Wall clock time and date at job start Mon Mar 30 2020 17:53:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.47124 * 2 1 4 4 N 1.46900 * 109.47363 * 119.99882 * 2 1 3 5 5 C 1.46894 * 111.00321 * 155.00149 * 4 2 1 6 6 H 1.08999 * 109.50499 * 34.92144 * 5 4 2 7 7 C 1.53127 * 109.53470 * 274.82495 * 5 4 2 8 8 C 1.53123 * 109.15019 * 182.37963 * 7 5 4 9 9 C 1.53034 * 109.27992 * 57.67185 * 8 7 5 10 10 N 1.46847 * 109.51345 * 300.80438 * 9 8 7 11 11 C 1.46895 * 110.99982 * 185.84805 * 10 9 8 12 12 C 1.52998 * 109.47410 * 66.04209 * 11 10 9 13 13 C 1.50706 * 109.47302 * 180.02562 * 12 11 10 14 14 H 1.07994 * 120.00068 * 0.02562 * 13 12 11 15 15 C 1.37874 * 120.00016 * 180.02562 * 13 12 11 16 16 N 1.31512 * 120.00219 * 180.02562 * 15 13 12 17 17 Si 1.86802 * 120.00026 * 359.97438 * 15 13 12 18 18 H 1.48497 * 109.47131 * 90.00462 * 17 15 13 19 19 H 1.48504 * 109.47350 * 210.00452 * 17 15 13 20 20 H 1.48499 * 109.47125 * 329.99911 * 17 15 13 21 21 C 1.46843 * 111.20124 * 61.74903 * 10 9 8 22 22 H 1.09000 * 109.46876 * 300.00381 * 1 2 3 23 23 H 1.09001 * 109.46707 * 60.00376 * 1 2 3 24 24 H 1.08994 * 109.46698 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47694 * 240.00044 * 2 1 3 26 26 H 1.09001 * 109.47021 * 299.99432 * 3 2 1 27 27 H 1.08994 * 109.46889 * 59.99941 * 3 2 1 28 28 H 1.09000 * 109.46873 * 179.97438 * 3 2 1 29 29 H 1.00899 * 110.99522 * 31.04353 * 4 2 1 30 30 H 1.09003 * 109.52393 * 302.28772 * 7 5 4 31 31 H 1.08997 * 109.52177 * 62.41861 * 7 5 4 32 32 H 1.08997 * 109.51083 * 297.71779 * 8 7 5 33 33 H 1.08998 * 109.48980 * 177.60711 * 8 7 5 34 34 H 1.09002 * 109.46271 * 180.79158 * 9 8 7 35 35 H 1.08994 * 109.46242 * 60.81457 * 9 8 7 36 36 H 1.08997 * 109.47568 * 186.04497 * 11 10 9 37 37 H 1.09005 * 109.47099 * 306.04338 * 11 10 9 38 38 H 1.09005 * 109.47295 * 300.00102 * 12 11 10 39 39 H 1.09007 * 109.47401 * 59.99986 * 12 11 10 40 40 H 0.96995 * 120.00528 * 179.97438 * 16 15 13 41 41 H 1.08993 * 109.46313 * 58.27251 * 21 10 9 42 42 H 1.09000 * 109.46480 * 178.25361 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 3.3670 -1.2354 0.9807 6 1 3.9310 -0.5610 0.3364 7 6 3.2631 -2.6105 0.3152 8 6 4.6686 -3.1940 0.1455 9 6 5.3488 -3.2795 1.5138 10 7 5.4245 -1.9390 2.1085 11 6 6.1944 -1.9609 3.3594 12 6 7.6532 -2.3068 3.0545 13 6 8.4429 -2.3299 4.3379 14 1 7.9531 -2.1193 5.2771 15 6 9.7906 -2.6198 4.3130 16 7 10.4796 -2.6404 5.4330 17 14 10.6376 -2.9848 2.6886 18 1 11.1520 -1.7206 2.1036 19 1 11.7681 -3.9198 2.9188 20 1 9.6659 -3.6044 1.7520 21 6 4.0851 -1.3775 2.3248 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3632 -1.0276 -0.0005 25 1 1.8934 -0.5138 -0.8900 26 1 1.6768 1.9563 -0.8900 27 1 1.6767 1.9563 0.8899 28 1 3.1300 1.4425 0.0005 29 1 1.3793 -1.4181 1.4847 30 1 2.6663 -3.2740 0.9411 31 1 2.7900 -2.5077 -0.6613 32 1 5.2530 -2.5503 -0.5119 33 1 4.5984 -4.1911 -0.2890 34 1 6.3550 -3.6814 1.3947 35 1 4.7711 -3.9342 2.1662 36 1 6.1449 -0.9808 3.8337 37 1 5.7758 -2.7108 4.0306 38 1 7.7027 -3.2871 2.5803 39 1 8.0719 -1.5569 2.3833 40 1 11.4276 -2.8448 5.4156 41 1 3.5135 -2.0411 2.9735 42 1 4.1734 -0.3979 2.7945 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609386134.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:53:22 Heat of formation + Delta-G solvation = -16.140511 kcal Electronic energy + Delta-G solvation = -17801.339018 eV Core-core repulsion = 15201.250950 eV Total energy + Delta-G solvation = -2600.088069 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.26802 -36.88566 -34.03166 -32.47512 -31.49457 -29.86106 -27.75854 -27.29001 -25.26579 -22.70918 -22.39031 -20.70733 -19.97875 -19.52515 -16.88804 -15.89153 -15.78354 -14.84266 -14.71387 -14.56166 -14.12422 -13.70481 -13.44224 -13.39917 -12.84628 -12.69261 -12.54503 -12.40701 -12.20237 -11.73190 -11.63536 -11.35590 -11.14171 -11.02522 -10.97509 -10.74466 -10.49202 -10.41593 -10.05367 -9.70547 -9.60528 -9.15514 -8.49795 -8.45791 -7.77794 -6.01443 -3.99268 3.34848 3.41438 3.46207 3.86471 4.48809 4.54751 4.73189 4.83740 4.91570 4.93590 5.07167 5.17377 5.33171 5.40049 5.45687 5.53353 5.62476 5.66315 5.69044 5.72609 5.82778 5.86157 5.90961 5.96206 6.06302 6.13309 6.17375 6.26319 6.30559 6.41716 6.47639 6.81952 6.99746 7.20229 7.32308 7.38197 7.65532 7.71263 7.89460 8.56648 9.03075 9.61202 11.12031 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.041211 B = 0.004595 C = 0.004448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.270246 B = 6092.749255 C = 6293.104070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.079 3.921 3 C -0.141 4.141 4 N -0.682 5.682 5 C 0.091 3.909 6 H 0.085 0.915 7 C -0.146 4.146 8 C -0.112 4.112 9 C 0.052 3.948 10 N -0.542 5.542 11 C 0.073 3.927 12 C -0.007 4.007 13 C -0.520 4.520 14 H 0.071 0.929 15 C 0.067 3.933 16 N -0.905 5.905 17 Si 0.882 3.118 18 H -0.277 1.277 19 H -0.289 1.289 20 H -0.266 1.266 21 C 0.070 3.930 22 H 0.064 0.936 23 H 0.060 0.940 24 H 0.051 0.949 25 H 0.042 0.958 26 H 0.052 0.948 27 H 0.061 0.939 28 H 0.056 0.944 29 H 0.338 0.662 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.069 0.931 33 H 0.062 0.938 34 H 0.083 0.917 35 H 0.027 0.973 36 H 0.067 0.933 37 H 0.025 0.975 38 H 0.015 0.985 39 H 0.020 0.980 40 H 0.263 0.737 41 H 0.026 0.974 42 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.618 2.416 -12.923 22.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.030 4.030 3 C -0.199 4.199 4 N -0.313 5.313 5 C -0.019 4.019 6 H 0.103 0.897 7 C -0.186 4.186 8 C -0.151 4.151 9 C -0.076 4.076 10 N -0.267 5.267 11 C -0.053 4.053 12 C -0.045 4.045 13 C -0.559 4.559 14 H 0.089 0.911 15 C -0.134 4.134 16 N -0.544 5.544 17 Si 0.709 3.291 18 H -0.202 1.202 19 H -0.215 1.215 20 H -0.190 1.190 21 C -0.059 4.059 22 H 0.083 0.917 23 H 0.079 0.921 24 H 0.070 0.930 25 H 0.060 0.940 26 H 0.071 0.929 27 H 0.080 0.920 28 H 0.075 0.925 29 H 0.157 0.843 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.088 0.912 33 H 0.080 0.920 34 H 0.101 0.899 35 H 0.045 0.955 36 H 0.086 0.914 37 H 0.043 0.957 38 H 0.033 0.967 39 H 0.038 0.962 40 H 0.072 0.928 41 H 0.044 0.956 42 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -17.983 3.285 -12.870 22.357 hybrid contribution -0.044 -1.546 -0.722 1.707 sum -18.027 1.739 -13.592 22.644 Atomic orbital electron populations 1.21972 0.94977 1.01703 1.02478 1.21480 0.94386 0.95600 0.91569 1.21812 1.01450 0.95207 1.01411 1.60530 1.03595 1.33083 1.34104 1.21622 0.89322 0.93960 0.96980 0.89666 1.22291 0.97983 0.97935 1.00351 1.21526 0.95244 1.00497 0.97815 1.22118 1.01013 0.90103 0.94397 1.61945 1.14079 1.21998 1.28695 1.22092 0.95184 1.00337 0.87736 1.19579 0.91122 0.96248 0.97536 1.21101 0.93732 1.47689 0.93363 0.91134 1.24997 0.97364 0.94798 0.96251 1.69914 1.08230 1.49831 1.26415 0.86744 0.79161 0.78556 0.84613 1.20234 1.21539 1.19017 1.21926 0.88829 1.00001 0.95109 0.91741 0.92100 0.92960 0.93990 0.92911 0.92025 0.92510 0.84331 0.92346 0.92564 0.91196 0.91965 0.89918 0.95487 0.91432 0.95655 0.96673 0.96161 0.92764 0.95595 0.90398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.18 37.16 0.34 -0.81 16 2 C 0.08 0.74 3.04 -67.71 -0.21 0.53 16 3 C -0.14 -1.34 9.40 37.16 0.35 -0.99 16 4 N -0.68 -7.29 6.06 -99.65 -0.60 -7.90 16 5 C 0.09 1.13 2.44 -67.63 -0.16 0.97 16 6 H 0.09 1.16 7.12 -51.93 -0.37 0.79 16 7 C -0.15 -1.66 5.24 -26.60 -0.14 -1.80 16 8 C -0.11 -1.45 6.09 -26.65 -0.16 -1.61 16 9 C 0.05 0.83 5.29 -3.84 -0.02 0.81 16 10 N -0.54 -9.57 4.65 -234.68 -1.09 -10.66 16 11 C 0.07 1.53 4.90 -3.83 -0.02 1.51 16 12 C -0.01 -0.18 3.98 -27.88 -0.11 -0.29 16 13 C -0.52 -15.10 9.66 -34.44 -0.33 -15.43 16 14 H 0.07 2.19 7.99 -52.49 -0.42 1.77 16 15 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 16 N -0.90 -28.27 13.96 55.43 0.77 -27.50 16 17 Si 0.88 22.15 27.47 -169.99 -4.67 17.48 16 18 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 19 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 20 H -0.27 -6.41 6.54 56.52 0.37 -6.04 16 21 C 0.07 1.05 5.07 -3.83 -0.02 1.03 16 22 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 23 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 24 H 0.05 0.36 8.12 -51.93 -0.42 -0.06 16 25 H 0.04 0.40 7.15 -51.93 -0.37 0.03 16 26 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.06 0.61 7.43 -51.93 -0.39 0.22 16 29 H 0.34 3.30 8.06 -39.29 -0.32 2.99 16 30 H 0.06 0.65 8.10 -51.93 -0.42 0.23 16 31 H 0.06 0.58 7.48 -51.93 -0.39 0.19 16 32 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 33 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.08 1.47 6.22 -51.93 -0.32 1.15 16 35 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.07 1.42 7.98 -51.93 -0.41 1.00 16 37 H 0.03 0.54 8.12 -51.93 -0.42 0.11 16 38 H 0.02 0.37 5.50 -51.93 -0.29 0.09 16 39 H 0.02 0.50 7.57 -51.93 -0.39 0.11 16 40 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 41 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.08 1.22 8.01 -51.93 -0.42 0.81 16 LS Contribution 320.95 15.07 4.84 4.84 Total: -1.00 -30.19 320.95 -9.23 -39.42 By element: Atomic # 1 Polarization: 6.40 SS G_CDS: -7.90 Total: -1.50 kcal Atomic # 6 Polarization: -13.61 SS G_CDS: -0.58 Total: -14.19 kcal Atomic # 7 Polarization: -45.14 SS G_CDS: -0.92 Total: -46.06 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -4.67 Total: 17.48 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -30.19 -9.23 -39.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609386134.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.284 kcal (2) G-P(sol) polarization free energy of solvation -30.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds