4.134 14 N -0.540 5.540 15 Si 0.705 3.295 16 H -0.202 1.202 17 H -0.212 1.212 18 H -0.193 1.193 19 C -0.141 4.141 20 C -0.070 4.070 21 H 0.072 0.928 22 H 0.074 0.926 23 H 0.071 0.929 24 H 0.080 0.920 25 H 0.077 0.923 26 H 0.090 0.910 27 H 0.084 0.916 28 H 0.048 0.952 29 H 0.091 0.909 30 H 0.095 0.905 31 H 0.047 0.953 32 H 0.084 0.916 33 H 0.089 0.911 34 H 0.082 0.918 35 H 0.154 0.846 36 H 0.001 0.999 37 H 0.037 0.963 38 H 0.073 0.927 39 H 0.090 0.910 40 H 0.088 0.912 41 H 0.048 0.952 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -8.183 -21.264 -4.857 23.296 hybrid contribution -1.132 -0.371 1.853 2.203 sum -9.315 -21.635 -3.004 23.746 Atomic orbital electron populations 1.21764 0.95794 1.01472 1.01935 1.21493 0.95942 0.96799 1.01891 1.21798 0.94868 0.96744 1.02860 1.22127 0.95106 0.89508 1.00488 1.62017 1.04240 1.09920 1.50119 1.22151 0.98490 0.93807 0.92839 1.22374 0.98550 0.95201 1.02469 1.21606 0.91364 0.91387 0.98361 1.60554 1.61105 1.00266 1.08491 1.20008 0.93960 0.94109 0.88250 1.21086 1.42142 0.91920 1.00180 0.90298 1.24911 0.95049 0.94803 0.98607 1.69901 1.47947 1.03294 1.32870 0.86827 0.79672 0.78318 0.84710 1.20185 1.21209 1.19313 1.21557 0.99871 0.92356 1.00289 1.22116 0.87512 0.98251 0.99171 0.92785 0.92638 0.92873 0.91979 0.92250 0.91021 0.91596 0.95248 0.90888 0.90514 0.95333 0.91646 0.91067 0.91762 0.84566 0.99859 0.96263 0.92673 0.90993 0.91228 0.95220 0.91013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.91 37.16 0.37 -0.69 16 2 C -0.12 -0.92 5.93 -26.73 -0.16 -1.08 16 3 C -0.13 -1.12 4.46 -26.73 -0.12 -1.24 16 4 C 0.06 0.56 5.27 -3.82 -0.02 0.54 16 5 N -0.54 -6.64 4.81 -234.67 -1.13 -7.77 16 6 C 0.06 0.72 4.85 -3.84 -0.02 0.70 16 7 C -0.15 -2.24 5.35 -26.65 -0.14 -2.38 16 8 C 0.08 1.44 2.53 -67.59 -0.17 1.26 16 9 N -0.68 -14.20 6.24 -107.86 -0.67 -14.87 16 10 C 0.16 4.06 4.31 -4.97 -0.02 4.04 16 11 C -0.51 -14.96 9.87 -34.44 -0.34 -15.30 16 12 H 0.08 2.48 8.06 -52.49 -0.42 2.06 16 13 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 14 N -0.90 -28.02 13.96 55.43 0.77 -27.24 16 15 Si 0.88 21.85 27.47 -169.99 -4.67 17.18 16 16 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 17 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 18 H -0.27 -6.45 6.54 56.52 0.37 -6.08 16 19 C -0.10 -1.50 5.70 -26.65 -0.15 -1.65 16 20 C 0.06 0.72 5.42 -3.83 -0.02 0.70 16 21 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 22 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 23 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 24 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 26 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.07 0.62 6.21 -51.93 -0.32 0.30 16 28 H 0.03 0.30 8.08 -51.93 -0.42 -0.12 16 29 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.08 0.90 5.81 -51.93 -0.30 0.60 16 31 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 1.07 7.55 -51.93 -0.39 0.68 16 33 H 0.07 1.10 8.10 -51.93 -0.42 0.68 16 34 H 0.06 1.16 7.80 -51.93 -0.41 0.75 16 35 H 0.34 6.93 8.44 -39.29 -0.33 6.60 16 36 H -0.02 -0.40 6.57 -51.93 -0.34 -0.74 16 37 H 0.02 0.49 7.48 -51.93 -0.39 0.10 16 38 H 0.26 7.64 8.31 -40.82 -0.34 7.31 16 39 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 40 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 41 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.07 0.79 8.12 -51.92 -0.42 0.37 16 LS Contribution 322.41 15.07 4.86 4.86 Total: -1.00 -30.28 322.41 -9.72 -39.99 By element: Atomic # 1 Polarization: 9.04 SS G_CDS: -7.98 Total: 1.05 kcal Atomic # 6 Polarization: -12.31 SS G_CDS: -0.89 Total: -13.20 kcal Atomic # 7 Polarization: -48.86 SS G_CDS: -1.03 Total: -49.88 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.67 Total: 17.18 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -30.28 -9.72 -39.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000571634557.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.059 kcal (2) G-P(sol) polarization free energy of solvation -30.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds