Wall clock time and date at job start Mon Mar 30 2020 17:52:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46845 * 110.99960 * 2 1 4 4 C 1.53035 * 109.52333 * 185.84100 * 3 2 1 5 5 C 1.53123 * 109.27899 * 300.82189 * 4 3 2 6 6 C 1.53118 * 109.15843 * 57.65433 * 5 4 3 7 7 C 1.52998 * 109.50202 * 182.40719 * 6 5 4 8 8 C 1.53004 * 109.50459 * 62.28871 * 6 5 4 9 9 C 1.46848 * 110.99934 * 124.21459 * 2 1 3 10 10 H 1.09003 * 109.45921 * 294.16347 * 9 2 1 11 11 C 1.52993 * 109.46613 * 54.14258 * 9 2 1 12 12 N 1.46897 * 109.47114 * 187.28876 * 11 9 2 13 13 C 1.46901 * 111.00215 * 183.27459 * 12 11 9 14 14 C 1.50693 * 109.47729 * 180.02562 * 13 12 11 15 15 H 1.08001 * 119.99567 * 0.02562 * 14 13 12 16 16 C 1.37876 * 120.00622 * 180.02562 * 14 13 12 17 17 N 1.31513 * 119.99424 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 120.00200 * 180.02562 * 16 14 13 19 19 H 1.48492 * 109.47048 * 59.99916 * 18 16 14 20 20 H 1.48501 * 109.47239 * 299.99992 * 18 16 14 21 21 H 1.48505 * 109.47049 * 180.02562 * 18 16 14 22 22 H 1.09000 * 109.47197 * 289.08992 * 1 2 3 23 23 H 1.08996 * 109.47244 * 49.08865 * 1 2 3 24 24 H 1.09001 * 109.46756 * 169.08856 * 1 2 3 25 25 H 1.08999 * 109.46234 * 305.85260 * 3 2 1 26 26 H 1.08992 * 109.46160 * 65.83575 * 3 2 1 27 27 H 1.09003 * 109.50443 * 60.76347 * 4 3 2 28 28 H 1.09003 * 109.50676 * 180.87981 * 4 3 2 29 29 H 1.08992 * 109.52148 * 177.55818 * 5 4 3 30 30 H 1.08997 * 109.52064 * 297.68582 * 5 4 3 31 31 H 1.09004 * 109.47489 * 188.32816 * 7 6 5 32 32 H 1.09001 * 109.47355 * 308.33011 * 7 6 5 33 33 H 1.08996 * 109.47345 * 68.32771 * 7 6 5 34 34 H 1.08995 * 109.46947 * 300.19523 * 8 6 5 35 35 H 1.08998 * 109.47025 * 60.19770 * 8 6 5 36 36 H 1.09003 * 109.46903 * 180.19479 * 8 6 5 37 37 H 1.09002 * 109.47202 * 67.28568 * 11 9 2 38 38 H 1.09001 * 109.47080 * 307.29545 * 11 9 2 39 39 H 1.00906 * 110.99783 * 59.33006 * 12 11 9 40 40 H 1.09003 * 109.46565 * 59.99926 * 13 12 11 41 41 H 1.08998 * 109.47267 * 300.00579 * 13 12 11 42 42 H 0.96996 * 120.00589 * 359.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3709 0.0000 4 6 3.5181 1.3342 -0.1468 5 6 4.1188 0.5369 1.0143 6 6 3.5182 -0.8715 1.0207 7 6 4.0680 -1.6559 2.2137 8 6 3.8876 -1.5904 -0.2784 9 6 1.9953 -0.7709 1.1337 10 1 1.7326 -0.2708 2.0660 11 6 1.3891 -2.1755 1.1203 12 7 1.7767 -2.8878 2.3452 13 6 1.2765 -4.2689 2.3318 14 6 1.6921 -4.9662 3.6015 15 1 2.2697 -4.4361 4.3443 16 6 1.3350 -6.2807 3.8148 17 7 0.6321 -6.9262 2.9099 18 14 1.8497 -7.1447 5.3890 19 1 1.2821 -6.4246 6.5571 20 1 3.3315 -7.1552 5.4862 21 1 1.3451 -8.5413 5.3748 22 1 -0.3633 0.3361 0.9711 23 1 -0.3633 0.6730 -0.7766 24 1 -0.3633 -1.0091 -0.1945 25 1 1.5635 1.9257 -0.8330 26 1 1.7327 1.8607 0.9376 27 1 3.7813 0.8568 -1.0907 28 1 3.9099 2.3512 -0.1311 29 1 5.1997 0.4714 0.8904 30 1 3.8897 1.0360 1.9558 31 1 3.7590 -2.6984 2.1368 32 1 5.1566 -1.5989 2.2155 33 1 3.6804 -1.2294 3.1388 34 1 3.4969 -1.0298 -1.1276 35 1 4.9723 -1.6618 -0.3583 36 1 3.4569 -2.5916 -0.2748 37 1 1.7561 -2.7214 0.2511 38 1 0.3027 -2.1020 1.0710 39 1 1.4572 -2.3956 3.1661 40 1 1.6921 -4.7974 1.4738 41 1 0.1888 -4.2608 2.2615 42 1 0.3646 -6.4775 2.0927 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000582841572.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:52:51 Heat of formation + Delta-G solvation = -23.602317 kcal Electronic energy + Delta-G solvation = -18644.049876 eV Core-core repulsion = 16043.638239 eV Total energy + Delta-G solvation = -2600.411637 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.13688 -37.23697 -35.87334 -34.91416 -32.83333 -29.42739 -28.12699 -27.56559 -27.40838 -25.48465 -23.75901 -22.32736 -22.08509 -19.43847 -18.85524 -17.01518 -16.70841 -16.45190 -15.89232 -15.65315 -15.40567 -15.01100 -14.98543 -14.26716 -14.15610 -13.84134 -13.50138 -13.29346 -13.17087 -13.04762 -12.88131 -12.68983 -12.48285 -12.36191 -12.18456 -12.05822 -11.91841 -11.77349 -11.28639 -11.05806 -11.00781 -10.68774 -10.59763 -9.29157 -8.99682 -8.70117 -6.41014 1.53964 1.62661 1.82083 2.55731 2.81609 3.14336 3.53536 3.74152 3.85834 3.95985 4.13620 4.25540 4.33815 4.41402 4.45897 4.54690 4.57069 4.66664 4.72820 4.78302 4.83564 4.91562 4.94403 4.96793 5.01538 5.04286 5.08029 5.15741 5.25986 5.31607 5.35357 5.47774 5.67978 5.70885 5.94872 6.00837 6.10080 6.17803 6.38717 6.52840 6.64934 7.41253 8.69433 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.036935 B = 0.005683 C = 0.005263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 757.907428 B = 4926.080889 C = 5318.969543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.543 5.543 3 C 0.056 3.944 4 C -0.114 4.114 5 C -0.109 4.109 6 C -0.044 4.044 7 C -0.137 4.137 8 C -0.125 4.125 9 C 0.113 3.887 10 H 0.027 0.973 11 C 0.063 3.937 12 N -0.659 5.659 13 C 0.197 3.803 14 C -0.606 4.606 15 H 0.058 0.942 16 C -0.037 4.037 17 N -0.938 5.938 18 Si 1.123 2.877 19 H -0.268 1.268 20 H -0.270 1.270 21 H -0.284 1.284 22 H 0.020 0.980 23 H 0.087 0.913 24 H 0.057 0.943 25 H 0.090 0.910 26 H 0.028 0.972 27 H 0.071 0.929 28 H 0.085 0.915 29 H 0.071 0.929 30 H 0.055 0.945 31 H 0.074 0.926 32 H 0.043 0.957 33 H 0.038 0.962 34 H 0.068 0.932 35 H 0.052 0.948 36 H 0.030 0.970 37 H 0.063 0.937 38 H 0.015 0.985 39 H 0.331 0.669 40 H -0.006 1.006 41 H -0.049 1.049 42 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.676 18.043 -5.422 19.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.268 5.268 3 C -0.072 4.072 4 C -0.151 4.151 5 C -0.146 4.146 6 C -0.045 4.045 7 C -0.194 4.194 8 C -0.182 4.182 9 C 0.004 3.996 10 H 0.045 0.955 11 C -0.067 4.067 12 N -0.289 5.289 13 C 0.069 3.931 14 C -0.644 4.644 15 H 0.076 0.924 16 C -0.235 4.235 17 N -0.575 5.575 18 Si 0.944 3.056 19 H -0.193 1.193 20 H -0.195 1.195 21 H -0.210 1.210 22 H 0.039 0.961 23 H 0.106 0.894 24 H 0.076 0.924 25 H 0.108 0.892 26 H 0.046 0.954 27 H 0.090 0.910 28 H 0.103 0.897 29 H 0.090 0.910 30 H 0.073 0.927 31 H 0.092 0.908 32 H 0.062 0.938 33 H 0.057 0.943 34 H 0.087 0.913 35 H 0.071 0.929 36 H 0.049 0.951 37 H 0.082 0.918 38 H 0.034 0.966 39 H 0.148 0.852 40 H 0.012 0.988 41 H -0.032 1.032 42 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 5.358 16.236 -5.305 17.901 hybrid contribution -1.574 1.586 -0.084 2.236 sum 3.784 17.822 -5.389 18.999 Atomic orbital electron populations 1.22423 0.87313 1.02309 1.00506 1.61858 1.07700 1.14348 1.42881 1.22186 0.96328 0.87919 1.00727 1.21633 0.93778 1.00719 0.99002 1.21673 1.00284 0.94063 0.98614 1.20401 0.92318 0.95700 0.96042 1.21994 0.98492 1.02739 0.96222 1.21747 1.00175 0.99117 0.97161 1.21426 0.95386 0.91861 0.90880 0.95502 1.22085 0.96140 0.94612 0.93846 1.60749 1.62140 1.02436 1.03591 1.19334 0.90305 0.87144 0.96337 1.22334 1.37417 0.99811 1.04842 0.92403 1.27456 0.93845 0.96144 1.06028 1.70924 1.37119 1.40108 1.09372 0.82855 0.76822 0.74961 0.70969 1.19332 1.19488 1.20993 0.96139 0.89436 0.92436 0.89191 0.95352 0.90999 0.89653 0.91039 0.92652 0.90757 0.93835 0.94331 0.91314 0.92895 0.95064 0.91834 0.96650 0.85234 0.98780 1.03199 0.93842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.53 8.89 127.69 1.14 1.67 16 2 N -0.54 -13.75 4.03 -897.19 -3.62 -17.37 16 3 C 0.06 1.11 5.46 86.33 0.47 1.58 16 4 C -0.11 -2.09 5.74 30.65 0.18 -1.91 16 5 C -0.11 -2.40 4.78 30.67 0.15 -2.25 16 6 C -0.04 -1.24 0.54 -52.13 -0.03 -1.27 16 7 C -0.14 -4.43 7.26 71.98 0.52 -3.91 16 8 C -0.12 -3.56 7.67 71.98 0.55 -3.01 16 9 C 0.11 3.38 1.40 44.94 0.06 3.44 16 10 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 11 C 0.06 2.31 4.60 86.30 0.40 2.71 16 12 N -0.66 -28.38 3.00 -517.96 -1.55 -29.93 16 13 C 0.20 10.60 4.75 85.55 0.41 11.01 16 14 C -0.61 -34.99 9.32 25.60 0.24 -34.75 16 15 H 0.06 3.26 7.81 -2.91 -0.02 3.24 16 16 C -0.04 -2.19 5.46 84.65 0.46 -1.73 16 17 N -0.94 -58.94 13.65 21.45 0.29 -58.65 16 18 Si 1.12 50.72 29.90 68.60 2.05 52.77 16 19 H -0.27 -11.16 7.11 99.48 0.71 -10.46 16 20 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 21 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 22 H 0.02 0.48 8.12 -2.39 -0.02 0.46 16 23 H 0.09 1.63 7.97 -2.39 -0.02 1.61 16 24 H 0.06 1.52 6.47 -2.39 -0.02 1.51 16 25 H 0.09 1.47 8.01 -2.39 -0.02 1.45 16 26 H 0.03 0.58 8.14 -2.39 -0.02 0.56 16 27 H 0.07 1.37 6.58 -2.39 -0.02 1.36 16 28 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 29 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.07 2.98 5.86 -2.39 -0.01 2.96 16 32 H 0.04 1.27 8.13 -2.39 -0.02 1.26 16 33 H 0.04 1.24 8.13 -2.39 -0.02 1.22 16 34 H 0.07 1.83 6.01 -2.39 -0.01 1.81 16 35 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 36 H 0.03 1.05 6.26 -2.39 -0.01 1.03 16 37 H 0.06 2.52 6.05 -2.39 -0.01 2.50 16 38 H 0.02 0.58 6.06 -2.39 -0.01 0.57 16 39 H 0.33 13.89 8.76 -89.69 -0.79 13.11 16 40 H -0.01 -0.34 8.01 -2.39 -0.02 -0.36 16 41 H -0.05 -2.85 8.01 -2.39 -0.02 -2.87 16 42 H 0.25 16.16 7.22 -92.71 -0.67 15.49 16 Total: -1.00 -63.93 310.05 2.01 -61.93 By element: Atomic # 1 Polarization: 19.39 SS G_CDS: 0.29 Total: 19.67 kcal Atomic # 6 Polarization: -32.97 SS G_CDS: 4.54 Total: -28.42 kcal Atomic # 7 Polarization: -101.07 SS G_CDS: -4.88 Total: -105.95 kcal Atomic # 14 Polarization: 50.72 SS G_CDS: 2.05 Total: 52.77 kcal Total: -63.93 2.01 -61.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000582841572.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.327 kcal (2) G-P(sol) polarization free energy of solvation -63.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds