Wall clock time and date at job start Mon Mar 30 2020 17:53:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46492 * 109.47096 * 2 1 4 4 C 1.37101 * 120.00087 * 264.32055 * 3 2 1 5 5 H 1.08000 * 119.99895 * 187.79500 * 4 3 2 6 6 C 1.38954 * 119.99970 * 7.79237 * 4 3 2 7 7 N 1.31411 * 119.99812 * 25.41358 * 6 4 3 8 8 Si 1.86798 * 119.99844 * 205.41563 * 6 4 3 9 9 H 1.48506 * 109.47290 * 84.99036 * 8 6 4 10 10 H 1.48506 * 109.46822 * 204.98675 * 8 6 4 11 11 H 1.48496 * 109.47604 * 324.98669 * 8 6 4 12 12 C 1.34780 * 120.00180 * 84.32010 * 3 2 1 13 13 O 1.21294 * 120.00104 * 179.97438 * 12 3 2 14 14 C 1.50700 * 119.99688 * 0.02562 * 12 3 2 15 15 H 1.08996 * 109.45858 * 320.01707 * 14 12 3 16 16 C 1.53035 * 109.46240 * 79.99683 * 14 12 3 17 17 C 1.53121 * 109.27588 * 179.19219 * 16 14 12 18 18 C 1.53119 * 109.16135 * 302.34786 * 17 16 14 19 19 C 1.53042 * 109.27921 * 57.65575 * 18 17 16 20 20 N 1.46841 * 109.52094 * 300.81804 * 19 18 17 21 21 C 1.46901 * 110.99955 * 185.83836 * 20 19 18 22 22 H 1.09004 * 109.47228 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.46603 * 299.99910 * 1 2 3 24 24 H 1.08994 * 109.47382 * 59.99533 * 1 2 3 25 25 H 1.08998 * 109.46603 * 240.00090 * 2 1 3 26 26 H 1.08994 * 109.47382 * 120.00467 * 2 1 3 27 27 H 0.97002 * 120.00009 * 180.02562 * 7 6 4 28 28 H 1.08999 * 109.50286 * 59.26017 * 16 14 12 29 29 H 1.08996 * 109.50621 * 299.13528 * 16 14 12 30 30 H 1.09005 * 109.52154 * 62.25221 * 17 16 14 31 31 H 1.09004 * 109.52447 * 182.44011 * 17 16 14 32 32 H 1.09004 * 109.50334 * 177.59278 * 18 17 16 33 33 H 1.09001 * 109.50671 * 297.71079 * 18 17 16 34 34 H 1.08996 * 109.46023 * 180.80259 * 19 18 17 35 35 H 1.08997 * 109.45495 * 60.82876 * 19 18 17 36 36 H 1.08996 * 109.47239 * 295.78829 * 21 20 19 37 37 H 1.08998 * 109.46744 * 55.79522 * 21 20 19 38 38 H 1.08999 * 109.47038 * 175.79131 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.3577 1.9883 -1.1815 5 1 2.8346 2.9573 -1.1732 6 6 2.0880 1.3569 -2.3896 7 7 1.1136 0.4788 -2.4688 8 14 3.1106 1.7565 -3.9009 9 1 4.3391 0.9222 -3.9021 10 1 2.3180 1.4721 -5.1241 11 1 3.4875 3.1926 -3.8781 12 6 2.1341 2.0550 1.1615 13 8 2.5389 3.1985 1.1615 14 6 1.7617 1.3875 2.4602 15 1 0.8619 0.7894 2.3161 16 6 2.9084 0.4820 2.9153 17 6 2.5339 -0.1784 4.2450 18 6 2.2296 0.9098 5.2784 19 6 1.1025 1.8028 4.7548 20 7 1.5098 2.4116 3.4821 21 6 0.5095 3.3826 3.0190 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3632 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5139 0.8899 27 1 0.9255 0.0378 -3.3121 28 1 3.8120 1.0773 3.0465 29 1 3.0848 -0.2875 2.1637 30 1 1.6528 -0.8047 4.1052 31 1 3.3653 -0.7906 4.5947 32 1 1.9208 0.4458 6.2152 33 1 3.1225 1.5118 5.4468 34 1 0.8931 2.5873 5.4820 35 1 0.2060 1.2026 4.5998 36 1 -0.4259 2.8660 2.8038 37 1 0.3420 4.1296 3.7948 38 1 0.8702 3.8725 2.1146 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611213577.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:53:30 Heat of formation + Delta-G solvation = -37.312070 kcal Electronic energy + Delta-G solvation = -18781.089242 eV Core-core repulsion = 16044.250011 eV Total energy + Delta-G solvation = -2736.839231 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.23161 -38.88518 -36.97943 -34.41057 -33.84515 -31.93199 -31.17047 -27.94224 -26.87758 -24.81266 -23.77241 -23.69097 -21.13348 -20.22789 -18.80189 -18.02436 -16.87066 -16.37465 -16.12658 -15.88547 -15.44324 -15.26384 -14.90005 -14.62405 -14.15376 -13.94616 -13.92737 -13.61868 -13.28594 -12.89678 -12.81729 -12.69875 -12.52451 -12.29442 -12.13929 -11.97163 -11.83980 -11.63900 -11.50690 -11.22453 -10.81151 -10.07147 -9.68868 -9.18259 -8.32725 -5.82099 1.36065 1.42546 1.52669 2.02354 2.27518 2.81816 3.04514 3.25593 3.83429 3.89690 4.04785 4.15070 4.24609 4.33074 4.42682 4.46593 4.57222 4.61113 4.76564 4.83856 4.86198 4.90814 5.00119 5.07344 5.11161 5.14195 5.20815 5.27188 5.41220 5.47283 5.50409 5.86498 5.95549 6.14248 6.29822 6.58189 7.22618 7.53420 8.12466 8.65153 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.035492 B = 0.007560 C = 0.007244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.711098 B = 3702.599520 C = 3864.517062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.118 3.882 3 N -0.453 5.453 4 C -0.350 4.350 5 H 0.069 0.931 6 C 0.006 3.994 7 N -0.868 5.868 8 Si 0.978 3.022 9 H -0.269 1.269 10 H -0.272 1.272 11 H -0.281 1.281 12 C 0.437 3.563 13 O -0.622 6.622 14 C 0.088 3.912 15 H 0.057 0.943 16 C -0.107 4.107 17 C -0.112 4.112 18 C -0.113 4.113 19 C 0.052 3.948 20 N -0.537 5.537 21 C 0.026 3.974 22 H 0.067 0.933 23 H 0.024 0.976 24 H 0.061 0.939 25 H 0.083 0.917 26 H 0.064 0.936 27 H 0.273 0.727 28 H 0.053 0.947 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.087 0.913 32 H 0.097 0.903 33 H 0.062 0.938 34 H 0.088 0.912 35 H 0.036 0.964 36 H 0.018 0.982 37 H 0.084 0.916 38 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.610 -6.127 11.143 12.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.004 4.004 3 N -0.172 5.172 4 C -0.478 4.478 5 H 0.087 0.913 6 C -0.197 4.197 7 N -0.506 5.506 8 Si 0.802 3.198 9 H -0.195 1.195 10 H -0.197 1.197 11 H -0.207 1.207 12 C 0.226 3.774 13 O -0.509 6.509 14 C -0.023 4.023 15 H 0.074 0.926 16 C -0.145 4.145 17 C -0.150 4.150 18 C -0.150 4.150 19 C -0.075 4.075 20 N -0.263 5.263 21 C -0.122 4.122 22 H 0.086 0.914 23 H 0.043 0.957 24 H 0.079 0.921 25 H 0.101 0.899 26 H 0.082 0.918 27 H 0.084 0.916 28 H 0.072 0.928 29 H 0.089 0.911 30 H 0.090 0.910 31 H 0.105 0.895 32 H 0.116 0.884 33 H 0.081 0.919 34 H 0.107 0.893 35 H 0.054 0.946 36 H 0.036 0.964 37 H 0.103 0.897 38 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -1.088 -5.472 11.047 12.375 hybrid contribution -0.429 0.150 -1.377 1.450 sum -1.517 -5.322 9.670 11.141 Atomic orbital electron populations 1.21982 0.95884 1.01171 1.00412 1.21602 0.95151 0.82388 1.01291 1.44030 1.55763 1.12365 1.04994 1.19544 1.39097 1.05101 0.84055 0.91286 1.25799 0.96282 0.96923 1.00657 1.70188 1.24505 1.28263 1.27652 0.85194 0.78796 0.78343 0.77427 1.19484 1.19682 1.20664 1.20653 0.84256 0.86639 0.85862 1.90432 1.52713 1.20284 1.87470 1.21435 0.99138 0.92375 0.89390 0.92562 1.21604 0.96517 0.97331 0.99059 1.21590 1.02529 0.97706 0.93127 1.21616 0.98333 0.96386 0.98701 1.22288 0.97112 0.98051 0.90073 1.61574 1.45471 1.15720 1.03519 1.22385 0.92045 0.96036 1.01768 0.91423 0.95664 0.92052 0.89851 0.91779 0.91643 0.92786 0.91141 0.91042 0.89475 0.88423 0.91943 0.89322 0.94578 0.96381 0.89714 0.93059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.64 9.52 71.98 0.69 -4.95 16 2 C 0.12 5.26 4.95 86.38 0.43 5.68 16 3 N -0.45 -23.82 2.64 -635.54 -1.68 -25.49 16 4 C -0.35 -20.26 9.43 84.04 0.79 -19.47 16 5 H 0.07 4.37 7.31 -2.91 -0.02 4.35 16 6 C 0.01 0.33 4.90 84.93 0.42 0.75 16 7 N -0.87 -44.12 8.60 21.66 0.19 -43.94 16 8 Si 0.98 42.46 29.62 68.60 2.03 44.49 16 9 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 10 H -0.27 -11.13 7.11 99.48 0.71 -10.43 16 11 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 12 C 0.44 22.41 6.02 87.66 0.53 22.94 16 13 O -0.62 -37.02 14.12 -3.07 -0.04 -37.06 16 14 C 0.09 3.48 1.42 44.19 0.06 3.54 16 15 H 0.06 2.15 5.60 -2.39 -0.01 2.14 16 16 C -0.11 -3.53 5.13 30.65 0.16 -3.37 16 17 C -0.11 -2.59 6.00 30.67 0.18 -2.41 16 18 C -0.11 -2.46 6.09 30.65 0.19 -2.28 16 19 C 0.05 1.36 5.46 86.33 0.47 1.83 16 20 N -0.54 -19.69 4.51 -901.62 -4.07 -23.76 16 21 C 0.03 0.97 9.10 127.69 1.16 2.13 16 22 H 0.07 2.35 8.14 -2.38 -0.02 2.33 16 23 H 0.02 0.98 6.56 -2.39 -0.02 0.97 16 24 H 0.06 2.96 6.34 -2.39 -0.02 2.94 16 25 H 0.08 3.99 5.84 -2.39 -0.01 3.97 16 26 H 0.06 2.44 4.96 -2.39 -0.01 2.43 16 27 H 0.27 12.99 8.31 -92.71 -0.77 12.22 16 28 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 29 H 0.07 2.30 6.19 -2.39 -0.01 2.28 16 30 H 0.07 1.51 8.14 -2.38 -0.02 1.49 16 31 H 0.09 1.65 8.14 -2.38 -0.02 1.63 16 32 H 0.10 1.51 8.14 -2.38 -0.02 1.49 16 33 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 34 H 0.09 2.02 8.09 -2.39 -0.02 2.00 16 35 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.02 0.63 8.14 -2.39 -0.02 0.61 16 37 H 0.08 2.64 8.09 -2.39 -0.02 2.62 16 38 H 0.05 2.41 5.63 -2.39 -0.01 2.39 16 Total: -1.00 -66.72 286.88 2.54 -64.17 By element: Atomic # 1 Polarization: 16.15 SS G_CDS: 1.04 Total: 17.19 kcal Atomic # 6 Polarization: -0.68 SS G_CDS: 5.07 Total: 4.39 kcal Atomic # 7 Polarization: -87.63 SS G_CDS: -5.55 Total: -93.19 kcal Atomic # 8 Polarization: -37.02 SS G_CDS: -0.04 Total: -37.06 kcal Atomic # 14 Polarization: 42.46 SS G_CDS: 2.03 Total: 44.49 kcal Total: -66.72 2.54 -64.17 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611213577.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.862 kcal (2) G-P(sol) polarization free energy of solvation -66.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds