Wall clock time and date at job start Mon Mar 30 2020 17:53:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47094 * 2 1 4 4 C 1.52999 * 109.47167 * 240.00071 * 2 1 3 5 5 C 1.50697 * 109.47215 * 174.99522 * 4 2 1 6 6 H 1.08000 * 119.99913 * 0.02562 * 5 4 2 7 7 C 1.37878 * 120.00194 * 179.97438 * 5 4 2 8 8 N 1.31511 * 119.99842 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 120.00043 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.47016 * 90.00447 * 9 7 5 11 11 H 1.48502 * 109.47285 * 210.00198 * 9 7 5 12 12 H 1.48498 * 109.47279 * 330.00775 * 9 7 5 13 13 N 1.46898 * 109.46802 * 119.99986 * 2 1 3 14 14 C 1.49006 * 110.97398 * 48.94612 * 13 2 1 15 15 C 1.54937 * 103.00367 * 200.29757 * 14 13 2 16 16 C 1.54589 * 103.08364 * 37.39122 * 15 14 13 17 17 H 1.09007 * 110.31112 * 96.87305 * 16 15 14 18 18 N 1.46902 * 110.31066 * 219.04158 * 16 15 14 19 19 C 1.46900 * 111.00171 * 200.83015 * 18 16 15 20 20 C 1.46903 * 110.99740 * 324.77832 * 18 16 15 21 21 C 1.47898 * 111.00277 * 291.49236 * 13 2 1 22 22 H 1.09003 * 109.91462 * 26.49850 * 21 13 2 23 23 C 1.52994 * 109.92292 * 265.20170 * 21 13 2 24 24 H 1.08998 * 109.47431 * 292.36784 * 1 2 3 25 25 H 1.09003 * 109.47508 * 52.37094 * 1 2 3 26 26 H 1.09007 * 109.47293 * 172.37142 * 1 2 3 27 27 H 1.09005 * 109.47370 * 295.00269 * 4 2 1 28 28 H 1.09004 * 109.46825 * 54.99511 * 4 2 1 29 29 H 0.96999 * 120.00083 * 179.97438 * 8 7 5 30 30 H 1.08997 * 110.86673 * 81.88953 * 14 13 2 31 31 H 1.09003 * 110.67834 * 318.60753 * 14 13 2 32 32 H 1.09001 * 110.72018 * 278.94646 * 15 14 13 33 33 H 1.08995 * 110.72653 * 155.84139 * 15 14 13 34 34 H 1.09003 * 109.47322 * 59.99270 * 19 18 16 35 35 H 1.09000 * 109.47364 * 179.97438 * 19 18 16 36 36 H 1.09004 * 109.47112 * 299.99906 * 19 18 16 37 37 H 1.08997 * 109.47005 * 67.34854 * 20 18 16 38 38 H 1.08995 * 109.47251 * 187.34691 * 20 18 16 39 39 H 1.09007 * 109.47209 * 307.34733 * 20 18 16 40 40 H 1.09000 * 109.47428 * 293.19212 * 23 21 13 41 41 H 1.09005 * 109.46887 * 53.19084 * 23 21 13 42 42 H 1.08995 * 109.47163 * 173.18863 * 23 21 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5419 -0.6148 -1.3128 6 1 4.0790 -0.0860 -0.5393 7 6 4.2304 -1.1934 -2.3578 8 7 3.5765 -1.8377 -3.2995 9 14 6.0921 -1.0620 -2.4362 10 1 6.7001 -2.2147 -1.7241 11 1 6.5297 -1.0702 -3.8553 12 1 6.5267 0.2031 -1.7914 13 7 2.0196 -0.6925 1.1994 14 6 1.3358 -2.0048 1.3741 15 6 1.5579 -2.3166 2.8754 16 6 1.4324 -0.9282 3.5435 17 1 0.4246 -0.7857 3.9336 18 7 2.4215 -0.7893 4.6207 19 6 2.0244 0.2608 5.5680 20 6 2.6312 -2.0690 5.3110 21 6 1.7193 0.0859 2.4206 22 1 0.8439 0.7138 2.2548 23 6 2.9232 0.9523 2.7958 24 1 -0.3634 0.3911 0.9503 25 1 -0.3634 0.6274 -0.8139 26 1 -0.3634 -1.0186 -0.1364 27 1 1.7516 -1.7715 -1.2057 28 1 1.6053 -0.2617 -2.1369 29 1 4.0608 -2.2444 -4.0349 30 1 1.7980 -2.7695 0.7498 31 1 0.2721 -1.9171 1.1528 32 1 2.5509 -2.7353 3.0395 33 1 0.7891 -2.9942 3.2465 34 1 1.0605 0.0068 6.0090 35 1 2.7737 0.3423 6.3553 36 1 1.9439 1.2125 5.0426 37 1 3.1132 -2.7730 4.6327 38 1 3.2661 -1.9118 6.1829 39 1 1.6696 -2.4718 5.6296 40 1 3.7521 0.3117 3.0971 41 1 3.2214 1.5519 1.9357 42 1 2.6539 1.6105 3.6218 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695809431.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:53:35 Heat of formation + Delta-G solvation = 3.715168 kcal Electronic energy + Delta-G solvation = -18746.885014 eV Core-core repulsion = 16147.657952 eV Total energy + Delta-G solvation = -2599.227062 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.94229 -37.94259 -35.21107 -33.59829 -32.42014 -29.61995 -28.94017 -28.24472 -26.70317 -25.18506 -23.87459 -22.80406 -20.41294 -19.92194 -18.34705 -17.41345 -16.86030 -16.43681 -16.01868 -15.65028 -15.16134 -14.91916 -14.76737 -14.07260 -13.97966 -13.51772 -13.44822 -13.21743 -13.14381 -12.96254 -12.73571 -12.62206 -12.43607 -12.39139 -12.16247 -11.96747 -11.83357 -11.68717 -11.52409 -11.29052 -11.09635 -10.98312 -10.46952 -9.11675 -8.89356 -8.08754 -6.12976 1.41385 1.42853 1.53790 2.48441 3.04181 3.19024 3.30380 3.67128 3.84543 4.19481 4.22591 4.31793 4.38166 4.47591 4.50901 4.52320 4.58851 4.60825 4.71863 4.76665 4.85168 4.86267 4.94093 4.98762 5.02619 5.11724 5.20277 5.22885 5.27860 5.33834 5.35385 5.50553 5.73297 5.73676 5.90857 6.19728 6.22821 6.34751 6.41999 6.59337 7.00565 7.52520 9.03434 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.026093 B = 0.006990 C = 0.006381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.841146 B = 4004.850112 C = 4386.922462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.087 3.913 3 H 0.057 0.943 4 C 0.041 3.959 5 C -0.496 4.496 6 H 0.055 0.945 7 C -0.005 4.005 8 N -0.941 5.941 9 Si 0.955 3.045 10 H -0.278 1.278 11 H -0.285 1.285 12 H -0.267 1.267 13 N -0.504 5.504 14 C 0.034 3.966 15 C -0.116 4.116 16 C 0.087 3.913 17 H 0.059 0.941 18 N -0.547 5.547 19 C 0.020 3.980 20 C 0.023 3.977 21 C 0.066 3.934 22 H 0.049 0.951 23 C -0.110 4.110 24 H 0.066 0.934 25 H 0.057 0.943 26 H 0.054 0.946 27 H -0.007 1.007 28 H -0.010 1.010 29 H 0.258 0.742 30 H 0.053 0.947 31 H 0.054 0.946 32 H 0.077 0.923 33 H 0.086 0.914 34 H 0.029 0.971 35 H 0.077 0.923 36 H 0.072 0.928 37 H 0.065 0.935 38 H 0.076 0.924 39 H 0.031 0.969 40 H 0.059 0.941 41 H 0.022 0.978 42 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.032 2.124 18.174 19.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.022 4.022 3 H 0.076 0.924 4 C 0.004 3.996 5 C -0.535 4.535 6 H 0.073 0.927 7 C -0.201 4.201 8 N -0.583 5.583 9 Si 0.782 3.218 10 H -0.204 1.204 11 H -0.210 1.210 12 H -0.192 1.192 13 N -0.228 5.228 14 C -0.094 4.094 15 C -0.154 4.154 16 C -0.022 4.022 17 H 0.076 0.924 18 N -0.271 5.271 19 C -0.127 4.127 20 C -0.124 4.124 21 C -0.043 4.043 22 H 0.066 0.934 23 C -0.168 4.168 24 H 0.085 0.915 25 H 0.076 0.924 26 H 0.073 0.927 27 H 0.011 0.989 28 H 0.008 0.992 29 H 0.067 0.933 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.095 0.905 33 H 0.105 0.895 34 H 0.047 0.953 35 H 0.096 0.904 36 H 0.091 0.909 37 H 0.083 0.917 38 H 0.094 0.906 39 H 0.050 0.950 40 H 0.078 0.922 41 H 0.041 0.959 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -4.984 2.126 17.754 18.562 hybrid contribution -0.664 -0.270 -0.385 0.813 sum -5.647 1.856 17.369 18.359 Atomic orbital electron populations 1.22394 0.97200 1.01747 1.01873 1.21700 0.92077 0.97104 0.91329 0.92425 1.18958 0.95163 0.94112 0.91371 1.21472 0.93315 1.32222 1.06471 0.92717 1.25835 1.02816 0.95704 0.95739 1.70091 1.37004 1.38135 1.13084 0.85587 0.80766 0.78621 0.76874 1.20423 1.21027 1.19190 1.64906 1.54235 1.02703 1.00958 1.23238 0.97135 0.92454 0.96604 1.22728 1.02841 0.96261 0.93548 1.22433 0.93276 0.94853 0.91607 0.92356 1.62017 1.45554 1.07703 1.11785 1.22611 0.99365 0.95283 0.95483 1.22451 1.00391 0.90979 0.98600 1.22471 0.97406 0.94845 0.89610 0.93362 1.21546 0.98144 0.98123 0.98985 0.91530 0.92353 0.92709 0.98865 0.99166 0.93300 0.92885 0.92787 0.90485 0.89531 0.95268 0.90418 0.90915 0.91662 0.90565 0.95008 0.92189 0.95873 0.91099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.93 8.17 71.98 0.59 -5.35 16 2 C 0.09 3.67 2.22 44.92 0.10 3.77 16 3 H 0.06 2.53 8.10 -2.39 -0.02 2.51 16 4 C 0.04 2.22 4.46 29.85 0.13 2.35 16 5 C -0.50 -29.20 8.84 25.60 0.23 -28.97 16 6 H 0.05 3.22 7.74 -2.91 -0.02 3.20 16 7 C -0.01 -0.31 5.46 84.66 0.46 0.15 16 8 N -0.94 -59.03 13.29 21.45 0.28 -58.74 16 9 Si 0.96 46.91 29.54 68.60 2.03 48.93 16 10 H -0.28 -13.38 7.11 99.48 0.71 -12.67 16 11 H -0.28 -13.59 7.11 99.48 0.71 -12.89 16 12 H -0.27 -12.69 7.11 99.48 0.71 -11.98 16 13 N -0.50 -19.64 4.59 -831.81 -3.82 -23.46 16 14 C 0.03 1.18 5.59 86.56 0.48 1.67 16 15 C -0.12 -3.16 5.59 31.80 0.18 -2.99 16 16 C 0.09 2.23 2.91 45.79 0.13 2.37 16 17 H 0.06 1.33 7.88 -2.38 -0.02 1.32 16 18 N -0.55 -12.62 3.24 -918.05 -2.97 -15.59 16 19 C 0.02 0.36 8.99 127.69 1.15 1.51 16 20 C 0.02 0.46 8.68 127.69 1.11 1.57 16 21 C 0.07 2.03 2.81 45.06 0.13 2.16 16 22 H 0.05 1.43 6.03 -2.39 -0.01 1.42 16 23 C -0.11 -3.42 8.41 71.98 0.61 -2.81 16 24 H 0.07 1.93 6.29 -2.39 -0.02 1.91 16 25 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 26 H 0.05 1.88 6.40 -2.38 -0.02 1.86 16 27 H -0.01 -0.41 7.11 -2.38 -0.02 -0.42 16 28 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 29 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 30 H 0.05 2.19 7.66 -2.39 -0.02 2.17 16 31 H 0.05 1.76 5.47 -2.39 -0.01 1.75 16 32 H 0.08 2.26 6.04 -2.39 -0.01 2.25 16 33 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 34 H 0.03 0.47 8.08 -2.39 -0.02 0.45 16 35 H 0.08 1.20 8.04 -2.39 -0.02 1.19 16 36 H 0.07 1.33 5.60 -2.39 -0.01 1.32 16 37 H 0.06 1.41 6.12 -2.39 -0.01 1.39 16 38 H 0.08 1.26 7.99 -2.39 -0.02 1.24 16 39 H 0.03 0.55 8.11 -2.38 -0.02 0.53 16 40 H 0.06 2.04 7.32 -2.39 -0.02 2.02 16 41 H 0.02 0.79 8.14 -2.38 -0.02 0.77 16 42 H 0.07 1.77 5.55 -2.39 -0.01 1.76 16 Total: -1.00 -66.35 310.51 1.78 -64.57 By element: Atomic # 1 Polarization: 7.90 SS G_CDS: 0.97 Total: 8.87 kcal Atomic # 6 Polarization: -29.87 SS G_CDS: 5.29 Total: -24.58 kcal Atomic # 7 Polarization: -91.28 SS G_CDS: -6.51 Total: -97.79 kcal Atomic # 14 Polarization: 46.91 SS G_CDS: 2.03 Total: 48.93 kcal Total: -66.35 1.78 -64.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695809431.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.280 kcal (2) G-P(sol) polarization free energy of solvation -66.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.565 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds