Wall clock time and date at job start Mon Mar 30 2020 17:52:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.46871 * 2 1 4 4 C 1.52997 * 109.47048 * 120.00202 * 2 1 3 5 5 N 1.46905 * 109.46869 * 175.00133 * 4 2 1 6 6 C 1.46901 * 110.99618 * 179.97438 * 5 4 2 7 7 C 1.50702 * 109.46938 * 179.97438 * 6 5 4 8 8 H 1.08007 * 119.99917 * 359.97438 * 7 6 5 9 9 C 1.37875 * 120.00265 * 180.02562 * 7 6 5 10 10 N 1.31517 * 119.99634 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 120.00250 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.47190 * 89.99533 * 11 9 7 13 13 H 1.48497 * 109.46991 * 209.99541 * 11 9 7 14 14 H 1.48500 * 109.46945 * 329.99720 * 11 9 7 15 15 N 1.46901 * 109.46919 * 239.99982 * 2 1 3 16 16 C 1.46854 * 111.00034 * 60.00085 * 15 2 1 17 17 C 1.53029 * 109.52283 * 174.15832 * 16 15 2 18 18 C 1.53126 * 109.27795 * 59.18140 * 17 16 15 19 19 C 1.52998 * 109.52128 * 182.44116 * 18 17 16 20 20 C 1.53124 * 109.15878 * 302.34185 * 18 17 16 21 21 C 1.46843 * 111.00022 * 295.79207 * 15 2 1 22 22 H 1.08995 * 109.47394 * 180.02562 * 1 2 3 23 23 H 1.09005 * 109.47129 * 300.00167 * 1 2 3 24 24 H 1.09000 * 109.47023 * 59.99895 * 1 2 3 25 25 H 1.08999 * 109.46792 * 294.99584 * 4 2 1 26 26 H 1.08996 * 109.47271 * 55.00093 * 4 2 1 27 27 H 1.00903 * 110.99646 * 303.95066 * 5 4 2 28 28 H 1.08998 * 109.47223 * 299.99458 * 6 5 4 29 29 H 1.08999 * 109.47498 * 60.00177 * 6 5 4 30 30 H 0.96998 * 119.99749 * 180.02562 * 10 9 7 31 31 H 1.08999 * 109.45788 * 54.14266 * 16 15 2 32 32 H 1.09001 * 109.46218 * 294.17869 * 16 15 2 33 33 H 1.08994 * 109.50822 * 299.23828 * 17 16 15 34 34 H 1.09001 * 109.50199 * 179.11868 * 17 16 15 35 35 H 1.08998 * 109.52297 * 62.25132 * 18 17 16 36 36 H 1.08997 * 109.47695 * 59.99499 * 19 18 17 37 37 H 1.09001 * 109.47253 * 179.97438 * 19 18 17 38 38 H 1.09004 * 109.47036 * 299.99365 * 19 18 17 39 39 H 1.08997 * 109.50088 * 177.59509 * 20 18 17 40 40 H 1.09004 * 109.50324 * 297.71684 * 20 18 17 41 41 H 1.09001 * 109.45906 * 305.85080 * 21 15 2 42 42 H 1.08997 * 109.46476 * 65.82626 * 21 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5041 -0.8267 1.1903 6 6 4.0304 -1.5149 2.3767 7 6 5.5317 -1.6044 2.2806 8 1 6.0436 -1.1918 1.4238 9 6 6.2517 -2.2141 3.2861 10 7 5.6283 -2.7170 4.3292 11 14 8.1126 -2.3245 3.1674 12 1 8.7208 -1.1255 3.7981 13 1 8.5818 -3.5454 3.8704 14 1 8.5145 -2.3901 1.7393 15 7 2.0196 -0.6925 -1.1995 16 6 1.5488 -0.0266 -2.4207 17 6 2.1935 -0.6842 -3.6428 18 6 1.8214 -2.1693 -3.6730 19 6 2.5126 -2.8455 -4.8588 20 6 2.2799 -2.8288 -2.3694 21 6 1.6327 -2.1090 -1.1841 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.7517 -0.1583 2.1369 26 1 1.6054 -1.7198 1.2951 27 1 3.7996 -1.2884 0.3432 28 1 3.7559 -0.9571 3.2720 29 1 3.6096 -2.5189 2.4308 30 1 6.1348 -3.1456 5.0367 31 1 1.8234 1.0277 -2.3883 32 1 0.4647 -0.1174 -2.4889 33 1 3.2769 -0.5817 -3.5822 34 1 1.8318 -0.1999 -4.5499 35 1 0.7409 -2.2721 -3.7730 36 1 3.5929 -2.7441 -4.7558 37 1 2.2475 -3.9026 -4.8792 38 1 2.1899 -2.3717 -5.7859 39 1 1.9800 -3.8767 -2.3667 40 1 3.3648 -2.7600 -2.2887 41 1 1.9683 -2.5671 -0.2538 42 1 0.5482 -2.1900 -1.2582 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000581305684.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:52:48 Heat of formation + Delta-G solvation = -15.600545 kcal Electronic energy + Delta-G solvation = -18120.781620 eV Core-core repulsion = 15520.716966 eV Total energy + Delta-G solvation = -2600.064654 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.55867 -36.24104 -34.14414 -32.23474 -30.74669 -30.62763 -27.15639 -27.08911 -24.28881 -23.16639 -22.30338 -21.19290 -20.17100 -19.01631 -16.34823 -16.08640 -15.01477 -14.75607 -14.56680 -14.43900 -14.34257 -13.86743 -13.40100 -13.05887 -12.78210 -12.41665 -12.30456 -12.23922 -11.79866 -11.68709 -11.55355 -11.34223 -11.03509 -10.92759 -10.76683 -10.62373 -10.51743 -10.42092 -10.14862 -10.03069 -9.74296 -9.08772 -8.40088 -7.99800 -7.08431 -5.96001 -3.96928 3.37122 3.42415 3.47022 4.07283 4.49581 4.77306 4.81781 4.83823 5.03780 5.27572 5.35069 5.37798 5.39904 5.40609 5.50048 5.57243 5.67200 5.68480 5.72565 5.83790 5.89964 5.90736 5.94090 5.99576 6.10687 6.15857 6.18273 6.21641 6.24693 6.41361 6.51628 6.54315 7.34297 7.36316 7.39496 7.54291 7.89014 8.23711 8.60111 8.80725 9.14246 9.67815 11.15329 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.023862 B = 0.005707 C = 0.004960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.132979 B = 4904.821062 C = 5644.054756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.084 3.916 3 H 0.088 0.912 4 C 0.067 3.933 5 N -0.683 5.683 6 C 0.193 3.807 7 C -0.508 4.508 8 H 0.062 0.938 9 C 0.054 3.946 10 N -0.900 5.900 11 Si 0.898 3.102 12 H -0.281 1.281 13 H -0.288 1.288 14 H -0.274 1.274 15 N -0.521 5.521 16 C 0.056 3.944 17 C -0.111 4.111 18 C -0.092 4.092 19 C -0.145 4.145 20 C -0.112 4.112 21 C 0.049 3.951 22 H 0.053 0.947 23 H 0.060 0.940 24 H 0.054 0.946 25 H 0.064 0.936 26 H 0.015 0.985 27 H 0.340 0.660 28 H 0.024 0.976 29 H -0.018 1.018 30 H 0.260 0.740 31 H 0.072 0.928 32 H 0.029 0.971 33 H 0.073 0.927 34 H 0.060 0.940 35 H 0.061 0.939 36 H 0.057 0.943 37 H 0.051 0.949 38 H 0.050 0.950 39 H 0.062 0.938 40 H 0.075 0.925 41 H 0.080 0.920 42 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.781 2.189 -15.249 18.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.025 4.025 3 H 0.106 0.894 4 C -0.064 4.064 5 N -0.315 5.315 6 C 0.066 3.934 7 C -0.547 4.547 8 H 0.080 0.920 9 C -0.147 4.147 10 N -0.540 5.540 11 Si 0.726 3.274 12 H -0.207 1.207 13 H -0.214 1.214 14 H -0.198 1.198 15 N -0.245 5.245 16 C -0.072 4.072 17 C -0.149 4.149 18 C -0.111 4.111 19 C -0.203 4.203 20 C -0.150 4.150 21 C -0.079 4.079 22 H 0.072 0.928 23 H 0.079 0.921 24 H 0.073 0.927 25 H 0.083 0.917 26 H 0.033 0.967 27 H 0.159 0.841 28 H 0.042 0.958 29 H -0.001 1.001 30 H 0.069 0.931 31 H 0.090 0.910 32 H 0.048 0.952 33 H 0.091 0.909 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.076 0.924 37 H 0.071 0.929 38 H 0.069 0.931 39 H 0.080 0.920 40 H 0.093 0.907 41 H 0.098 0.902 42 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -10.112 2.739 -14.812 18.142 hybrid contribution -0.250 -1.087 -0.014 1.115 sum -10.362 1.652 -14.826 18.163 Atomic orbital electron populations 1.22453 0.98269 1.01823 1.01886 1.21813 0.91363 0.99188 0.90100 0.89413 1.21936 0.91645 0.97252 0.95564 1.60541 1.05617 1.58373 1.06934 1.19541 0.94793 0.91022 0.88036 1.21212 0.91660 1.36073 1.05757 0.91967 1.24988 0.98717 0.95586 0.95366 1.69971 1.35549 1.39135 1.09380 0.86500 0.85451 0.77339 0.78119 1.20669 1.21403 1.19847 1.62055 1.59373 1.01717 1.01367 1.22051 0.96686 0.98373 0.90063 1.21645 1.01898 0.94712 0.96627 1.21167 0.99460 0.95345 0.95117 1.21810 1.00956 1.00083 0.97434 1.21658 1.01923 0.98180 0.93238 1.22162 0.97128 0.89151 0.99448 0.92753 0.92057 0.92737 0.91742 0.96680 0.84132 0.95780 1.00050 0.93052 0.91004 0.95250 0.90852 0.92141 0.92062 0.92431 0.92946 0.93079 0.91979 0.90654 0.90209 0.95332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.25 8.50 37.16 0.32 -1.94 16 2 C 0.08 1.24 2.72 -67.71 -0.18 1.06 16 3 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 4 C 0.07 1.22 4.60 -3.82 -0.02 1.20 16 5 N -0.68 -15.28 6.48 -115.06 -0.75 -16.03 16 6 C 0.19 5.24 5.44 -4.97 -0.03 5.21 16 7 C -0.51 -14.85 9.32 -34.44 -0.32 -15.17 16 8 H 0.06 1.80 7.81 -52.48 -0.41 1.39 16 9 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 10 N -0.90 -27.50 13.29 55.43 0.74 -26.76 16 11 Si 0.90 22.19 29.54 -169.99 -5.02 17.17 16 12 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 13 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 14 H -0.27 -6.63 7.11 56.52 0.40 -6.22 16 15 N -0.52 -7.40 3.83 -226.69 -0.87 -8.27 16 16 C 0.06 0.67 4.89 -3.83 -0.02 0.65 16 17 C -0.11 -1.20 5.38 -26.65 -0.14 -1.34 16 18 C -0.09 -0.98 2.79 -90.49 -0.25 -1.23 16 19 C -0.15 -1.36 9.20 37.16 0.34 -1.02 16 20 C -0.11 -1.39 5.38 -26.65 -0.14 -1.53 16 21 C 0.05 0.68 4.40 -3.83 -0.02 0.66 16 22 H 0.05 0.67 6.63 -51.93 -0.34 0.33 16 23 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 24 H 0.05 0.60 6.54 -51.93 -0.34 0.26 16 25 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 26 H 0.02 0.28 6.51 -51.93 -0.34 -0.06 16 27 H 0.34 7.54 7.39 -39.29 -0.29 7.25 16 28 H 0.02 0.70 8.14 -51.93 -0.42 0.28 16 29 H -0.02 -0.52 8.14 -51.93 -0.42 -0.95 16 30 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 31 H 0.07 0.84 8.12 -51.93 -0.42 0.41 16 32 H 0.03 0.33 6.63 -51.93 -0.34 -0.01 16 33 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 39 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 41 H 0.08 1.29 5.79 -51.93 -0.30 0.98 16 42 H 0.03 0.37 6.71 -51.93 -0.35 0.03 16 LS Contribution 318.83 15.07 4.80 4.80 Total: -1.00 -29.98 318.83 -9.43 -39.41 By element: Atomic # 1 Polarization: 9.41 SS G_CDS: -7.77 Total: 1.65 kcal Atomic # 6 Polarization: -11.41 SS G_CDS: -0.56 Total: -11.97 kcal Atomic # 7 Polarization: -50.18 SS G_CDS: -0.88 Total: -51.06 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -29.98 -9.43 -39.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000581305684.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.806 kcal (2) G-P(sol) polarization free energy of solvation -29.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds