Wall clock time and date at job start Mon Mar 30 2020 17:53:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47094 * 2 1 4 4 C 1.52999 * 109.47167 * 240.00071 * 2 1 3 5 5 C 1.50697 * 109.47215 * 174.99522 * 4 2 1 6 6 H 1.08000 * 119.99913 * 0.02562 * 5 4 2 7 7 C 1.37878 * 120.00194 * 179.97438 * 5 4 2 8 8 N 1.31511 * 119.99842 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00043 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.47016 * 90.00447 * 9 7 5 11 11 H 1.48502 * 109.47285 * 210.00198 * 9 7 5 12 12 H 1.48498 * 109.47279 * 330.00775 * 9 7 5 13 13 N 1.46898 * 109.46802 * 119.99986 * 2 1 3 14 14 C 1.49006 * 110.97398 * 48.94612 * 13 2 1 15 15 C 1.54937 * 103.00367 * 200.29757 * 14 13 2 16 16 C 1.54589 * 103.08364 * 37.39122 * 15 14 13 17 17 H 1.09007 * 110.31112 * 96.87305 * 16 15 14 18 18 N 1.46902 * 110.31066 * 219.04158 * 16 15 14 19 19 C 1.46900 * 111.00171 * 200.83015 * 18 16 15 20 20 C 1.46903 * 110.99740 * 324.77832 * 18 16 15 21 21 C 1.47898 * 111.00277 * 291.49236 * 13 2 1 22 22 H 1.09003 * 109.91462 * 26.49850 * 21 13 2 23 23 C 1.52994 * 109.92292 * 265.20170 * 21 13 2 24 24 H 1.08998 * 109.47431 * 292.36784 * 1 2 3 25 25 H 1.09003 * 109.47508 * 52.37094 * 1 2 3 26 26 H 1.09007 * 109.47293 * 172.37142 * 1 2 3 27 27 H 1.09005 * 109.47370 * 295.00269 * 4 2 1 28 28 H 1.09004 * 109.46825 * 54.99511 * 4 2 1 29 29 H 0.96999 * 120.00083 * 179.97438 * 8 7 5 30 30 H 1.08997 * 110.86673 * 81.88953 * 14 13 2 31 31 H 1.09003 * 110.67834 * 318.60753 * 14 13 2 32 32 H 1.09001 * 110.72018 * 278.94646 * 15 14 13 33 33 H 1.08995 * 110.72653 * 155.84139 * 15 14 13 34 34 H 1.09003 * 109.47322 * 59.99270 * 19 18 16 35 35 H 1.09000 * 109.47364 * 179.97438 * 19 18 16 36 36 H 1.09004 * 109.47112 * 299.99906 * 19 18 16 37 37 H 1.08997 * 109.47005 * 67.34854 * 20 18 16 38 38 H 1.08995 * 109.47251 * 187.34691 * 20 18 16 39 39 H 1.09007 * 109.47209 * 307.34733 * 20 18 16 40 40 H 1.09000 * 109.47428 * 293.19212 * 23 21 13 41 41 H 1.09005 * 109.46887 * 53.19084 * 23 21 13 42 42 H 1.08995 * 109.47163 * 173.18863 * 23 21 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5419 -0.6148 -1.3128 6 1 4.0790 -0.0860 -0.5393 7 6 4.2304 -1.1934 -2.3578 8 7 3.5765 -1.8377 -3.2995 9 14 6.0921 -1.0620 -2.4362 10 1 6.7001 -2.2147 -1.7241 11 1 6.5297 -1.0702 -3.8553 12 1 6.5267 0.2031 -1.7914 13 7 2.0196 -0.6925 1.1994 14 6 1.3358 -2.0048 1.3741 15 6 1.5579 -2.3166 2.8754 16 6 1.4324 -0.9282 3.5435 17 1 0.4246 -0.7857 3.9336 18 7 2.4215 -0.7893 4.6207 19 6 2.0244 0.2608 5.5680 20 6 2.6312 -2.0690 5.3110 21 6 1.7193 0.0859 2.4206 22 1 0.8439 0.7138 2.2548 23 6 2.9232 0.9523 2.7958 24 1 -0.3634 0.3911 0.9503 25 1 -0.3634 0.6274 -0.8139 26 1 -0.3634 -1.0186 -0.1364 27 1 1.7516 -1.7715 -1.2057 28 1 1.6053 -0.2617 -2.1369 29 1 4.0608 -2.2444 -4.0349 30 1 1.7980 -2.7695 0.7498 31 1 0.2721 -1.9171 1.1528 32 1 2.5509 -2.7353 3.0395 33 1 0.7891 -2.9942 3.2465 34 1 1.0605 0.0068 6.0090 35 1 2.7737 0.3423 6.3553 36 1 1.9439 1.2125 5.0426 37 1 3.1132 -2.7730 4.6327 38 1 3.2661 -1.9118 6.1829 39 1 1.6696 -2.4718 5.6296 40 1 3.7521 0.3117 3.0971 41 1 3.2214 1.5519 1.9357 42 1 2.6539 1.6105 3.6218 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695809431.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:53:36 Heat of formation + Delta-G solvation = 23.262116 kcal Electronic energy + Delta-G solvation = -18746.037395 eV Core-core repulsion = 16147.657952 eV Total energy + Delta-G solvation = -2598.379443 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.66390 -36.68348 -33.36347 -31.81408 -31.15609 -27.98064 -27.35525 -27.23572 -25.48656 -23.19817 -22.79424 -21.28594 -19.11102 -18.48559 -16.26366 -15.97385 -15.63013 -14.86840 -14.66665 -14.34757 -13.87145 -13.52749 -13.26991 -12.65415 -12.53058 -12.27627 -11.97556 -11.89758 -11.67897 -11.58526 -11.25924 -11.05430 -10.93011 -10.78549 -10.72203 -10.51440 -10.35131 -10.21436 -10.09222 -9.81054 -9.09692 -8.92246 -8.19890 -8.16628 -7.42918 -5.81857 -3.78817 3.44974 3.50320 3.55397 3.99836 4.60715 4.63964 4.84776 5.09087 5.16100 5.32630 5.38841 5.49027 5.54092 5.56980 5.61610 5.76262 5.79138 5.84873 5.89130 5.92355 5.98774 6.03063 6.06420 6.14413 6.33369 6.43825 6.52812 6.60800 6.63982 6.77724 6.98185 7.08802 7.13886 7.23468 7.58485 7.73997 7.91871 8.10773 8.20242 8.66689 9.27442 9.82537 11.30346 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.026093 B = 0.006990 C = 0.006381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.841146 B = 4004.850112 C = 4386.922462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.077 3.923 3 H 0.068 0.932 4 C 0.034 3.966 5 C -0.486 4.486 6 H 0.061 0.939 7 C 0.049 3.951 8 N -0.906 5.906 9 Si 0.889 3.111 10 H -0.283 1.283 11 H -0.291 1.291 12 H -0.275 1.275 13 N -0.477 5.477 14 C 0.035 3.965 15 C -0.126 4.126 16 C 0.078 3.922 17 H 0.042 0.958 18 N -0.528 5.528 19 C 0.019 3.981 20 C 0.022 3.978 21 C 0.067 3.933 22 H 0.041 0.959 23 C -0.119 4.119 24 H 0.040 0.960 25 H 0.054 0.946 26 H 0.055 0.945 27 H 0.017 0.983 28 H 0.016 0.984 29 H 0.256 0.744 30 H 0.087 0.913 31 H 0.043 0.957 32 H 0.086 0.914 33 H 0.060 0.940 34 H 0.018 0.982 35 H 0.065 0.935 36 H 0.075 0.925 37 H 0.076 0.924 38 H 0.062 0.938 39 H 0.020 0.980 40 H 0.075 0.925 41 H 0.045 0.955 42 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.808 1.669 15.875 16.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.031 4.031 3 H 0.086 0.914 4 C -0.003 4.003 5 C -0.524 4.524 6 H 0.079 0.921 7 C -0.150 4.150 8 N -0.547 5.547 9 Si 0.718 3.282 10 H -0.210 1.210 11 H -0.217 1.217 12 H -0.200 1.200 13 N -0.200 5.200 14 C -0.093 4.093 15 C -0.164 4.164 16 C -0.031 4.031 17 H 0.060 0.940 18 N -0.252 5.252 19 C -0.129 4.129 20 C -0.126 4.126 21 C -0.043 4.043 22 H 0.059 0.941 23 C -0.176 4.176 24 H 0.059 0.941 25 H 0.073 0.927 26 H 0.074 0.926 27 H 0.035 0.965 28 H 0.035 0.965 29 H 0.066 0.934 30 H 0.105 0.895 31 H 0.062 0.938 32 H 0.105 0.895 33 H 0.079 0.921 34 H 0.037 0.963 35 H 0.083 0.917 36 H 0.093 0.907 37 H 0.094 0.906 38 H 0.080 0.920 39 H 0.039 0.961 40 H 0.094 0.906 41 H 0.064 0.936 42 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -4.759 1.665 15.434 16.237 hybrid contribution -0.738 -0.128 0.319 0.814 sum -5.497 1.537 15.753 16.755 Atomic orbital electron populations 1.22543 1.00006 1.01497 1.00293 1.22049 0.89885 0.98568 0.92596 0.91352 1.19119 0.96352 0.95222 0.89644 1.21188 0.91809 1.32651 1.06773 0.92082 1.24999 0.97941 0.95990 0.96036 1.69967 1.35122 1.37212 1.12436 0.86633 0.86562 0.78378 0.76613 1.20955 1.21729 1.20012 1.65056 1.53093 1.01609 1.00270 1.23284 0.97154 0.94067 0.94777 1.22797 1.02441 0.95218 0.95961 1.22573 0.92130 0.96480 0.91881 0.94007 1.62079 1.45667 1.06353 1.11080 1.22592 0.98383 0.96240 0.95691 1.22455 0.99631 0.91951 0.98561 1.22402 0.97208 0.94444 0.90208 0.94102 1.21611 0.98629 0.98334 0.99052 0.94139 0.92690 0.92600 0.96497 0.96545 0.93435 0.89497 0.93850 0.89540 0.92149 0.96344 0.91661 0.90654 0.90575 0.91963 0.96098 0.90644 0.93578 0.93858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.24 8.17 37.16 0.30 -2.94 16 2 C 0.08 1.62 2.22 -67.71 -0.15 1.47 16 3 H 0.07 1.48 8.10 -51.93 -0.42 1.06 16 4 C 0.03 0.87 4.46 -27.89 -0.12 0.75 16 5 C -0.49 -13.89 8.84 -34.44 -0.30 -14.20 16 6 H 0.06 1.76 7.74 -52.49 -0.41 1.35 16 7 C 0.05 1.44 5.46 -17.82 -0.10 1.35 16 8 N -0.91 -27.75 13.29 55.43 0.74 -27.02 16 9 Si 0.89 22.56 29.54 -169.99 -5.02 17.54 16 10 H -0.28 -7.14 7.11 56.52 0.40 -6.74 16 11 H -0.29 -7.32 7.11 56.52 0.40 -6.91 16 12 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 13 N -0.48 -9.29 4.59 -214.27 -0.98 -10.28 16 14 C 0.04 0.62 5.59 -1.63 -0.01 0.61 16 15 C -0.13 -1.83 5.59 -24.87 -0.14 -1.97 16 16 C 0.08 1.11 2.91 -66.36 -0.19 0.91 16 17 H 0.04 0.57 7.88 -51.92 -0.41 0.16 16 18 N -0.53 -6.83 3.24 -241.53 -0.78 -7.61 16 19 C 0.02 0.20 8.99 60.06 0.54 0.74 16 20 C 0.02 0.25 8.68 60.07 0.52 0.77 16 21 C 0.07 1.09 2.81 -66.65 -0.19 0.90 16 22 H 0.04 0.66 6.03 -51.93 -0.31 0.35 16 23 C -0.12 -1.91 8.41 37.15 0.31 -1.60 16 24 H 0.04 0.63 6.29 -51.93 -0.33 0.31 16 25 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 26 H 0.06 0.98 6.40 -51.93 -0.33 0.64 16 27 H 0.02 0.46 7.11 -51.93 -0.37 0.09 16 28 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 30 H 0.09 1.72 7.66 -51.93 -0.40 1.32 16 31 H 0.04 0.73 5.47 -51.93 -0.28 0.44 16 32 H 0.09 1.31 6.04 -51.93 -0.31 1.00 16 33 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.02 0.18 8.08 -51.93 -0.42 -0.24 16 35 H 0.06 0.62 8.04 -51.93 -0.42 0.20 16 36 H 0.07 0.82 5.60 -51.93 -0.29 0.52 16 37 H 0.08 0.89 6.12 -51.93 -0.32 0.57 16 38 H 0.06 0.61 7.99 -51.93 -0.41 0.19 16 39 H 0.02 0.22 8.11 -51.93 -0.42 -0.21 16 40 H 0.07 1.31 7.32 -51.93 -0.38 0.93 16 41 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 42 H 0.04 0.59 5.55 -51.93 -0.29 0.30 16 LS Contribution 310.51 15.07 4.68 4.68 Total: -1.00 -30.37 310.51 -8.25 -38.62 By element: Atomic # 1 Polarization: 4.61 SS G_CDS: -7.35 Total: -2.74 kcal Atomic # 6 Polarization: -13.68 SS G_CDS: 0.47 Total: -13.20 kcal Atomic # 7 Polarization: -43.87 SS G_CDS: -1.03 Total: -44.90 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -5.02 Total: 17.54 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -30.37 -8.25 -38.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695809431.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.884 kcal (2) G-P(sol) polarization free energy of solvation -30.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.622 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds