Wall clock time and date at job start Mon Mar 30 2020 17:52:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46498 * 120.00276 * 2 1 4 4 C 1.53004 * 109.47369 * 270.00171 * 3 2 1 5 5 N 1.46898 * 109.46850 * 180.02562 * 4 3 2 6 6 C 1.46845 * 111.00565 * 45.79157 * 5 4 3 7 7 C 1.53034 * 109.52676 * 185.84030 * 6 5 4 8 8 C 1.53126 * 109.27454 * 300.81918 * 7 6 5 9 9 C 1.53119 * 109.16048 * 57.65518 * 8 7 6 10 10 C 1.46850 * 110.99813 * 170.00223 * 5 4 3 11 11 C 1.34783 * 119.99966 * 180.02562 * 2 1 3 12 12 O 1.21691 * 119.99933 * 179.97438 * 11 2 1 13 13 C 1.46376 * 119.99845 * 359.97438 * 11 2 1 14 14 H 1.08002 * 120.00098 * 0.02562 * 13 11 2 15 15 C 1.40044 * 119.99878 * 180.02562 * 13 11 2 16 16 N 1.30676 * 120.00291 * 359.97438 * 15 13 11 17 17 Si 1.86801 * 120.00041 * 180.02562 * 15 13 11 18 18 H 1.48504 * 109.47033 * 59.99911 * 17 15 13 19 19 H 1.48492 * 109.47230 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.47120 * 299.99979 * 17 15 13 21 21 H 1.09002 * 109.46768 * 89.99383 * 1 2 3 22 22 H 1.09001 * 109.47143 * 209.99784 * 1 2 3 23 23 H 1.08997 * 109.46660 * 329.99840 * 1 2 3 24 24 H 1.09006 * 109.47054 * 150.00122 * 3 2 1 25 25 H 1.08999 * 109.46804 * 30.00530 * 3 2 1 26 26 H 1.08995 * 109.46637 * 59.99753 * 4 3 2 27 27 H 1.09001 * 109.46762 * 299.99710 * 4 3 2 28 28 H 1.08995 * 109.46315 * 65.81881 * 6 5 4 29 29 H 1.09005 * 109.45975 * 305.85394 * 6 5 4 30 30 H 1.08997 * 109.50792 * 180.88024 * 7 6 5 31 31 H 1.09006 * 109.50471 * 60.75677 * 7 6 5 32 32 H 1.08999 * 109.52028 * 177.55723 * 8 7 6 33 33 H 1.08993 * 109.52259 * 297.74866 * 8 7 6 34 34 H 1.09004 * 109.50440 * 62.28501 * 9 8 7 35 35 H 1.09003 * 109.50154 * 182.40625 * 9 8 7 36 36 H 1.09005 * 109.46186 * 54.13967 * 10 5 4 37 37 H 1.08998 * 109.46012 * 294.17361 * 10 5 4 38 38 H 0.96993 * 119.99861 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4526 1.7104 -1.4425 5 7 3.1877 2.9822 -1.4424 6 6 4.3019 2.9461 -0.4866 7 6 4.9525 4.3290 -0.4069 8 6 5.4591 4.7300 -1.7952 9 6 4.2882 4.7130 -2.7818 10 6 3.6569 3.3190 -2.7925 11 6 2.1389 -1.1673 -0.0005 12 8 3.3558 -1.1673 -0.0010 13 6 1.4070 -2.4349 -0.0005 14 1 0.3270 -2.4349 -0.0005 15 6 2.1072 -3.6477 -0.0005 16 7 3.4139 -3.6478 -0.0010 17 14 1.1732 -5.2655 -0.0012 18 1 0.3199 -5.3438 -1.2141 19 1 2.1381 -6.3941 -0.0018 20 1 0.3190 -5.3444 1.2109 21 1 -0.3633 0.0001 -1.0277 22 1 -0.3633 -0.8900 0.5138 23 1 -0.3632 0.8900 0.5139 24 1 3.1500 1.1383 0.5138 25 1 1.6085 2.0283 0.5139 26 1 1.5002 1.8408 -1.9562 27 1 3.0417 0.9507 -1.9563 28 1 5.0404 2.2158 -0.8172 29 1 3.9274 2.6637 0.4973 30 1 5.7893 4.2979 0.2908 31 1 4.2181 5.0574 -0.0631 32 1 5.8845 5.7326 -1.7521 33 1 6.2217 4.0235 -2.1228 34 1 3.5434 5.4474 -2.4753 35 1 4.6505 4.9561 -3.7807 36 1 2.8139 3.3074 -3.4834 37 1 4.3984 2.5869 -3.1123 38 1 3.8988 -4.4878 -0.0014 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593882776.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:52:55 Heat of formation + Delta-G solvation = -39.186067 kcal Electronic energy + Delta-G solvation = -17755.411547 eV Core-core repulsion = 15018.491053 eV Total energy + Delta-G solvation = -2736.920493 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.96627 -37.50944 -34.41318 -33.01039 -32.43687 -30.78156 -28.68721 -26.10658 -25.38032 -23.87617 -22.83660 -21.23591 -19.55743 -18.89059 -16.49758 -16.01679 -15.57155 -14.82224 -14.56599 -14.35541 -14.15020 -13.95548 -13.65134 -13.12788 -12.82405 -12.53054 -12.20159 -11.88896 -11.55977 -11.43023 -11.22692 -11.14050 -11.06939 -10.90867 -10.74417 -10.46050 -10.27816 -10.23524 -10.14092 -9.93554 -8.84963 -8.01816 -7.58652 -7.21535 -6.19544 -4.65009 3.14961 3.19950 3.21641 4.01244 4.16658 4.55928 4.74366 4.91410 4.95429 5.02930 5.33607 5.52476 5.61149 5.66360 5.66674 5.73441 5.83618 5.89323 5.97826 6.01360 6.03080 6.09979 6.15513 6.19449 6.31679 6.38097 6.43845 6.53884 6.56714 6.70659 7.32710 7.39376 7.44208 7.67016 8.14817 8.36096 9.01821 9.42883 10.57508 10.76268 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.042216 B = 0.005209 C = 0.004987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 663.096799 B = 5373.506033 C = 5613.547267 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.649 5.649 3 C 0.127 3.873 4 C 0.043 3.957 5 N -0.536 5.536 6 C 0.047 3.953 7 C -0.116 4.116 8 C -0.122 4.122 9 C -0.114 4.114 10 C 0.054 3.946 11 C 0.556 3.444 12 O -0.578 6.578 13 C -0.544 4.544 14 H 0.072 0.928 15 C 0.087 3.913 16 N -0.768 5.768 17 Si 0.907 3.093 18 H -0.268 1.268 19 H -0.281 1.281 20 H -0.267 1.267 21 H 0.029 0.971 22 H 0.071 0.929 23 H 0.041 0.959 24 H 0.074 0.926 25 H 0.059 0.941 26 H 0.067 0.933 27 H 0.039 0.961 28 H 0.035 0.965 29 H 0.082 0.918 30 H 0.063 0.937 31 H 0.068 0.932 32 H 0.059 0.941 33 H 0.057 0.943 34 H 0.068 0.932 35 H 0.061 0.939 36 H 0.070 0.930 37 H 0.031 0.969 38 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.133 12.654 -2.816 13.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.387 5.387 3 C 0.002 3.998 4 C -0.086 4.086 5 N -0.262 5.262 6 C -0.081 4.081 7 C -0.153 4.153 8 C -0.159 4.159 9 C -0.152 4.152 10 C -0.074 4.074 11 C 0.362 3.638 12 O -0.460 6.460 13 C -0.581 4.581 14 H 0.090 0.910 15 C -0.132 4.132 16 N -0.397 5.397 17 Si 0.731 3.269 18 H -0.193 1.193 19 H -0.206 1.206 20 H -0.192 1.192 21 H 0.048 0.952 22 H 0.090 0.910 23 H 0.060 0.940 24 H 0.093 0.907 25 H 0.077 0.923 26 H 0.086 0.914 27 H 0.058 0.942 28 H 0.054 0.946 29 H 0.101 0.899 30 H 0.082 0.918 31 H 0.086 0.914 32 H 0.078 0.922 33 H 0.076 0.924 34 H 0.087 0.913 35 H 0.080 0.920 36 H 0.089 0.911 37 H 0.050 0.950 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.609 12.893 -2.656 13.178 hybrid contribution -0.048 -1.462 -0.405 1.518 sum -0.657 11.431 -3.061 11.852 Atomic orbital electron populations 1.21398 0.82143 1.01062 0.99545 1.47981 1.05231 1.05345 1.80167 1.21127 0.97929 0.86359 0.94398 1.22551 0.97731 0.88666 0.99651 1.62041 1.24918 1.32571 1.06650 1.22197 0.92286 0.96179 0.97404 1.21596 0.99787 0.97296 0.96668 1.21584 0.97693 1.00915 0.95746 1.21565 0.97675 0.97172 0.98785 1.22059 0.98557 0.96103 0.90669 1.18262 0.86987 0.82293 0.76299 1.90589 1.14029 1.86329 1.55096 1.20989 0.93701 0.89284 1.54082 0.90988 1.25740 0.94605 1.00310 0.92589 1.70013 1.07086 1.27356 1.35232 0.86452 0.79858 0.81090 0.79478 1.19264 1.20566 1.19223 0.95205 0.91037 0.94000 0.90731 0.92305 0.91420 0.94228 0.94620 0.89941 0.91822 0.91358 0.92205 0.92373 0.91299 0.91995 0.91141 0.95047 0.92084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.94 10.19 59.85 0.61 2.55 16 2 N -0.65 -15.06 2.87 -183.24 -0.53 -15.58 16 3 C 0.13 2.55 4.70 -4.04 -0.02 2.53 16 4 C 0.04 0.80 5.60 -3.82 -0.02 0.78 16 5 N -0.54 -8.58 4.81 -234.67 -1.13 -9.70 16 6 C 0.05 0.74 4.85 -3.84 -0.02 0.72 16 7 C -0.12 -1.43 6.09 -26.65 -0.16 -1.59 16 8 C -0.12 -1.37 6.00 -26.60 -0.16 -1.53 16 9 C -0.11 -1.30 6.09 -26.65 -0.16 -1.46 16 10 C 0.05 0.77 5.42 -3.83 -0.02 0.74 16 11 C 0.56 15.97 7.61 -12.98 -0.10 15.87 16 12 O -0.58 -18.73 14.60 5.20 0.08 -18.65 16 13 C -0.54 -15.37 8.74 -35.63 -0.31 -15.68 16 14 H 0.07 1.85 6.00 -52.49 -0.31 1.54 16 15 C 0.09 2.44 5.50 -17.37 -0.10 2.35 16 16 N -0.77 -23.11 11.83 55.55 0.66 -22.45 16 17 Si 0.91 20.13 29.56 -169.99 -5.02 15.10 16 18 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 19 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 20 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 21 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 22 H 0.07 1.38 6.09 -51.93 -0.32 1.06 16 23 H 0.04 0.66 7.89 -51.93 -0.41 0.25 16 24 H 0.07 1.66 5.48 -51.93 -0.28 1.37 16 25 H 0.06 1.04 7.89 -51.93 -0.41 0.63 16 26 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 27 H 0.04 0.87 8.08 -51.93 -0.42 0.45 16 28 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 29 H 0.08 1.34 5.81 -51.93 -0.30 1.03 16 30 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 35 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.07 0.94 8.12 -51.93 -0.42 0.51 16 37 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 38 H 0.27 7.35 8.29 -40.82 -0.34 7.01 16 LS Contribution 300.87 15.07 4.53 4.53 Total: -1.00 -33.14 300.87 -8.11 -41.25 By element: Atomic # 1 Polarization: 6.46 SS G_CDS: -6.24 Total: 0.22 kcal Atomic # 6 Polarization: 5.74 SS G_CDS: -0.46 Total: 5.28 kcal Atomic # 7 Polarization: -46.74 SS G_CDS: -1.00 Total: -47.74 kcal Atomic # 8 Polarization: -18.73 SS G_CDS: 0.08 Total: -18.65 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -5.02 Total: 15.10 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -33.14 -8.11 -41.25 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593882776.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.067 kcal (2) G-P(sol) polarization free energy of solvation -33.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds