Wall clock time and date at job start Mon Mar 30 2020 17:52:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46898 * 110.99874 * 2 1 4 4 C 1.53009 * 109.47059 * 66.04791 * 3 2 1 5 5 C 1.50696 * 109.47060 * 180.02562 * 4 3 2 6 6 H 1.08000 * 120.00265 * 0.02562 * 5 4 3 7 7 C 1.37878 * 119.99916 * 179.97438 * 5 4 3 8 8 N 1.31519 * 119.99761 * 359.97438 * 7 5 4 9 9 Si 1.86793 * 120.00056 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47525 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.47123 * 120.00110 * 9 7 5 12 12 H 1.48504 * 109.47187 * 239.99814 * 9 7 5 13 13 C 1.46898 * 111.00085 * 236.05024 * 2 1 3 14 14 H 1.08994 * 109.60159 * 179.27818 * 13 2 1 15 15 C 1.53347 * 109.60373 * 299.76580 * 13 2 1 16 16 C 1.53071 * 108.41547 * 187.30330 * 15 13 2 17 17 C 1.50178 * 109.89060 * 311.08827 * 16 15 13 18 18 O 1.21284 * 118.24697 * 197.86681 * 17 16 15 19 19 N 1.33354 * 123.50625 * 17.57592 * 17 16 15 20 20 C 1.46495 * 117.94368 * 177.78051 * 19 17 16 21 21 C 1.45750 * 124.10653 * 357.80549 * 19 17 16 22 22 H 1.08999 * 109.46757 * 183.94723 * 1 2 3 23 23 H 1.08993 * 109.47090 * 303.95098 * 1 2 3 24 24 H 1.09005 * 109.46954 * 63.95492 * 1 2 3 25 25 H 1.08996 * 109.47055 * 186.04153 * 3 2 1 26 26 H 1.08997 * 109.47780 * 306.04961 * 3 2 1 27 27 H 1.09006 * 109.46538 * 299.99689 * 4 3 2 28 28 H 1.08997 * 109.46686 * 59.99500 * 4 3 2 29 29 H 0.96998 * 119.99855 * 180.02562 * 8 7 5 30 30 H 1.09000 * 109.67321 * 307.02412 * 15 13 2 31 31 H 1.09006 * 109.67504 * 67.55214 * 15 13 2 32 32 H 1.09001 * 109.40507 * 190.95610 * 16 15 13 33 33 H 1.09006 * 109.40405 * 71.21062 * 16 15 13 34 34 H 1.08998 * 109.47792 * 359.97438 * 20 19 17 35 35 H 1.08998 * 109.47689 * 120.00767 * 20 19 17 36 36 H 1.09007 * 109.47258 * 240.00140 * 20 19 17 37 37 H 1.09000 * 109.30154 * 139.36060 * 21 19 17 38 38 H 1.09003 * 109.30000 * 258.73323 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6314 2.0574 1.3184 5 6 2.1709 3.4645 1.3181 6 1 2.7183 3.8329 0.4630 7 6 1.9648 4.2820 2.4091 8 7 1.2970 3.8339 3.4497 9 14 2.6341 6.0260 2.4091 10 1 3.3423 6.2845 1.1297 11 1 1.5116 6.9870 2.5559 12 1 3.5801 6.1931 3.5416 13 6 1.9955 -0.7659 -1.1376 14 1 3.0850 -0.7403 -1.1228 15 6 1.5103 -2.2179 -1.0490 16 6 2.2173 -3.0312 -2.1361 17 6 2.1167 -2.3185 -3.4541 18 8 2.3223 -2.9531 -4.4670 19 7 1.8078 -1.0264 -3.5707 20 6 1.7918 -0.4430 -4.9143 21 6 1.4858 -0.1584 -2.4451 22 1 -0.3633 -1.0252 0.0707 23 1 -0.3633 0.5739 0.8524 24 1 -0.3633 0.4512 -0.9234 25 1 3.0797 1.3444 -0.1082 26 1 1.5611 1.9274 -0.8308 27 1 0.5471 2.0844 1.4265 28 1 2.0658 1.5014 2.1492 29 1 1.1517 4.4092 4.2171 30 1 1.7536 -2.6268 -0.0683 31 1 0.4322 -2.2548 -1.2053 32 1 1.7480 -4.0116 -2.2178 33 1 3.2673 -3.1548 -1.8707 34 1 2.0517 -1.2080 -5.6459 35 1 0.7960 -0.0562 -5.1307 36 1 2.5163 0.3698 -4.9662 37 1 1.9522 0.8152 -2.5959 38 1 0.4048 -0.0311 -2.3860 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000576421450.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:52:36 Heat of formation + Delta-G solvation = -54.423748 kcal Electronic energy + Delta-G solvation = -17714.258261 eV Core-core repulsion = 14976.677012 eV Total energy + Delta-G solvation = -2737.581249 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.70082 -39.37047 -36.59774 -35.32365 -34.33583 -31.62041 -29.57512 -28.02032 -27.64335 -25.99479 -24.87468 -22.49761 -21.45555 -19.48146 -18.62497 -17.64601 -17.61012 -17.02796 -16.49148 -16.14765 -15.85888 -15.42263 -14.97191 -14.78343 -14.27946 -14.23153 -13.86633 -13.56994 -13.26322 -13.17423 -12.92305 -12.83375 -12.67082 -12.57609 -12.34381 -12.13509 -11.76220 -11.67927 -11.26759 -11.13979 -10.79169 -10.51402 -9.85255 -9.13500 -8.17780 -6.28017 1.41585 1.42641 1.54452 1.54823 1.98020 2.41879 3.00956 3.16515 3.53333 3.69936 3.73373 4.03163 4.24175 4.32922 4.37456 4.43575 4.45918 4.48587 4.57415 4.68701 4.74612 4.86158 4.90324 4.90747 5.05738 5.14360 5.17273 5.23971 5.32257 5.50787 5.70581 5.81938 6.11297 6.21764 6.34696 6.39961 6.90230 7.05956 7.41163 8.94356 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.041056 B = 0.004849 C = 0.004536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.836845 B = 5772.416638 C = 6171.370933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.535 5.535 3 C 0.076 3.924 4 C 0.034 3.966 5 C -0.541 4.541 6 H 0.060 0.940 7 C 0.003 3.997 8 N -0.931 5.931 9 Si 0.961 3.039 10 H -0.262 1.262 11 H -0.280 1.280 12 H -0.280 1.280 13 C 0.072 3.928 14 H 0.088 0.912 15 C -0.107 4.107 16 C -0.123 4.123 17 C 0.509 3.491 18 O -0.601 6.601 19 N -0.601 5.601 20 C 0.065 3.935 21 C 0.083 3.917 22 H 0.088 0.912 23 H 0.052 0.948 24 H 0.034 0.966 25 H 0.062 0.938 26 H 0.029 0.971 27 H -0.002 1.002 28 H -0.008 1.008 29 H 0.263 0.737 30 H 0.096 0.904 31 H 0.076 0.924 32 H 0.116 0.884 33 H 0.114 0.886 34 H 0.078 0.922 35 H 0.073 0.927 36 H 0.071 0.929 37 H 0.076 0.924 38 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.548 -9.880 -11.532 15.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.257 5.257 3 C -0.051 4.051 4 C -0.004 4.004 5 C -0.580 4.580 6 H 0.078 0.922 7 C -0.195 4.195 8 N -0.571 5.571 9 Si 0.786 3.214 10 H -0.186 1.186 11 H -0.205 1.205 12 H -0.206 1.206 13 C -0.038 4.038 14 H 0.106 0.894 15 C -0.145 4.145 16 C -0.163 4.163 17 C 0.300 3.700 18 O -0.484 6.484 19 N -0.333 5.333 20 C -0.078 4.078 21 C -0.042 4.042 22 H 0.106 0.894 23 H 0.071 0.929 24 H 0.053 0.947 25 H 0.081 0.919 26 H 0.047 0.953 27 H 0.017 0.983 28 H 0.011 0.989 29 H 0.071 0.929 30 H 0.114 0.886 31 H 0.094 0.906 32 H 0.135 0.865 33 H 0.132 0.868 34 H 0.097 0.903 35 H 0.092 0.908 36 H 0.090 0.910 37 H 0.094 0.906 38 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -0.352 -10.367 -11.415 15.424 hybrid contribution -0.089 1.619 -0.346 1.658 sum -0.441 -8.748 -11.762 14.665 Atomic orbital electron populations 1.22517 0.87221 1.02734 1.00525 1.62297 1.08671 1.14523 1.40252 1.22020 0.98795 0.86671 0.97617 1.18948 0.95263 0.93486 0.92655 1.21663 1.35090 0.99024 1.02174 0.92204 1.25896 0.95483 1.02934 0.95176 1.70106 1.42110 1.38085 1.06835 0.85456 0.78159 0.79347 0.78410 1.18582 1.20531 1.20589 1.22077 1.00394 0.94623 0.86663 0.89431 1.21699 1.00655 0.92300 0.99863 1.21634 1.04880 1.00044 0.89740 1.20825 0.75024 0.81728 0.92464 1.90662 1.53173 1.65199 1.39383 1.47244 1.67582 1.09682 1.08774 1.21872 1.02841 0.99345 0.83721 1.22234 1.01551 0.94132 0.86264 0.89351 0.92910 0.94726 0.91922 0.95320 0.98346 0.98929 0.92856 0.88570 0.90550 0.86544 0.86825 0.90319 0.90835 0.90996 0.90598 0.90650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.50 8.64 127.69 1.10 1.61 16 2 N -0.53 -16.57 4.76 -896.52 -4.27 -20.83 16 3 C 0.08 2.91 4.35 86.31 0.38 3.28 16 4 C 0.03 1.71 4.90 29.85 0.15 1.86 16 5 C -0.54 -29.71 9.11 25.60 0.23 -29.48 16 6 H 0.06 3.14 7.74 -2.91 -0.02 3.12 16 7 C 0.00 0.17 5.46 84.65 0.46 0.64 16 8 N -0.93 -55.58 13.29 21.45 0.28 -55.29 16 9 Si 0.96 43.23 29.54 68.60 2.03 45.26 16 10 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 11 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 12 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 13 C 0.07 1.71 2.30 45.00 0.10 1.82 16 14 H 0.09 2.15 8.03 -2.39 -0.02 2.13 16 15 C -0.11 -2.03 4.85 30.73 0.15 -1.88 16 16 C -0.12 -2.27 6.03 29.71 0.18 -2.09 16 17 C 0.51 12.86 7.47 87.71 0.66 13.51 16 18 O -0.60 -19.41 15.95 -3.04 -0.05 -19.46 16 19 N -0.60 -13.96 3.21 -851.63 -2.73 -16.69 16 20 C 0.06 1.32 10.47 127.77 1.34 2.66 16 21 C 0.08 1.87 5.04 86.49 0.44 2.31 16 22 H 0.09 2.02 6.50 -2.39 -0.02 2.00 16 23 H 0.05 1.82 6.30 -2.39 -0.02 1.80 16 24 H 0.03 0.90 6.09 -2.38 -0.01 0.88 16 25 H 0.06 2.37 8.01 -2.39 -0.02 2.35 16 26 H 0.03 1.05 7.16 -2.39 -0.02 1.04 16 27 H 0.00 -0.09 6.47 -2.38 -0.02 -0.11 16 28 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 29 H 0.26 14.73 8.31 -92.71 -0.77 13.96 16 30 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 31 H 0.08 1.37 6.85 -2.38 -0.02 1.35 16 32 H 0.12 1.84 8.14 -2.39 -0.02 1.82 16 33 H 0.11 1.85 8.14 -2.38 -0.02 1.83 16 34 H 0.08 1.83 6.59 -2.39 -0.02 1.81 16 35 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.07 1.29 8.14 -2.38 -0.02 1.27 16 37 H 0.08 1.78 7.20 -2.39 -0.02 1.77 16 38 H 0.08 1.67 5.90 -2.39 -0.01 1.66 16 Total: -1.00 -66.78 296.68 1.47 -65.31 By element: Atomic # 1 Polarization: 6.45 SS G_CDS: 1.03 Total: 7.48 kcal Atomic # 6 Polarization: -10.95 SS G_CDS: 5.18 Total: -5.77 kcal Atomic # 7 Polarization: -86.11 SS G_CDS: -6.72 Total: -92.82 kcal Atomic # 8 Polarization: -19.41 SS G_CDS: -0.05 Total: -19.46 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.26 kcal Total: -66.78 1.47 -65.31 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000576421450.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.887 kcal (2) G-P(sol) polarization free energy of solvation -66.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds