Wall clock time and date at job start Mon Mar 30 2020 17:53:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.49953 * 2 1 4 4 C 1.53115 * 109.50425 * 239.92275 * 2 1 3 5 5 C 1.53124 * 109.16020 * 182.36483 * 4 2 1 6 6 H 1.09005 * 109.50012 * 177.59205 * 5 4 2 7 7 C 1.52998 * 109.50094 * 297.70887 * 5 4 2 8 8 C 1.53035 * 109.27704 * 57.65387 * 5 4 2 9 9 N 1.46850 * 109.52274 * 300.81608 * 8 5 4 10 10 C 1.46895 * 110.99924 * 185.84029 * 9 8 5 11 11 C 1.53003 * 109.47203 * 170.00191 * 10 9 8 12 12 N 1.46494 * 109.47361 * 180.02562 * 11 10 9 13 13 C 1.46502 * 120.00036 * 89.99895 * 12 11 10 14 14 C 1.36938 * 120.00139 * 270.00243 * 12 11 10 15 15 H 1.08003 * 119.99653 * 334.60847 * 14 12 11 16 16 C 1.38818 * 120.00009 * 154.60921 * 14 12 11 17 17 N 1.31618 * 119.99903 * 3.91697 * 16 14 12 18 18 Si 1.86800 * 119.99547 * 183.91431 * 16 14 12 19 19 H 1.48493 * 109.47192 * 60.00281 * 18 16 14 20 20 H 1.48503 * 109.46739 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.47316 * 299.99485 * 18 16 14 22 22 C 1.46846 * 111.19413 * 61.74752 * 9 8 5 23 23 H 1.09003 * 109.46969 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.47141 * 300.07691 * 1 2 3 25 25 H 1.08998 * 109.47192 * 60.07851 * 1 2 3 26 26 H 1.08996 * 109.52542 * 62.45536 * 4 2 1 27 27 H 1.09001 * 109.57550 * 302.29460 * 4 2 1 28 28 H 1.08999 * 109.46863 * 179.80241 * 7 5 4 29 29 H 1.08996 * 109.47231 * 299.80629 * 7 5 4 30 30 H 1.09000 * 109.47161 * 59.80656 * 7 5 4 31 31 H 1.09005 * 109.46189 * 180.80431 * 8 5 4 32 32 H 1.08996 * 109.46553 * 60.83806 * 8 5 4 33 33 H 1.09009 * 109.47360 * 50.00536 * 10 9 8 34 34 H 1.09000 * 109.47601 * 290.00155 * 10 9 8 35 35 H 1.09000 * 109.46690 * 60.00530 * 11 10 9 36 36 H 1.09000 * 109.46812 * 300.00447 * 11 10 9 37 37 H 1.08991 * 109.47508 * 264.47039 * 13 12 11 38 38 H 1.08999 * 109.47105 * 144.46591 * 13 12 11 39 39 H 1.08999 * 109.46759 * 24.47173 * 13 12 11 40 40 H 0.96996 * 119.99876 * 180.02562 * 17 16 14 41 41 H 1.08999 * 109.46102 * 58.27374 * 22 9 8 42 42 H 1.09003 * 109.46099 * 178.24309 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0412 -0.7233 -1.2490 5 6 3.5713 -0.7706 -1.2114 6 1 3.9396 -1.3218 -2.0767 7 6 4.1271 0.6546 -1.2383 8 6 4.0238 -1.4715 0.0715 9 7 3.5101 -0.7410 1.2372 10 6 4.0388 -1.3046 2.4865 11 6 3.6890 -0.3776 3.6524 12 7 4.2167 -0.9393 4.8982 13 6 5.5672 -0.5892 5.3454 14 6 3.4478 -1.7917 5.6447 15 1 2.3708 -1.7453 5.5789 16 6 4.0526 -2.7155 6.4861 17 7 5.3614 -2.7209 6.6251 18 14 3.0089 -3.9507 7.4212 19 1 2.2492 -4.7868 6.4574 20 1 3.8883 -4.8189 8.2447 21 1 2.0596 -3.2279 8.3053 22 6 2.0418 -0.7232 1.2478 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5150 0.8893 25 1 -0.3633 0.5126 -0.8907 26 1 1.7150 -0.1867 -2.1398 27 1 1.6459 -1.7389 -1.2703 28 1 5.2161 0.6205 -1.2080 29 1 3.8044 1.1533 -2.1522 30 1 3.7567 1.2054 -0.3736 31 1 5.1130 -1.4941 0.1082 32 1 3.6390 -2.4912 0.0833 33 1 5.1220 -1.4014 2.4117 34 1 3.5972 -2.2863 2.6578 35 1 2.6059 -0.2809 3.7272 36 1 4.1306 0.6041 3.4811 37 1 6.2689 -1.3557 5.0170 38 1 5.5840 -0.5232 6.4333 39 1 5.8533 0.3722 4.9187 40 1 5.7841 -3.3666 7.2127 41 1 1.6663 -1.7465 1.2542 42 1 1.6913 -0.2023 2.1389 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595306125.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:53:01 Heat of formation + Delta-G solvation = 10.118726 kcal Electronic energy + Delta-G solvation = -18281.989342 eV Core-core repulsion = 15683.039959 eV Total energy + Delta-G solvation = -2598.949383 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.35818 -35.87380 -33.97140 -33.03138 -31.13707 -27.88668 -26.61386 -26.54706 -25.79882 -24.09564 -21.79575 -21.22983 -19.91672 -18.55480 -16.70747 -15.69764 -15.07118 -14.82286 -14.48333 -14.14073 -13.90372 -13.60917 -13.41291 -12.88224 -12.63536 -12.29611 -12.21413 -11.89467 -11.71168 -11.49673 -11.31352 -11.05288 -10.86212 -10.81549 -10.63297 -10.44041 -10.37660 -10.16927 -10.03066 -9.97177 -9.84316 -9.58320 -8.46286 -7.83913 -6.67548 -5.69120 -3.15248 3.39976 3.45117 3.45912 4.25836 4.55004 4.78177 4.87805 4.97580 5.17305 5.35776 5.46801 5.52796 5.65239 5.69127 5.72011 5.75662 5.79915 5.84626 5.94004 5.96303 6.01393 6.06434 6.12604 6.20268 6.25302 6.34828 6.38368 6.45319 6.57271 6.63156 6.82851 6.89598 6.99348 7.53680 7.56654 7.61776 7.81426 7.90698 8.48319 9.31396 9.93620 10.43769 11.35639 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.030601 B = 0.005730 C = 0.005279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.791732 B = 4885.018464 C = 5302.278135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.091 4.091 3 H 0.080 0.920 4 C -0.109 4.109 5 C -0.089 4.089 6 H 0.065 0.935 7 C -0.137 4.137 8 C 0.060 3.940 9 N -0.535 5.535 10 C 0.038 3.962 11 C 0.160 3.840 12 N -0.606 5.606 13 C 0.168 3.832 14 C -0.253 4.253 15 H 0.066 0.934 16 C 0.004 3.996 17 N -0.910 5.910 18 Si 0.902 3.098 19 H -0.284 1.284 20 H -0.290 1.290 21 H -0.284 1.284 22 C 0.059 3.941 23 H 0.051 0.949 24 H 0.056 0.944 25 H 0.052 0.948 26 H 0.058 0.942 27 H 0.055 0.945 28 H 0.048 0.952 29 H 0.041 0.959 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.026 0.974 33 H 0.064 0.936 34 H 0.032 0.968 35 H 0.040 0.960 36 H 0.043 0.957 37 H 0.023 0.977 38 H 0.051 0.949 39 H -0.008 1.008 40 H 0.252 0.748 41 H 0.027 0.973 42 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.181 4.985 -15.013 16.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.110 4.110 3 H 0.098 0.902 4 C -0.147 4.147 5 C -0.107 4.107 6 H 0.084 0.916 7 C -0.195 4.195 8 C -0.069 4.069 9 N -0.260 5.260 10 C -0.092 4.092 11 C 0.032 3.968 12 N -0.329 5.329 13 C 0.023 3.977 14 C -0.382 4.382 15 H 0.084 0.916 16 C -0.194 4.194 17 N -0.556 5.556 18 Si 0.732 3.268 19 H -0.211 1.211 20 H -0.216 1.216 21 H -0.210 1.210 22 C -0.069 4.069 23 H 0.070 0.930 24 H 0.075 0.925 25 H 0.071 0.929 26 H 0.077 0.923 27 H 0.074 0.926 28 H 0.067 0.933 29 H 0.061 0.939 30 H 0.091 0.909 31 H 0.088 0.912 32 H 0.044 0.956 33 H 0.082 0.918 34 H 0.050 0.950 35 H 0.059 0.941 36 H 0.061 0.939 37 H 0.041 0.959 38 H 0.070 0.930 39 H 0.011 0.989 40 H 0.063 0.937 41 H 0.045 0.955 42 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -4.882 5.366 -14.888 16.561 hybrid contribution -0.709 -1.853 0.544 2.057 sum -5.591 3.513 -14.343 15.790 Atomic orbital electron populations 1.21797 0.95471 1.01597 1.01520 1.21213 0.94637 1.00532 0.94569 0.90217 1.21660 0.95257 1.00140 0.97633 1.21159 0.95343 0.97357 0.96875 0.91643 1.21737 1.00327 0.95924 1.01484 1.22074 0.99733 0.94556 0.90506 1.61992 1.07291 1.54100 1.02589 1.22944 0.99432 0.98172 0.88684 1.20778 0.97023 0.94231 0.84742 1.43948 1.15003 1.54038 1.19943 1.20855 0.85143 0.92927 0.98762 1.19164 0.89712 1.09965 1.19397 0.91610 1.25161 0.95586 0.97960 1.00652 1.70078 1.07814 1.37220 1.40458 0.86373 0.79380 0.81648 0.79402 1.21099 1.21582 1.20995 1.22151 0.88135 0.98620 0.97966 0.92989 0.92512 0.92886 0.92293 0.92592 0.93256 0.93946 0.90946 0.91167 0.95576 0.91771 0.94971 0.94132 0.93894 0.95904 0.93016 0.98948 0.93740 0.95456 0.90321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 9.20 37.16 0.34 -1.17 16 2 C -0.09 -1.09 2.53 -90.54 -0.23 -1.31 16 3 H 0.08 0.98 6.58 -51.93 -0.34 0.64 16 4 C -0.11 -1.22 4.79 -26.61 -0.13 -1.34 16 5 C -0.09 -1.04 3.21 -90.54 -0.29 -1.33 16 6 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 7 C -0.14 -1.57 8.75 37.16 0.33 -1.24 16 8 C 0.06 0.86 4.90 -3.83 -0.02 0.84 16 9 N -0.53 -8.62 3.94 -234.67 -0.92 -9.54 16 10 C 0.04 0.74 5.28 -3.82 -0.02 0.72 16 11 C 0.16 3.44 5.64 -4.04 -0.02 3.42 16 12 N -0.61 -15.78 2.93 -181.12 -0.53 -16.32 16 13 C 0.17 4.31 8.99 59.85 0.54 4.85 16 14 C -0.25 -7.10 9.67 -15.06 -0.15 -7.25 16 15 H 0.07 1.81 7.83 -52.48 -0.41 1.40 16 16 C 0.00 0.12 5.38 -17.43 -0.09 0.03 16 17 N -0.91 -26.92 10.13 55.49 0.56 -26.36 16 18 Si 0.90 22.17 29.56 -169.99 -5.02 17.14 16 19 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 20 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 21 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 22 C 0.06 0.88 4.58 -3.83 -0.02 0.87 16 23 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 24 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.93 6.01 -51.93 -0.31 0.61 16 31 H 0.07 1.01 8.02 -51.93 -0.42 0.60 16 32 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.06 1.33 7.99 -51.92 -0.41 0.92 16 34 H 0.03 0.71 8.12 -51.93 -0.42 0.29 16 35 H 0.04 0.86 6.32 -51.93 -0.33 0.53 16 36 H 0.04 0.88 7.86 -51.93 -0.41 0.48 16 37 H 0.02 0.62 7.43 -51.93 -0.39 0.24 16 38 H 0.05 1.43 7.04 -51.93 -0.37 1.06 16 39 H -0.01 -0.18 7.83 -51.93 -0.41 -0.59 16 40 H 0.25 7.24 8.31 -40.82 -0.34 6.91 16 41 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.08 1.23 6.21 -51.93 -0.32 0.91 16 LS Contribution 317.76 15.07 4.79 4.79 Total: -1.00 -29.09 317.76 -8.79 -37.87 By element: Atomic # 1 Polarization: 3.24 SS G_CDS: -7.90 Total: -4.66 kcal Atomic # 6 Polarization: -3.17 SS G_CDS: 0.24 Total: -2.93 kcal Atomic # 7 Polarization: -51.32 SS G_CDS: -0.89 Total: -52.22 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -29.09 -8.79 -37.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595306125.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.994 kcal (2) G-P(sol) polarization free energy of solvation -29.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.875 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds