Wall clock time and date at job start Mon Mar 30 2020 17:53:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46903 * 111.00011 * 2 1 4 4 C 1.52998 * 112.84853 * 61.97711 * 3 2 1 5 5 N 1.46498 * 109.47507 * 48.62820 * 4 3 2 6 6 C 1.34772 * 120.00314 * 175.57524 * 5 4 3 7 7 O 1.21279 * 120.00027 * 0.02562 * 6 5 4 8 8 C 1.50703 * 120.00102 * 180.02562 * 6 5 4 9 9 C 1.53001 * 109.47110 * 180.02562 * 8 6 5 10 10 C 1.50692 * 109.47120 * 180.02562 * 9 8 6 11 11 H 1.08003 * 119.99862 * 359.97438 * 10 9 8 12 12 C 1.37876 * 120.00078 * 180.02562 * 10 9 8 13 13 N 1.31516 * 119.99927 * 0.02562 * 12 10 9 14 14 Si 1.86805 * 120.00125 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.47009 * 90.00143 * 14 12 10 16 16 H 1.48502 * 109.47250 * 210.00147 * 14 12 10 17 17 H 1.48494 * 109.46923 * 330.00082 * 14 12 10 18 18 C 1.53781 * 113.68872 * 193.24371 * 3 2 1 19 19 C 1.53785 * 87.07953 * 89.12831 * 18 3 2 20 20 C 1.53783 * 87.08357 * 25.43016 * 19 18 3 21 21 H 1.08994 * 109.47371 * 175.36473 * 1 2 3 22 22 H 1.09003 * 109.47145 * 295.35987 * 1 2 3 23 23 H 1.08999 * 109.47635 * 55.36305 * 1 2 3 24 24 H 1.00899 * 110.99422 * 236.04932 * 2 1 3 25 25 H 1.09005 * 109.47077 * 288.63199 * 4 3 2 26 26 H 1.08998 * 109.47065 * 168.63364 * 4 3 2 27 27 H 0.97000 * 119.99696 * 355.85795 * 5 4 3 28 28 H 1.08996 * 109.47324 * 300.00288 * 8 6 5 29 29 H 1.09001 * 109.46608 * 60.00235 * 8 6 5 30 30 H 1.08996 * 109.47069 * 300.00208 * 9 8 6 31 31 H 1.09001 * 109.46689 * 60.00202 * 9 8 6 32 32 H 0.97001 * 119.99845 * 180.02562 * 13 12 10 33 33 H 1.09000 * 113.60866 * 203.67404 * 18 3 2 34 34 H 1.08996 * 113.61403 * 334.57906 * 18 3 2 35 35 H 1.09003 * 113.61491 * 270.88062 * 19 18 3 36 36 H 1.08998 * 113.61265 * 139.97922 * 19 18 3 37 37 H 1.08993 * 113.61441 * 220.01705 * 20 19 18 38 38 H 1.09004 * 113.61152 * 89.11266 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.5899 2.1635 1.2446 5 7 1.8577 1.3627 2.4418 6 6 1.6614 1.8931 3.6651 7 8 1.2626 3.0332 3.7749 8 6 1.9374 1.0695 4.8967 9 6 1.6351 1.9013 6.1448 10 6 1.9117 1.0780 7.3762 11 1 2.2672 0.0628 7.2784 12 6 1.7100 1.6203 8.6277 13 7 1.2757 2.8559 8.7467 14 14 2.0522 0.5994 10.1543 15 1 3.4644 0.7911 10.5715 16 1 1.1490 1.0311 11.2511 17 1 1.8152 -0.8353 9.8536 18 6 3.4966 1.4570 -0.3226 19 6 3.0925 1.5555 -1.8032 20 6 1.7495 2.1257 -1.3174 21 1 -0.3634 -1.0242 -0.0830 22 1 -0.3633 0.4402 0.9287 23 1 -0.3634 0.5841 -0.8455 24 1 1.8305 -0.5261 -0.7814 25 1 0.5267 2.3986 1.1952 26 1 2.1649 3.0884 1.2900 27 1 2.1802 0.4521 2.3541 28 1 1.3046 0.1822 4.8898 29 1 2.9851 0.7686 4.9051 30 1 2.2677 2.7889 6.1519 31 1 0.5874 2.2018 6.1360 32 1 1.1341 3.2376 9.6272 33 1 3.9747 2.3586 0.0604 34 1 4.0478 0.5486 -0.0799 35 1 3.0031 0.5877 -2.2967 36 1 3.6893 2.2683 -2.3721 37 1 0.8904 1.7570 -1.8778 38 1 1.7501 3.2100 -1.2063 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600826135.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:53:14 Heat of formation + Delta-G solvation = -55.266095 kcal Electronic energy + Delta-G solvation = -17240.202698 eV Core-core repulsion = 14502.584922 eV Total energy + Delta-G solvation = -2737.617776 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.25115 -40.11176 -35.63875 -35.34930 -34.34613 -32.98871 -29.43048 -27.34696 -26.97358 -25.83270 -23.88105 -22.70624 -21.19719 -19.72337 -18.75413 -17.54291 -17.19507 -17.01778 -16.47244 -16.43744 -16.16280 -15.10328 -14.75288 -14.72207 -14.52367 -14.17315 -14.06942 -13.60172 -13.21560 -13.19513 -12.80057 -12.66279 -12.49864 -12.43188 -11.90544 -11.68035 -11.64583 -11.58975 -11.29317 -11.19818 -10.68165 -10.55885 -9.97383 -9.42222 -8.16805 -6.31068 1.42897 1.46084 1.57098 1.75974 2.29964 2.46810 3.15980 3.16446 3.53425 3.60859 3.77110 3.90648 4.15457 4.38944 4.51341 4.52716 4.54058 4.57135 4.65147 4.69475 4.78933 4.83320 5.02719 5.09444 5.10411 5.13384 5.18539 5.33817 5.48710 5.56402 5.64510 5.86620 6.01676 6.19273 6.48343 6.72049 6.87371 7.38759 7.42036 8.96043 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.048645 B = 0.004089 C = 0.004031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 575.458918 B = 6845.159786 C = 6944.162341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.667 5.667 3 C 0.083 3.917 4 C 0.140 3.860 5 N -0.704 5.704 6 C 0.507 3.493 7 O -0.596 6.596 8 C -0.118 4.118 9 C 0.043 3.957 10 C -0.544 4.544 11 H 0.076 0.924 12 C -0.007 4.007 13 N -0.939 5.939 14 Si 0.976 3.024 15 H -0.271 1.271 16 H -0.286 1.286 17 H -0.255 1.255 18 C -0.130 4.130 19 C -0.130 4.130 20 C -0.164 4.164 21 H 0.083 0.917 22 H 0.045 0.955 23 H 0.033 0.967 24 H 0.357 0.643 25 H 0.045 0.955 26 H 0.058 0.942 27 H 0.418 0.582 28 H 0.101 0.899 29 H 0.102 0.898 30 H -0.018 1.018 31 H -0.019 1.019 32 H 0.263 0.737 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.094 0.906 36 H 0.078 0.922 37 H 0.075 0.925 38 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.144 -8.454 -23.484 25.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.299 5.299 3 C -0.010 4.010 4 C 0.015 3.985 5 N -0.357 5.357 6 C 0.295 3.705 7 O -0.477 6.477 8 C -0.158 4.158 9 C 0.005 3.995 10 C -0.581 4.581 11 H 0.094 0.906 12 C -0.205 4.205 13 N -0.579 5.579 14 Si 0.799 3.201 15 H -0.196 1.196 16 H -0.211 1.211 17 H -0.179 1.179 18 C -0.168 4.168 19 C -0.167 4.167 20 C -0.204 4.204 21 H 0.101 0.899 22 H 0.064 0.936 23 H 0.051 0.949 24 H 0.178 0.822 25 H 0.063 0.937 26 H 0.076 0.924 27 H 0.256 0.744 28 H 0.119 0.881 29 H 0.121 0.879 30 H 0.000 1.000 31 H -0.001 1.001 32 H 0.071 0.929 33 H 0.100 0.900 34 H 0.100 0.900 35 H 0.113 0.887 36 H 0.096 0.904 37 H 0.093 0.907 38 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 2.853 -7.632 -22.632 24.054 hybrid contribution -0.273 0.207 0.110 0.360 sum 2.579 -7.425 -22.522 23.854 Atomic orbital electron populations 1.22184 0.87260 1.02520 1.00317 1.60189 1.08270 1.11036 1.50368 1.22315 0.97172 0.89237 0.92227 1.21261 0.99618 0.93880 0.83720 1.45745 1.67726 1.18256 1.03928 1.21353 0.75945 0.87098 0.86082 1.90638 1.48015 1.21287 1.87729 1.21607 1.03999 0.99123 0.91036 1.18681 0.94529 0.94203 0.92080 1.21723 1.44589 1.00196 0.91634 0.90623 1.26156 0.94741 0.96207 1.03353 1.70187 1.47024 1.16133 1.24520 0.85297 0.78105 0.79149 0.77536 1.19632 1.21138 1.17892 1.23090 0.93896 1.03128 0.96682 1.22806 0.96004 1.02074 0.95839 1.23577 0.99093 1.01105 0.96630 0.89850 0.93614 0.94888 0.82233 0.93692 0.92417 0.74391 0.88095 0.87942 0.99994 1.00056 0.92857 0.90022 0.89955 0.88708 0.90354 0.90685 0.89847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 10.23 127.69 1.31 1.73 16 2 N -0.67 -10.08 6.03 -490.38 -2.96 -13.04 16 3 C 0.08 1.43 0.79 4.05 0.00 1.43 16 4 C 0.14 3.68 4.51 86.38 0.39 4.07 16 5 N -0.70 -20.91 5.44 -463.07 -2.52 -23.42 16 6 C 0.51 20.89 7.83 87.66 0.69 21.58 16 7 O -0.60 -30.78 15.98 -3.03 -0.05 -30.82 16 8 C -0.12 -5.00 5.64 29.85 0.17 -4.84 16 9 C 0.04 2.47 4.26 29.85 0.13 2.59 16 10 C -0.54 -31.76 9.11 25.60 0.23 -31.53 16 11 H 0.08 4.02 7.74 -2.91 -0.02 4.00 16 12 C -0.01 -0.43 5.46 84.65 0.46 0.03 16 13 N -0.94 -60.67 13.29 21.45 0.28 -60.38 16 14 Si 0.98 45.02 29.54 68.60 2.03 47.04 16 15 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 16 H -0.29 -13.02 7.11 99.48 0.71 -12.32 16 17 H -0.26 -10.92 7.11 99.48 0.71 -10.22 16 18 C -0.13 -1.93 7.36 31.12 0.23 -1.70 16 19 C -0.13 -1.43 7.74 31.12 0.24 -1.18 16 20 C -0.16 -2.31 7.15 31.12 0.22 -2.09 16 21 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 22 H 0.04 0.97 7.16 -2.39 -0.02 0.95 16 23 H 0.03 0.47 6.72 -2.39 -0.02 0.45 16 24 H 0.36 3.87 7.97 -89.69 -0.72 3.16 16 25 H 0.04 1.31 7.48 -2.38 -0.02 1.29 16 26 H 0.06 1.67 7.94 -2.39 -0.02 1.65 16 27 H 0.42 10.32 7.96 -92.71 -0.74 9.58 16 28 H 0.10 3.82 8.14 -2.39 -0.02 3.80 16 29 H 0.10 3.84 8.14 -2.39 -0.02 3.82 16 30 H -0.02 -1.20 8.10 -2.39 -0.02 -1.21 16 31 H -0.02 -1.24 8.10 -2.39 -0.02 -1.26 16 32 H 0.26 15.86 8.31 -92.71 -0.77 15.08 16 33 H 0.08 1.37 7.96 -2.39 -0.02 1.35 16 34 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.09 0.76 7.71 -2.39 -0.02 0.74 16 36 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 37 H 0.07 0.97 6.88 -2.39 -0.02 0.95 16 38 H 0.08 1.28 8.10 -2.38 -0.02 1.26 16 Total: -1.00 -76.24 310.52 0.45 -75.79 By element: Atomic # 1 Polarization: 15.15 SS G_CDS: -0.40 Total: 14.75 kcal Atomic # 6 Polarization: -13.99 SS G_CDS: 4.07 Total: -9.92 kcal Atomic # 7 Polarization: -91.65 SS G_CDS: -5.19 Total: -96.84 kcal Atomic # 8 Polarization: -30.78 SS G_CDS: -0.05 Total: -30.82 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.04 kcal Total: -76.24 0.45 -75.79 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600826135.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.528 kcal (2) G-P(sol) polarization free energy of solvation -76.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds