Wall clock time and date at job start Mon Mar 30 2020 17:52:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46898 * 110.99874 * 2 1 4 4 C 1.53009 * 109.47059 * 66.04791 * 3 2 1 5 5 C 1.50696 * 109.47060 * 180.02562 * 4 3 2 6 6 H 1.08000 * 120.00265 * 0.02562 * 5 4 3 7 7 C 1.37878 * 119.99916 * 179.97438 * 5 4 3 8 8 N 1.31519 * 119.99761 * 359.97438 * 7 5 4 9 9 Si 1.86793 * 120.00056 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47525 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.47123 * 120.00110 * 9 7 5 12 12 H 1.48504 * 109.47187 * 239.99814 * 9 7 5 13 13 C 1.46898 * 111.00085 * 236.05024 * 2 1 3 14 14 H 1.08994 * 109.60159 * 179.27818 * 13 2 1 15 15 C 1.53347 * 109.60373 * 299.76580 * 13 2 1 16 16 C 1.53071 * 108.41547 * 187.30330 * 15 13 2 17 17 C 1.50178 * 109.89060 * 311.08827 * 16 15 13 18 18 O 1.21284 * 118.24697 * 197.86681 * 17 16 15 19 19 N 1.33354 * 123.50625 * 17.57592 * 17 16 15 20 20 C 1.46495 * 117.94368 * 177.78051 * 19 17 16 21 21 C 1.45750 * 124.10653 * 357.80549 * 19 17 16 22 22 H 1.08999 * 109.46757 * 183.94723 * 1 2 3 23 23 H 1.08993 * 109.47090 * 303.95098 * 1 2 3 24 24 H 1.09005 * 109.46954 * 63.95492 * 1 2 3 25 25 H 1.08996 * 109.47055 * 186.04153 * 3 2 1 26 26 H 1.08997 * 109.47780 * 306.04961 * 3 2 1 27 27 H 1.09006 * 109.46538 * 299.99689 * 4 3 2 28 28 H 1.08997 * 109.46686 * 59.99500 * 4 3 2 29 29 H 0.96998 * 119.99855 * 180.02562 * 8 7 5 30 30 H 1.09000 * 109.67321 * 307.02412 * 15 13 2 31 31 H 1.09006 * 109.67504 * 67.55214 * 15 13 2 32 32 H 1.09001 * 109.40507 * 190.95610 * 16 15 13 33 33 H 1.09006 * 109.40405 * 71.21062 * 16 15 13 34 34 H 1.08998 * 109.47792 * 359.97438 * 20 19 17 35 35 H 1.08998 * 109.47689 * 120.00767 * 20 19 17 36 36 H 1.09007 * 109.47258 * 240.00140 * 20 19 17 37 37 H 1.09000 * 109.30154 * 139.36060 * 21 19 17 38 38 H 1.09003 * 109.30000 * 258.73323 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6314 2.0574 1.3184 5 6 2.1709 3.4645 1.3181 6 1 2.7183 3.8329 0.4630 7 6 1.9648 4.2820 2.4091 8 7 1.2970 3.8339 3.4497 9 14 2.6341 6.0260 2.4091 10 1 3.3423 6.2845 1.1297 11 1 1.5116 6.9870 2.5559 12 1 3.5801 6.1931 3.5416 13 6 1.9955 -0.7659 -1.1376 14 1 3.0850 -0.7403 -1.1228 15 6 1.5103 -2.2179 -1.0490 16 6 2.2173 -3.0312 -2.1361 17 6 2.1167 -2.3185 -3.4541 18 8 2.3223 -2.9531 -4.4670 19 7 1.8078 -1.0264 -3.5707 20 6 1.7918 -0.4430 -4.9143 21 6 1.4858 -0.1584 -2.4451 22 1 -0.3633 -1.0252 0.0707 23 1 -0.3633 0.5739 0.8524 24 1 -0.3633 0.4512 -0.9234 25 1 3.0797 1.3444 -0.1082 26 1 1.5611 1.9274 -0.8308 27 1 0.5471 2.0844 1.4265 28 1 2.0658 1.5014 2.1492 29 1 1.1517 4.4092 4.2171 30 1 1.7536 -2.6268 -0.0683 31 1 0.4322 -2.2548 -1.2053 32 1 1.7480 -4.0116 -2.2178 33 1 3.2673 -3.1548 -1.8707 34 1 2.0517 -1.2080 -5.6459 35 1 0.7960 -0.0562 -5.1307 36 1 2.5163 0.3698 -4.9662 37 1 1.9522 0.8152 -2.5959 38 1 0.4048 -0.0311 -2.3860 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000576421450.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:52:36 Heat of formation + Delta-G solvation = -33.263234 kcal Electronic energy + Delta-G solvation = -17713.340672 eV Core-core repulsion = 14976.677012 eV Total energy + Delta-G solvation = -2736.663660 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.66481 -38.15268 -35.37669 -33.88453 -32.77483 -29.93740 -28.43666 -27.05286 -26.11904 -24.72632 -23.46942 -21.19267 -19.98947 -18.46663 -16.86436 -16.58184 -16.37744 -15.90339 -14.86800 -14.69927 -14.47178 -14.43168 -13.71766 -13.46276 -13.26780 -12.85279 -12.53721 -12.22728 -12.08696 -11.87741 -11.77882 -11.30885 -11.16962 -11.15458 -10.97159 -10.67368 -10.51546 -9.95107 -9.73598 -9.44576 -9.16799 -8.82261 -8.38141 -7.86101 -6.04599 -4.07226 2.56562 2.94230 3.27822 3.35725 3.38980 4.16142 4.43916 4.53230 4.64795 4.70255 5.01335 5.18846 5.22997 5.31596 5.32841 5.41044 5.44652 5.54750 5.66502 5.71172 5.75001 5.86124 6.02437 6.10940 6.17091 6.26173 6.33807 6.44300 6.86500 7.29495 7.35570 7.45406 7.70931 7.81927 8.01111 8.07583 8.37060 9.00120 9.56941 11.06743 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.041056 B = 0.004849 C = 0.004536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.836845 B = 5772.416638 C = 6171.370933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.526 5.526 3 C 0.058 3.942 4 C 0.027 3.973 5 C -0.523 4.523 6 H 0.054 0.946 7 C 0.059 3.941 8 N -0.892 5.892 9 Si 0.891 3.109 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.283 1.283 13 C 0.071 3.929 14 H 0.089 0.911 15 C -0.117 4.117 16 C -0.131 4.131 17 C 0.516 3.484 18 O -0.565 6.565 19 N -0.601 5.601 20 C 0.068 3.932 21 C 0.076 3.924 22 H 0.061 0.939 23 H 0.082 0.918 24 H 0.023 0.977 25 H 0.062 0.938 26 H 0.023 0.977 27 H 0.018 0.982 28 H 0.025 0.975 29 H 0.260 0.740 30 H 0.089 0.911 31 H 0.069 0.931 32 H 0.101 0.899 33 H 0.101 0.899 34 H 0.090 0.910 35 H 0.058 0.942 36 H 0.060 0.940 37 H 0.078 0.922 38 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.802 -9.901 -10.661 14.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.248 5.248 3 C -0.068 4.068 4 C -0.010 4.010 5 C -0.562 4.562 6 H 0.072 0.928 7 C -0.142 4.142 8 N -0.531 5.531 9 Si 0.719 3.281 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.210 1.210 13 C -0.039 4.039 14 H 0.107 0.893 15 C -0.155 4.155 16 C -0.172 4.172 17 C 0.305 3.695 18 O -0.445 6.445 19 N -0.334 5.334 20 C -0.075 4.075 21 C -0.049 4.049 22 H 0.080 0.920 23 H 0.101 0.899 24 H 0.041 0.959 25 H 0.080 0.920 26 H 0.041 0.959 27 H 0.036 0.964 28 H 0.044 0.956 29 H 0.070 0.930 30 H 0.107 0.893 31 H 0.088 0.912 32 H 0.119 0.881 33 H 0.119 0.881 34 H 0.109 0.891 35 H 0.077 0.923 36 H 0.078 0.922 37 H 0.097 0.903 38 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -0.603 -10.392 -10.534 14.810 hybrid contribution 0.009 1.654 -0.610 1.763 sum -0.594 -8.737 -11.144 14.174 Atomic orbital electron populations 1.22537 0.88012 1.01442 1.01290 1.62429 1.07880 1.16377 1.38120 1.22423 0.98704 0.84969 1.00708 1.19110 0.96987 0.94084 0.90811 1.21208 1.35245 0.97723 1.01981 0.92775 1.24984 0.95239 0.98465 0.95551 1.69977 1.40743 1.36357 1.06069 0.86553 0.78763 0.84748 0.78017 1.19792 1.21033 1.20952 1.22047 1.00493 0.93779 0.87600 0.89275 1.21761 1.00298 0.94029 0.99365 1.21631 1.03919 0.99896 0.91706 1.20286 0.75730 0.81617 0.91860 1.90673 1.51395 1.64445 1.37990 1.47161 1.68226 1.09752 1.08224 1.21776 1.01565 0.99450 0.84688 1.22334 1.01424 0.94471 0.86648 0.92036 0.89936 0.95875 0.91969 0.95900 0.96357 0.95634 0.93008 0.89280 0.91225 0.88103 0.88081 0.89115 0.92318 0.92166 0.90324 0.91099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 8.64 60.07 0.52 0.74 16 2 N -0.53 -8.45 4.76 -234.72 -1.12 -9.56 16 3 C 0.06 1.13 4.35 -3.82 -0.02 1.11 16 4 C 0.03 0.68 4.90 -27.88 -0.14 0.54 16 5 C -0.52 -14.28 9.11 -34.44 -0.31 -14.60 16 6 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16 7 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 8 N -0.89 -26.20 13.29 55.43 0.74 -25.47 16 9 Si 0.89 21.15 29.54 -169.99 -5.02 16.13 16 10 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 11 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 12 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 13 C 0.07 0.92 2.30 -67.58 -0.16 0.76 16 14 H 0.09 1.19 8.03 -51.93 -0.42 0.77 16 15 C -0.12 -1.26 4.85 -26.52 -0.13 -1.39 16 16 C -0.13 -1.38 6.03 -28.10 -0.17 -1.55 16 17 C 0.52 6.98 7.47 -11.87 -0.09 6.89 16 18 O -0.57 -9.41 15.95 5.55 0.09 -9.32 16 19 N -0.60 -7.56 3.21 -182.86 -0.59 -8.14 16 20 C 0.07 0.75 10.47 59.84 0.63 1.38 16 21 C 0.08 0.94 5.04 -4.49 -0.02 0.92 16 22 H 0.06 0.77 6.50 -51.93 -0.34 0.44 16 23 H 0.08 1.41 6.30 -51.93 -0.33 1.08 16 24 H 0.02 0.32 6.09 -51.93 -0.32 0.00 16 25 H 0.06 1.20 8.01 -51.93 -0.42 0.78 16 26 H 0.02 0.43 7.16 -51.93 -0.37 0.06 16 27 H 0.02 0.47 6.47 -51.93 -0.34 0.14 16 28 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 29 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 30 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.07 0.74 6.85 -51.93 -0.36 0.38 16 32 H 0.10 0.95 8.14 -51.93 -0.42 0.52 16 33 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.09 1.09 6.59 -51.93 -0.34 0.75 16 35 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.08 1.01 7.20 -51.93 -0.37 0.63 16 38 H 0.07 0.88 5.90 -51.93 -0.31 0.57 16 LS Contribution 296.68 15.07 4.47 4.47 Total: -1.00 -30.99 296.68 -7.39 -38.38 By element: Atomic # 1 Polarization: 3.13 SS G_CDS: -5.98 Total: -2.85 kcal Atomic # 6 Polarization: -3.66 SS G_CDS: 0.02 Total: -3.64 kcal Atomic # 7 Polarization: -42.21 SS G_CDS: -0.97 Total: -43.17 kcal Atomic # 8 Polarization: -9.41 SS G_CDS: 0.09 Total: -9.32 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -30.99 -7.39 -38.38 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000576421450.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.116 kcal (2) G-P(sol) polarization free energy of solvation -30.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds