Wall clock time and date at job start Mon Mar 30 2020 17:53:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53006 * 109.47124 * 2 1 4 4 N 1.46900 * 109.47363 * 119.99882 * 2 1 3 5 5 C 1.46894 * 111.00321 * 155.00149 * 4 2 1 6 6 H 1.08999 * 109.50499 * 34.92144 * 5 4 2 7 7 C 1.53127 * 109.53470 * 274.82495 * 5 4 2 8 8 C 1.53123 * 109.15019 * 182.37963 * 7 5 4 9 9 C 1.53034 * 109.27992 * 57.67185 * 8 7 5 10 10 N 1.46847 * 109.51345 * 300.80438 * 9 8 7 11 11 C 1.46895 * 110.99982 * 185.84805 * 10 9 8 12 12 C 1.52998 * 109.47410 * 66.04209 * 11 10 9 13 13 C 1.50706 * 109.47302 * 180.02562 * 12 11 10 14 14 H 1.07994 * 120.00068 * 0.02562 * 13 12 11 15 15 C 1.37874 * 120.00016 * 180.02562 * 13 12 11 16 16 N 1.31512 * 120.00219 * 180.02562 * 15 13 12 17 17 Si 1.86802 * 120.00026 * 359.97438 * 15 13 12 18 18 H 1.48497 * 109.47131 * 90.00462 * 17 15 13 19 19 H 1.48504 * 109.47350 * 210.00452 * 17 15 13 20 20 H 1.48499 * 109.47125 * 329.99911 * 17 15 13 21 21 C 1.46843 * 111.20124 * 61.74903 * 10 9 8 22 22 H 1.09000 * 109.46876 * 300.00381 * 1 2 3 23 23 H 1.09001 * 109.46707 * 60.00376 * 1 2 3 24 24 H 1.08994 * 109.46698 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.47694 * 240.00044 * 2 1 3 26 26 H 1.09001 * 109.47021 * 299.99432 * 3 2 1 27 27 H 1.08994 * 109.46889 * 59.99941 * 3 2 1 28 28 H 1.09000 * 109.46873 * 179.97438 * 3 2 1 29 29 H 1.00899 * 110.99522 * 31.04353 * 4 2 1 30 30 H 1.09003 * 109.52393 * 302.28772 * 7 5 4 31 31 H 1.08997 * 109.52177 * 62.41861 * 7 5 4 32 32 H 1.08997 * 109.51083 * 297.71779 * 8 7 5 33 33 H 1.08998 * 109.48980 * 177.60711 * 8 7 5 34 34 H 1.09002 * 109.46271 * 180.79158 * 9 8 7 35 35 H 1.08994 * 109.46242 * 60.81457 * 9 8 7 36 36 H 1.08997 * 109.47568 * 186.04497 * 11 10 9 37 37 H 1.09005 * 109.47099 * 306.04338 * 11 10 9 38 38 H 1.09005 * 109.47295 * 300.00102 * 12 11 10 39 39 H 1.09007 * 109.47401 * 59.99986 * 12 11 10 40 40 H 0.96995 * 120.00528 * 179.97438 * 16 15 13 41 41 H 1.08993 * 109.46313 * 58.27251 * 21 10 9 42 42 H 1.09000 * 109.46480 * 178.25361 * 21 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 3.3670 -1.2354 0.9807 6 1 3.9310 -0.5610 0.3364 7 6 3.2631 -2.6105 0.3152 8 6 4.6686 -3.1940 0.1455 9 6 5.3488 -3.2795 1.5138 10 7 5.4245 -1.9390 2.1085 11 6 6.1944 -1.9609 3.3594 12 6 7.6532 -2.3068 3.0545 13 6 8.4429 -2.3299 4.3379 14 1 7.9531 -2.1193 5.2771 15 6 9.7906 -2.6198 4.3130 16 7 10.4796 -2.6404 5.4330 17 14 10.6376 -2.9848 2.6886 18 1 11.1520 -1.7206 2.1036 19 1 11.7681 -3.9198 2.9188 20 1 9.6659 -3.6044 1.7520 21 6 4.0851 -1.3775 2.3248 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3632 -1.0276 -0.0005 25 1 1.8934 -0.5138 -0.8900 26 1 1.6768 1.9563 -0.8900 27 1 1.6767 1.9563 0.8899 28 1 3.1300 1.4425 0.0005 29 1 1.3793 -1.4181 1.4847 30 1 2.6663 -3.2740 0.9411 31 1 2.7900 -2.5077 -0.6613 32 1 5.2530 -2.5503 -0.5119 33 1 4.5984 -4.1911 -0.2890 34 1 6.3550 -3.6814 1.3947 35 1 4.7711 -3.9342 2.1662 36 1 6.1449 -0.9808 3.8337 37 1 5.7758 -2.7108 4.0306 38 1 7.7027 -3.2871 2.5803 39 1 8.0719 -1.5569 2.3833 40 1 11.4276 -2.8448 5.4156 41 1 3.5135 -2.0411 2.9735 42 1 4.1734 -0.3979 2.7945 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609386134.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:53:22 Heat of formation + Delta-G solvation = -36.873388 kcal Electronic energy + Delta-G solvation = -17802.238063 eV Core-core repulsion = 15201.250950 eV Total energy + Delta-G solvation = -2600.987114 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.40291 -37.93370 -35.62075 -34.28102 -32.49797 -31.66655 -28.77686 -27.99172 -26.97308 -24.27043 -23.54146 -21.77737 -21.34702 -20.71422 -19.03598 -16.98636 -16.74193 -16.42003 -16.05988 -15.68057 -15.54643 -15.08766 -14.74092 -14.48379 -14.44061 -14.20089 -13.70007 -13.33993 -13.25790 -12.92858 -12.84483 -12.58359 -12.44048 -12.16843 -11.99346 -11.96561 -11.83030 -11.77225 -11.59515 -11.54257 -11.31227 -11.13466 -10.75706 -9.33350 -9.18666 -8.30462 -6.34877 1.36529 1.37662 1.50450 2.36194 2.79452 3.04924 3.42424 3.83175 3.89158 4.02267 4.12648 4.13875 4.29227 4.37028 4.44733 4.47315 4.56584 4.63809 4.66268 4.78498 4.84976 4.90786 4.93351 5.00488 5.01301 5.02411 5.04502 5.10000 5.20843 5.27178 5.35335 5.38111 5.44052 5.48277 5.62163 6.11184 6.15028 6.26862 6.35184 6.54878 6.72699 7.29829 8.86379 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.041211 B = 0.004595 C = 0.004448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.270246 B = 6092.749255 C = 6293.104070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.079 3.921 3 C -0.140 4.140 4 N -0.688 5.688 5 C 0.102 3.898 6 H 0.074 0.926 7 C -0.138 4.138 8 C -0.106 4.106 9 C 0.048 3.952 10 N -0.547 5.547 11 C 0.084 3.916 12 C 0.002 3.998 13 C -0.534 4.534 14 H 0.031 0.969 15 C 0.006 3.994 16 N -0.951 5.951 17 Si 0.953 3.047 18 H -0.267 1.267 19 H -0.282 1.282 20 H -0.248 1.248 21 C 0.072 3.928 22 H 0.059 0.941 23 H 0.072 0.928 24 H 0.060 0.940 25 H 0.045 0.955 26 H 0.068 0.932 27 H 0.054 0.946 28 H 0.039 0.961 29 H 0.346 0.654 30 H 0.065 0.935 31 H 0.076 0.924 32 H 0.066 0.934 33 H 0.083 0.917 34 H 0.064 0.936 35 H 0.028 0.972 36 H 0.058 0.942 37 H 0.016 0.984 38 H 0.021 0.979 39 H 0.019 0.981 40 H 0.267 0.733 41 H 0.026 0.974 42 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.037 1.948 -15.742 25.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.030 4.030 3 C -0.198 4.198 4 N -0.320 5.320 5 C -0.009 4.009 6 H 0.093 0.907 7 C -0.177 4.177 8 C -0.144 4.144 9 C -0.080 4.080 10 N -0.272 5.272 11 C -0.043 4.043 12 C -0.036 4.036 13 C -0.573 4.573 14 H 0.049 0.951 15 C -0.191 4.191 16 N -0.591 5.591 17 Si 0.777 3.223 18 H -0.192 1.192 19 H -0.208 1.208 20 H -0.171 1.171 21 C -0.057 4.057 22 H 0.078 0.922 23 H 0.091 0.909 24 H 0.079 0.921 25 H 0.063 0.937 26 H 0.087 0.913 27 H 0.073 0.927 28 H 0.059 0.941 29 H 0.165 0.835 30 H 0.083 0.917 31 H 0.094 0.906 32 H 0.084 0.916 33 H 0.102 0.898 34 H 0.083 0.917 35 H 0.046 0.954 36 H 0.077 0.923 37 H 0.034 0.966 38 H 0.039 0.961 39 H 0.038 0.962 40 H 0.076 0.924 41 H 0.044 0.956 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -19.437 2.820 -15.697 25.143 hybrid contribution 0.349 -1.358 0.258 1.426 sum -19.088 1.462 -15.439 24.594 Atomic orbital electron populations 1.21924 0.93365 1.02403 1.02881 1.21535 0.95629 0.95004 0.90861 1.21815 1.00370 0.95752 1.01890 1.60449 1.02971 1.33353 1.35188 1.21399 0.89871 0.94704 0.94877 0.90738 1.22230 0.97212 0.96913 1.01390 1.21495 0.95651 1.01862 0.95442 1.22195 1.00503 0.88989 0.96290 1.61890 1.15446 1.23291 1.26545 1.21781 0.93877 0.99434 0.89228 1.19431 0.92664 0.96405 0.95069 1.21420 0.94502 1.47538 0.93835 0.95084 1.25986 0.98147 0.94454 1.00464 1.70061 1.08851 1.51069 1.29144 0.85610 0.78206 0.78901 0.79622 1.19206 1.20758 1.17126 1.21952 0.87671 0.99031 0.97013 0.92152 0.90898 0.92119 0.93724 0.91291 0.92726 0.94146 0.83501 0.91660 0.90550 0.91554 0.89846 0.91726 0.95410 0.92301 0.96586 0.96118 0.96242 0.92396 0.95569 0.91619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 9.18 71.98 0.66 -1.14 16 2 C 0.08 1.28 3.04 44.92 0.14 1.41 16 3 C -0.14 -2.44 9.40 71.98 0.68 -1.77 16 4 N -0.69 -13.33 6.06 -469.18 -2.84 -16.17 16 5 C 0.10 2.34 2.44 44.97 0.11 2.45 16 6 H 0.07 1.90 7.12 -2.39 -0.02 1.89 16 7 C -0.14 -2.71 5.24 30.68 0.16 -2.55 16 8 C -0.11 -2.44 6.09 30.65 0.19 -2.25 16 9 C 0.05 1.48 5.29 86.32 0.46 1.94 16 10 N -0.55 -18.99 4.65 -896.40 -4.17 -23.16 16 11 C 0.08 3.59 4.90 86.30 0.42 4.01 16 12 C 0.00 0.10 3.98 29.85 0.12 0.22 16 13 C -0.53 -31.90 9.66 25.60 0.25 -31.65 16 14 H 0.03 2.03 7.99 -2.91 -0.02 2.00 16 15 C 0.01 0.38 5.47 84.65 0.46 0.84 16 16 N -0.95 -60.78 13.96 21.45 0.30 -60.48 16 17 Si 0.95 45.45 27.47 68.60 1.88 47.34 16 18 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 19 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 20 H -0.25 -11.01 6.54 99.48 0.65 -10.36 16 21 C 0.07 2.10 5.07 86.33 0.44 2.54 16 22 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 23 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 24 H 0.06 0.65 8.12 -2.39 -0.02 0.63 16 25 H 0.04 0.72 7.15 -2.39 -0.02 0.70 16 26 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 27 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 28 H 0.04 0.82 7.43 -2.39 -0.02 0.81 16 29 H 0.35 5.88 8.06 -89.70 -0.72 5.16 16 30 H 0.06 1.23 8.10 -2.39 -0.02 1.21 16 31 H 0.08 1.25 7.48 -2.39 -0.02 1.24 16 32 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 34 H 0.06 2.21 6.22 -2.39 -0.01 2.20 16 35 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 36 H 0.06 2.56 7.98 -2.39 -0.02 2.54 16 37 H 0.02 0.70 8.12 -2.38 -0.02 0.68 16 38 H 0.02 1.00 5.50 -2.38 -0.01 0.98 16 39 H 0.02 0.95 7.57 -2.38 -0.02 0.93 16 40 H 0.27 15.86 8.31 -92.71 -0.77 15.09 16 41 H 0.03 0.77 8.14 -2.39 -0.02 0.75 16 42 H 0.07 2.07 8.01 -2.39 -0.02 2.05 16 Total: -1.00 -65.88 320.95 -0.57 -66.46 By element: Atomic # 1 Polarization: 11.79 SS G_CDS: 0.18 Total: 11.97 kcal Atomic # 6 Polarization: -30.03 SS G_CDS: 4.08 Total: -25.95 kcal Atomic # 7 Polarization: -93.10 SS G_CDS: -6.72 Total: -99.81 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 1.88 Total: 47.34 kcal Total: -65.88 -0.57 -66.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609386134.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.585 kcal (2) G-P(sol) polarization free energy of solvation -65.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds