Wall clock time and date at job start Mon Mar 30 2020 17:53:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46903 * 111.00011 * 2 1 4 4 C 1.52998 * 112.84853 * 61.97711 * 3 2 1 5 5 N 1.46498 * 109.47507 * 48.62820 * 4 3 2 6 6 C 1.34772 * 120.00314 * 175.57524 * 5 4 3 7 7 O 1.21279 * 120.00027 * 0.02562 * 6 5 4 8 8 C 1.50703 * 120.00102 * 180.02562 * 6 5 4 9 9 C 1.53001 * 109.47110 * 180.02562 * 8 6 5 10 10 C 1.50692 * 109.47120 * 180.02562 * 9 8 6 11 11 H 1.08003 * 119.99862 * 359.97438 * 10 9 8 12 12 C 1.37876 * 120.00078 * 180.02562 * 10 9 8 13 13 N 1.31516 * 119.99927 * 0.02562 * 12 10 9 14 14 Si 1.86805 * 120.00125 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.47009 * 90.00143 * 14 12 10 16 16 H 1.48502 * 109.47250 * 210.00147 * 14 12 10 17 17 H 1.48494 * 109.46923 * 330.00082 * 14 12 10 18 18 C 1.53781 * 113.68872 * 193.24371 * 3 2 1 19 19 C 1.53785 * 87.07953 * 89.12831 * 18 3 2 20 20 C 1.53783 * 87.08357 * 25.43016 * 19 18 3 21 21 H 1.08994 * 109.47371 * 175.36473 * 1 2 3 22 22 H 1.09003 * 109.47145 * 295.35987 * 1 2 3 23 23 H 1.08999 * 109.47635 * 55.36305 * 1 2 3 24 24 H 1.00899 * 110.99422 * 236.04932 * 2 1 3 25 25 H 1.09005 * 109.47077 * 288.63199 * 4 3 2 26 26 H 1.08998 * 109.47065 * 168.63364 * 4 3 2 27 27 H 0.97000 * 119.99696 * 355.85795 * 5 4 3 28 28 H 1.08996 * 109.47324 * 300.00288 * 8 6 5 29 29 H 1.09001 * 109.46608 * 60.00235 * 8 6 5 30 30 H 1.08996 * 109.47069 * 300.00208 * 9 8 6 31 31 H 1.09001 * 109.46689 * 60.00202 * 9 8 6 32 32 H 0.97001 * 119.99845 * 180.02562 * 13 12 10 33 33 H 1.09000 * 113.60866 * 203.67404 * 18 3 2 34 34 H 1.08996 * 113.61403 * 334.57906 * 18 3 2 35 35 H 1.09003 * 113.61491 * 270.88062 * 19 18 3 36 36 H 1.08998 * 113.61265 * 139.97922 * 19 18 3 37 37 H 1.08993 * 113.61441 * 220.01705 * 20 19 18 38 38 H 1.09004 * 113.61152 * 89.11266 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.5899 2.1635 1.2446 5 7 1.8577 1.3627 2.4418 6 6 1.6614 1.8931 3.6651 7 8 1.2626 3.0332 3.7749 8 6 1.9374 1.0695 4.8967 9 6 1.6351 1.9013 6.1448 10 6 1.9117 1.0780 7.3762 11 1 2.2672 0.0628 7.2784 12 6 1.7100 1.6203 8.6277 13 7 1.2757 2.8559 8.7467 14 14 2.0522 0.5994 10.1543 15 1 3.4644 0.7911 10.5715 16 1 1.1490 1.0311 11.2511 17 1 1.8152 -0.8353 9.8536 18 6 3.4966 1.4570 -0.3226 19 6 3.0925 1.5555 -1.8032 20 6 1.7495 2.1257 -1.3174 21 1 -0.3634 -1.0242 -0.0830 22 1 -0.3633 0.4402 0.9287 23 1 -0.3634 0.5841 -0.8455 24 1 1.8305 -0.5261 -0.7814 25 1 0.5267 2.3986 1.1952 26 1 2.1649 3.0884 1.2900 27 1 2.1802 0.4521 2.3541 28 1 1.3046 0.1822 4.8898 29 1 2.9851 0.7686 4.9051 30 1 2.2677 2.7889 6.1519 31 1 0.5874 2.2018 6.1360 32 1 1.1341 3.2376 9.6272 33 1 3.9747 2.3586 0.0604 34 1 4.0478 0.5486 -0.0799 35 1 3.0031 0.5877 -2.2967 36 1 3.6893 2.2683 -2.3721 37 1 0.8904 1.7570 -1.8778 38 1 1.7501 3.2100 -1.2063 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600826135.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:53:14 Heat of formation + Delta-G solvation = -29.916835 kcal Electronic energy + Delta-G solvation = -17239.103472 eV Core-core repulsion = 14502.584922 eV Total energy + Delta-G solvation = -2736.518549 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.33178 -38.62723 -34.20213 -33.50408 -33.33575 -30.94122 -28.11771 -26.30858 -25.57702 -24.92433 -22.55507 -21.20349 -19.67250 -18.80905 -16.85765 -16.30540 -16.24582 -15.47972 -15.20132 -14.89905 -14.36755 -14.16806 -13.86683 -13.68781 -13.17470 -12.72295 -12.56536 -12.14681 -12.03573 -11.93170 -11.59368 -11.08641 -11.06394 -10.90324 -10.87874 -10.55166 -10.42018 -9.87046 -9.58062 -9.09301 -8.93435 -8.70270 -8.56649 -8.26055 -5.90623 -3.94599 3.37085 3.40733 3.42782 3.45714 3.57538 3.97595 4.26097 4.36229 4.51863 4.53470 4.56154 5.11863 5.18689 5.23608 5.41946 5.44191 5.47437 5.56520 5.60084 5.62695 5.76031 5.79707 5.91615 5.94197 5.99399 6.34552 6.37017 6.70344 6.93786 7.01208 7.09765 7.81040 7.94483 8.13075 8.14691 8.46014 8.94686 9.14830 9.68575 11.20414 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.048645 B = 0.004089 C = 0.004031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 575.458918 B = 6845.159786 C = 6944.162341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.665 5.665 3 C 0.081 3.919 4 C 0.143 3.857 5 N -0.731 5.731 6 C 0.506 3.494 7 O -0.543 6.543 8 C -0.129 4.129 9 C 0.037 3.963 10 C -0.525 4.525 11 H 0.056 0.944 12 C 0.057 3.943 13 N -0.891 5.891 14 Si 0.892 3.108 15 H -0.281 1.281 16 H -0.287 1.287 17 H -0.274 1.274 18 C -0.129 4.129 19 C -0.144 4.144 20 C -0.166 4.166 21 H 0.068 0.932 22 H 0.071 0.929 23 H 0.025 0.975 24 H 0.342 0.658 25 H 0.057 0.943 26 H 0.069 0.931 27 H 0.405 0.595 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.023 0.977 31 H 0.023 0.977 32 H 0.260 0.740 33 H 0.090 0.910 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.070 0.930 37 H 0.067 0.933 38 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.121 -5.797 -22.301 23.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.295 5.295 3 C -0.011 4.011 4 C 0.018 3.982 5 N -0.385 5.385 6 C 0.295 3.705 7 O -0.419 6.419 8 C -0.169 4.169 9 C -0.001 4.001 10 C -0.564 4.564 11 H 0.074 0.926 12 C -0.144 4.144 13 N -0.530 5.530 14 Si 0.720 3.280 15 H -0.207 1.207 16 H -0.213 1.213 17 H -0.199 1.199 18 C -0.167 4.167 19 C -0.181 4.181 20 C -0.206 4.206 21 H 0.087 0.913 22 H 0.090 0.910 23 H 0.043 0.957 24 H 0.161 0.839 25 H 0.075 0.925 26 H 0.087 0.913 27 H 0.240 0.760 28 H 0.096 0.904 29 H 0.096 0.904 30 H 0.041 0.959 31 H 0.041 0.959 32 H 0.070 0.930 33 H 0.109 0.891 34 H 0.095 0.905 35 H 0.096 0.904 36 H 0.089 0.911 37 H 0.086 0.914 38 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 1.805 -4.915 -21.384 22.015 hybrid contribution 0.070 -0.649 -0.195 0.681 sum 1.875 -5.563 -21.579 22.363 Atomic orbital electron populations 1.22228 0.87184 1.01681 1.01386 1.60255 1.08292 1.11561 1.49370 1.22381 0.96174 0.88880 0.93715 1.21106 1.00422 0.93648 0.83064 1.46027 1.69903 1.17778 1.04831 1.21552 0.76179 0.87997 0.84791 1.90654 1.45204 1.19121 1.86928 1.21831 1.02082 0.99630 0.93340 1.18889 0.98021 0.94604 0.88539 1.21249 1.44759 0.99303 0.91066 0.92612 1.25027 0.95317 0.94971 0.99100 1.70006 1.45764 1.13762 1.23420 0.86597 0.78061 0.80463 0.82860 1.20701 1.21268 1.19886 1.23086 0.94968 1.03237 0.95373 1.22841 0.97254 1.01135 0.96884 1.23591 0.97883 1.01466 0.97690 0.91338 0.90975 0.95695 0.83913 0.92467 0.91314 0.75982 0.90372 0.90395 0.95899 0.95897 0.93019 0.89132 0.90516 0.90405 0.91109 0.91423 0.89302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 10.23 60.06 0.61 0.83 16 2 N -0.66 -5.83 6.03 -106.35 -0.64 -6.47 16 3 C 0.08 0.76 0.79 -130.79 -0.10 0.66 16 4 C 0.14 1.88 4.51 -4.04 -0.02 1.86 16 5 N -0.73 -11.05 5.44 -60.29 -0.33 -11.38 16 6 C 0.51 10.25 7.83 -10.99 -0.09 10.17 16 7 O -0.54 -13.34 15.98 5.56 0.09 -13.25 16 8 C -0.13 -2.74 5.64 -27.88 -0.16 -2.90 16 9 C 0.04 1.03 4.26 -27.89 -0.12 0.91 16 10 C -0.53 -15.27 9.11 -34.44 -0.31 -15.59 16 11 H 0.06 1.53 7.74 -52.48 -0.41 1.12 16 12 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 13 N -0.89 -27.96 13.29 55.43 0.74 -27.22 16 14 Si 0.89 22.02 29.54 -169.99 -5.02 17.00 16 15 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 16 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 17 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 18 C -0.13 -1.09 7.36 -25.92 -0.19 -1.28 16 19 C -0.14 -1.00 7.74 -25.92 -0.20 -1.20 16 20 C -0.17 -1.33 7.15 -25.92 -0.19 -1.52 16 21 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 22 H 0.07 0.79 7.16 -51.93 -0.37 0.42 16 23 H 0.02 0.20 6.72 -51.93 -0.35 -0.15 16 24 H 0.34 2.44 7.97 -39.29 -0.31 2.12 16 25 H 0.06 0.81 7.48 -51.93 -0.39 0.42 16 26 H 0.07 0.97 7.94 -51.93 -0.41 0.56 16 27 H 0.41 5.37 7.96 -40.82 -0.32 5.05 16 28 H 0.08 1.54 8.14 -51.93 -0.42 1.11 16 29 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 30 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 31 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 32 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 33 H 0.09 0.82 7.96 -51.93 -0.41 0.40 16 34 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.08 0.47 7.71 -51.93 -0.40 0.07 16 36 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.07 0.52 6.88 -51.93 -0.36 0.16 16 38 H 0.09 0.73 8.10 -51.93 -0.42 0.31 16 LS Contribution 310.52 15.07 4.68 4.68 Total: -1.00 -33.78 310.52 -7.59 -41.37 By element: Atomic # 1 Polarization: 7.99 SS G_CDS: -6.25 Total: 1.74 kcal Atomic # 6 Polarization: -5.61 SS G_CDS: -0.86 Total: -6.46 kcal Atomic # 7 Polarization: -44.84 SS G_CDS: -0.23 Total: -45.07 kcal Atomic # 8 Polarization: -13.34 SS G_CDS: 0.09 Total: -13.25 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -33.78 -7.59 -41.37 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600826135.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.455 kcal (2) G-P(sol) polarization free energy of solvation -33.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds