Wall clock time and date at job start Mon Mar 30 2020 17:53:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.52999 * 109.47608 * 2 1 4 4 H 1.08999 * 109.46695 * 54.99743 * 3 2 1 5 5 C 1.53003 * 109.47058 * 295.00118 * 3 2 1 6 6 C 1.53000 * 109.47677 * 174.99814 * 3 2 1 7 7 N 1.46893 * 109.47310 * 185.26653 * 6 3 2 8 8 C 1.46958 * 110.99821 * 199.56639 * 7 6 3 9 9 C 1.53057 * 109.36491 * 176.80993 * 8 7 6 10 10 N 1.46959 * 109.36095 * 58.40139 * 9 8 7 11 11 C 1.46902 * 110.99486 * 176.81190 * 10 9 8 12 12 C 1.50696 * 109.47215 * 293.80006 * 11 10 9 13 13 H 1.07995 * 120.00258 * 0.02562 * 12 11 10 14 14 C 1.37878 * 119.99877 * 180.02562 * 12 11 10 15 15 N 1.31509 * 120.00240 * 0.02562 * 14 12 11 16 16 Si 1.86804 * 119.99792 * 179.97438 * 14 12 11 17 17 H 1.48496 * 109.47125 * 60.00194 * 16 14 12 18 18 H 1.48503 * 109.46962 * 180.02562 * 16 14 12 19 19 H 1.48500 * 109.47103 * 299.99942 * 16 14 12 20 20 C 1.46958 * 110.88184 * 300.67858 * 10 9 8 21 21 C 1.46955 * 111.00081 * 75.77026 * 7 6 3 22 22 H 1.09008 * 109.47125 * 60.00085 * 1 2 3 23 23 H 1.09004 * 109.47414 * 300.00140 * 1 2 3 24 24 H 1.09001 * 109.47767 * 180.02562 * 1 2 3 25 25 H 1.09008 * 109.47125 * 119.99915 * 2 1 3 26 26 H 1.09003 * 109.47516 * 239.99315 * 2 1 3 27 27 H 1.08998 * 109.47162 * 65.28994 * 5 3 2 28 28 H 1.08991 * 109.47269 * 185.29579 * 5 3 2 29 29 H 1.09005 * 109.46525 * 305.29664 * 5 3 2 30 30 H 1.09005 * 109.46710 * 305.26757 * 6 3 2 31 31 H 1.09004 * 109.46744 * 65.25984 * 6 3 2 32 32 H 1.08998 * 109.49229 * 296.78117 * 8 7 6 33 33 H 1.09002 * 109.48643 * 56.84526 * 8 7 6 34 34 H 1.09001 * 109.48485 * 298.43468 * 9 8 7 35 35 H 1.08993 * 109.48754 * 178.36982 * 9 8 7 36 36 H 1.08999 * 109.47108 * 53.80274 * 11 10 9 37 37 H 1.08995 * 109.46797 * 173.80078 * 11 10 9 38 38 H 0.97001 * 120.00647 * 180.02562 * 15 14 12 39 39 H 1.08997 * 109.48733 * 299.35838 * 20 10 9 40 40 H 1.08994 * 109.48850 * 179.28695 * 20 10 9 41 41 H 1.09003 * 109.48931 * 303.15121 * 21 7 6 42 42 H 1.08998 * 109.48990 * 63.22019 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6353 2.1265 -1.3074 6 6 3.5648 1.4443 0.1258 7 7 4.0441 2.8271 0.2526 8 6 5.4710 2.9230 -0.0858 9 6 5.9111 4.3874 -0.0187 10 7 5.6562 4.9114 1.3304 11 6 6.1355 6.2943 1.4571 12 6 7.6381 6.3174 1.3449 13 1 8.1826 5.3970 1.1942 14 6 8.3178 7.5136 1.4348 15 7 7.6549 8.6344 1.6189 16 14 10.1805 7.5422 1.2965 17 1 10.5872 6.9968 -0.0234 18 1 10.6650 8.9400 1.4257 19 1 10.7699 6.7125 2.3779 20 6 4.2293 4.8155 1.6687 21 6 3.7893 3.3511 1.6016 22 1 -0.3634 0.5139 -0.8901 23 1 -0.3634 0.5139 0.8900 24 1 -0.3635 -1.0276 0.0005 25 1 1.8933 -0.5139 0.8901 26 1 1.8933 -0.5139 -0.8899 27 1 0.5494 2.2094 -1.3530 28 1 2.0777 3.1217 -1.3488 29 1 1.9904 1.5355 -2.1517 30 1 3.8572 0.8760 1.0088 31 1 4.0031 0.9877 -0.7617 32 1 6.0533 2.3354 0.6239 33 1 5.6322 2.5406 -1.0937 34 1 5.3478 4.9700 -0.7477 35 1 6.9758 4.4576 -0.2410 36 1 5.7025 6.9031 0.6634 37 1 5.8373 6.6948 2.4259 38 1 8.1329 9.4761 1.6818 39 1 3.6471 5.4031 0.9589 40 1 4.0681 5.1978 2.6766 41 1 2.7245 3.2809 1.8240 42 1 4.3525 2.7684 2.3305 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611175333.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:53:29 Heat of formation + Delta-G solvation = -10.718503 kcal Electronic energy + Delta-G solvation = -17860.792723 eV Core-core repulsion = 15260.939770 eV Total energy + Delta-G solvation = -2599.852953 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.96397 -36.75398 -34.36466 -32.39755 -30.41324 -30.01679 -27.96982 -26.16586 -24.66706 -22.99893 -22.53116 -21.28641 -19.75810 -19.09757 -16.28516 -15.85498 -15.30521 -14.91147 -14.53849 -14.49557 -14.18313 -13.72204 -13.57340 -13.14583 -13.05854 -12.49998 -12.10635 -12.00847 -11.97362 -11.66455 -11.27334 -11.15391 -10.99504 -10.80354 -10.71598 -10.63286 -10.58190 -10.55518 -10.25212 -10.09834 -9.66205 -9.15421 -8.41466 -8.03649 -7.18392 -6.00407 -4.01899 3.34698 3.38582 3.41524 4.10590 4.44126 4.76063 4.86372 4.95342 5.01221 5.19928 5.34861 5.37629 5.46782 5.50299 5.57360 5.61717 5.67171 5.77706 5.86152 5.86724 5.89919 5.96259 5.97187 6.02958 6.10668 6.13485 6.25062 6.37871 6.48325 6.50287 6.65163 6.73263 7.25313 7.34117 7.39813 7.44167 7.82521 8.12587 8.24906 8.58825 9.05488 9.62172 11.10479 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.058635 B = 0.004309 C = 0.004195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 477.416868 B = 6495.903506 C = 6673.169096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.120 4.120 3 C -0.086 4.086 4 H 0.069 0.931 5 C -0.138 4.138 6 C 0.059 3.941 7 N -0.537 5.537 8 C 0.059 3.941 9 C 0.068 3.932 10 N -0.539 5.539 11 C 0.194 3.806 12 C -0.508 4.508 13 H 0.062 0.938 14 C 0.055 3.945 15 N -0.899 5.899 16 Si 0.898 3.102 17 H -0.277 1.277 18 H -0.288 1.288 19 H -0.276 1.276 20 C 0.057 3.943 21 C 0.061 3.939 22 H 0.056 0.944 23 H 0.052 0.948 24 H 0.049 0.951 25 H 0.058 0.942 26 H 0.060 0.940 27 H 0.046 0.954 28 H 0.069 0.931 29 H 0.046 0.954 30 H 0.031 0.969 31 H 0.068 0.932 32 H 0.036 0.964 33 H 0.068 0.932 34 H 0.028 0.972 35 H 0.085 0.915 36 H -0.009 1.009 37 H 0.029 0.971 38 H 0.262 0.738 39 H 0.030 0.970 40 H 0.070 0.930 41 H 0.069 0.931 42 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.501 -14.901 -3.660 19.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.158 4.158 3 C -0.105 4.105 4 H 0.087 0.913 5 C -0.196 4.196 6 C -0.069 4.069 7 N -0.262 5.262 8 C -0.069 4.069 9 C -0.061 4.061 10 N -0.264 5.264 11 C 0.069 3.931 12 C -0.546 4.546 13 H 0.080 0.920 14 C -0.146 4.146 15 N -0.539 5.539 16 Si 0.726 3.274 17 H -0.203 1.203 18 H -0.214 1.214 19 H -0.202 1.202 20 C -0.072 4.072 21 C -0.067 4.067 22 H 0.075 0.925 23 H 0.071 0.929 24 H 0.069 0.931 25 H 0.076 0.924 26 H 0.078 0.922 27 H 0.065 0.935 28 H 0.088 0.912 29 H 0.065 0.935 30 H 0.049 0.951 31 H 0.086 0.914 32 H 0.055 0.945 33 H 0.087 0.913 34 H 0.046 0.954 35 H 0.103 0.897 36 H 0.009 0.991 37 H 0.047 0.953 38 H 0.071 0.929 39 H 0.048 0.952 40 H 0.088 0.912 41 H 0.087 0.913 42 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -11.459 -14.686 -3.633 18.978 hybrid contribution 1.008 0.160 -0.006 1.021 sum -10.451 -14.525 -3.639 18.260 Atomic orbital electron populations 1.21792 0.95946 1.01191 1.01958 1.21566 0.95874 0.96662 1.01667 1.21141 0.94846 0.95343 0.99196 0.91272 1.21746 1.00031 1.01722 0.96065 1.22136 0.95147 0.89338 1.00283 1.62114 1.17742 1.19326 1.27003 1.22242 0.86939 0.98151 0.99598 1.21982 1.01288 0.92378 0.90427 1.62277 1.13508 1.25485 1.25135 1.19690 0.95518 0.81607 0.96314 1.21124 0.91388 0.93075 1.49041 0.91999 1.24990 0.98613 0.95530 0.95469 1.69947 1.35690 0.98092 1.50135 0.86564 0.85376 0.76849 0.78629 1.20270 1.21368 1.20203 1.22058 0.90515 0.94379 1.00290 1.22178 0.99604 0.96198 0.88711 0.92463 0.92866 0.93142 0.92355 0.92153 0.93536 0.91214 0.93513 0.95061 0.91359 0.94532 0.91322 0.95383 0.89682 0.99099 0.95284 0.92881 0.95223 0.91191 0.91289 0.94523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.67 37.15 0.36 -0.86 16 2 C -0.12 -1.06 5.40 -26.74 -0.14 -1.21 16 3 C -0.09 -0.92 2.44 -90.62 -0.22 -1.14 16 4 H 0.07 0.79 6.73 -51.93 -0.35 0.44 16 5 C -0.14 -1.50 8.76 37.16 0.33 -1.17 16 6 C 0.06 0.72 4.39 -3.83 -0.02 0.70 16 7 N -0.54 -8.06 4.02 -234.46 -0.94 -9.00 16 8 C 0.06 0.96 5.57 -3.76 -0.02 0.94 16 9 C 0.07 1.37 5.43 -3.76 -0.02 1.35 16 10 N -0.54 -12.00 4.70 -235.91 -1.11 -13.10 16 11 C 0.19 5.17 4.72 -4.98 -0.02 5.15 16 12 C -0.51 -14.44 8.47 -34.44 -0.29 -14.73 16 13 H 0.06 1.73 7.13 -52.49 -0.37 1.36 16 14 C 0.06 1.58 5.46 -17.82 -0.10 1.49 16 15 N -0.90 -27.03 13.29 55.43 0.74 -26.30 16 16 Si 0.90 21.80 29.54 -169.99 -5.02 16.78 16 17 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 18 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 19 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 20 C 0.06 1.07 5.61 -3.76 -0.02 1.05 16 21 C 0.06 0.96 5.43 -3.77 -0.02 0.94 16 22 H 0.06 0.46 6.69 -51.92 -0.35 0.11 16 23 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 24 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 25 H 0.06 0.51 8.14 -51.92 -0.42 0.09 16 26 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 27 H 0.05 0.45 6.83 -51.93 -0.35 0.10 16 28 H 0.07 0.90 7.62 -51.93 -0.40 0.50 16 29 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.03 0.38 8.00 -51.93 -0.42 -0.03 16 31 H 0.07 0.79 7.85 -51.93 -0.41 0.39 16 32 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.07 0.99 8.00 -51.93 -0.42 0.58 16 34 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 35 H 0.08 1.82 6.79 -51.93 -0.35 1.47 16 36 H -0.01 -0.25 8.12 -51.93 -0.42 -0.67 16 37 H 0.03 0.82 8.03 -51.93 -0.42 0.41 16 38 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 39 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.07 1.29 8.07 -51.93 -0.42 0.87 16 41 H 0.07 0.95 6.71 -51.93 -0.35 0.60 16 42 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 LS Contribution 322.35 15.07 4.86 4.86 Total: -1.00 -29.50 322.35 -9.63 -39.12 By element: Atomic # 1 Polarization: 3.10 SS G_CDS: -7.96 Total: -4.86 kcal Atomic # 6 Polarization: -7.31 SS G_CDS: -0.19 Total: -7.50 kcal Atomic # 7 Polarization: -47.09 SS G_CDS: -1.32 Total: -48.40 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -29.50 -9.63 -39.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611175333.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.406 kcal (2) G-P(sol) polarization free energy of solvation -29.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds