Wall clock time and date at job start Mon Mar 30 2020 17:53:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.47526 * 2 1 4 4 C 1.53007 * 109.47154 * 239.99958 * 2 1 3 5 5 C 1.50699 * 109.46908 * 179.56486 * 4 2 1 6 6 H 1.07998 * 120.00261 * 355.81572 * 5 4 2 7 7 C 1.37883 * 119.99594 * 175.81648 * 5 4 2 8 8 N 1.31514 * 120.00192 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 119.99829 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.47272 * 89.99883 * 9 7 5 11 11 H 1.48500 * 109.47085 * 209.99882 * 9 7 5 12 12 H 1.48498 * 109.47302 * 329.99984 * 9 7 5 13 13 N 1.46899 * 109.47136 * 120.00196 * 2 1 3 14 14 C 1.48531 * 110.99907 * 295.49459 * 13 2 1 15 15 C 1.54937 * 103.22988 * 159.72151 * 14 13 2 16 16 C 1.54592 * 102.91883 * 322.58721 * 15 14 13 17 17 H 1.09001 * 110.30946 * 262.94109 * 16 15 14 18 18 N 1.46898 * 110.30970 * 140.87254 * 16 15 14 19 19 C 1.46900 * 110.99941 * 40.53924 * 18 16 15 20 20 C 1.46908 * 111.00134 * 164.48711 * 18 16 15 21 21 C 1.47899 * 111.00036 * 52.88786 * 13 2 1 22 22 H 1.08996 * 109.91967 * 333.51337 * 21 13 2 23 23 C 1.53006 * 109.91436 * 94.80527 * 21 13 2 24 24 H 1.09003 * 109.46948 * 293.07370 * 1 2 3 25 25 H 1.09002 * 109.47003 * 53.07265 * 1 2 3 26 26 H 1.08998 * 109.47228 * 173.07047 * 1 2 3 27 27 H 1.08996 * 109.46689 * 299.56524 * 4 2 1 28 28 H 1.09000 * 109.46657 * 59.56431 * 4 2 1 29 29 H 0.96997 * 120.00314 * 180.02562 * 8 7 5 30 30 H 1.09004 * 110.66932 * 278.15871 * 14 13 2 31 31 H 1.09001 * 110.66577 * 41.11485 * 14 13 2 32 32 H 1.08994 * 110.72241 * 80.94122 * 15 14 13 33 33 H 1.08996 * 110.72461 * 204.22811 * 15 14 13 34 34 H 1.08993 * 109.47286 * 51.80315 * 19 18 16 35 35 H 1.09000 * 109.47024 * 171.81359 * 19 18 16 36 36 H 1.09004 * 109.46926 * 291.80706 * 19 18 16 37 37 H 1.08998 * 109.46918 * 52.87238 * 20 18 16 38 38 H 1.09001 * 109.47018 * 172.87186 * 20 18 16 39 39 H 1.09002 * 109.47000 * 292.87495 * 20 18 16 40 40 H 1.08999 * 109.47153 * 76.08092 * 23 21 13 41 41 H 1.08997 * 109.46860 * 196.07595 * 23 21 13 42 42 H 1.08997 * 109.47266 * 316.07490 * 23 21 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2493 5 6 3.5470 -0.7119 -1.2546 6 1 4.0865 -0.1811 -0.4842 7 6 4.2370 -1.3811 -2.2432 8 7 3.5801 -2.0270 -3.1817 9 14 6.1049 -1.3689 -2.2503 10 1 6.6105 -2.5216 -1.4624 11 1 6.5953 -1.4717 -3.6483 12 1 6.5940 -0.1037 -1.6460 13 7 2.0197 -0.6925 1.1994 14 6 1.6344 0.0410 2.4321 15 6 1.7436 -1.0400 3.5367 16 6 1.2310 -2.3135 2.8259 17 1 0.1790 -2.4791 3.0582 18 7 2.0305 -3.4785 3.2277 19 6 2.3346 -3.4381 4.6644 20 6 1.3529 -4.7314 2.8682 21 6 1.4109 -2.0348 1.3221 22 1 0.4420 -2.0502 0.8230 23 6 2.3362 -3.0852 0.7044 24 1 -0.3633 0.4028 0.9455 25 1 -0.3633 0.6174 -0.8215 26 1 -0.3633 -1.0201 -0.1240 27 1 1.6831 -1.7511 -1.2453 28 1 1.6703 -0.2119 -2.1392 29 1 4.0654 -2.4981 -3.8770 30 1 2.3276 0.8597 2.6252 31 1 0.6130 0.4137 2.3546 32 1 2.7791 -1.1651 3.8529 33 1 1.1075 -0.7896 4.3857 34 1 1.4125 -3.2930 5.2270 35 1 2.7992 -4.3775 4.9640 36 1 3.0180 -2.6136 4.8680 37 1 1.0890 -4.7113 1.8109 38 1 2.0187 -5.5727 3.0605 39 1 0.4482 -4.8398 3.4665 40 1 3.1675 -3.2806 1.3818 41 1 1.7791 -4.0071 0.5376 42 1 2.7212 -2.7163 -0.2463 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695809435.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:53:39 Heat of formation + Delta-G solvation = 30.043568 kcal Electronic energy + Delta-G solvation = -19072.560414 eV Core-core repulsion = 16474.475038 eV Total energy + Delta-G solvation = -2598.085377 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.66726 -36.60894 -33.42207 -31.82462 -30.80662 -28.20920 -27.30654 -27.01030 -25.24168 -23.14043 -22.70542 -20.81973 -19.78064 -17.97490 -16.44010 -16.04578 -15.51202 -14.58186 -14.52947 -14.23640 -13.94131 -13.34810 -13.24707 -12.71481 -12.34377 -12.20252 -11.92266 -11.76868 -11.65273 -11.46158 -11.13418 -10.96715 -10.79992 -10.77207 -10.56161 -10.50967 -10.31835 -10.25025 -9.82839 -9.35099 -8.98494 -8.88697 -8.18008 -8.01350 -7.39427 -5.81120 -3.77364 3.46198 3.51774 3.56196 4.13574 4.62995 4.68604 4.94084 5.11903 5.28950 5.43012 5.46497 5.55449 5.56802 5.61670 5.70260 5.80145 5.87534 5.93904 5.98178 6.02284 6.05753 6.07529 6.12622 6.27363 6.35287 6.52009 6.61113 6.69315 6.85758 7.05646 7.24062 7.25946 7.39173 7.56429 7.67110 7.94806 7.99994 8.11399 8.21737 8.66960 9.28283 9.83171 11.30562 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.022481 B = 0.008418 C = 0.007322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.180646 B = 3325.284440 C = 3823.279323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.076 3.924 3 H 0.067 0.933 4 C 0.026 3.974 5 C -0.480 4.480 6 H 0.060 0.940 7 C 0.051 3.949 8 N -0.904 5.904 9 Si 0.887 3.113 10 H -0.282 1.282 11 H -0.292 1.292 12 H -0.276 1.276 13 N -0.476 5.476 14 C 0.026 3.974 15 C -0.120 4.120 16 C 0.075 3.925 17 H 0.038 0.962 18 N -0.524 5.524 19 C 0.023 3.977 20 C 0.016 3.984 21 C 0.078 3.922 22 H 0.048 0.952 23 C -0.145 4.145 24 H 0.042 0.958 25 H 0.054 0.946 26 H 0.055 0.945 27 H 0.029 0.971 28 H 0.012 0.988 29 H 0.256 0.744 30 H 0.074 0.926 31 H 0.038 0.962 32 H 0.084 0.916 33 H 0.058 0.942 34 H 0.018 0.982 35 H 0.061 0.939 36 H 0.071 0.929 37 H 0.081 0.919 38 H 0.065 0.935 39 H 0.015 0.985 40 H 0.069 0.931 41 H 0.030 0.970 42 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.239 -1.268 13.337 14.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.032 4.032 3 H 0.086 0.914 4 C -0.011 4.011 5 C -0.519 4.519 6 H 0.079 0.921 7 C -0.148 4.148 8 N -0.545 5.545 9 Si 0.716 3.284 10 H -0.208 1.208 11 H -0.218 1.218 12 H -0.201 1.201 13 N -0.199 5.199 14 C -0.102 4.102 15 C -0.158 4.158 16 C -0.034 4.034 17 H 0.056 0.944 18 N -0.248 5.248 19 C -0.125 4.125 20 C -0.132 4.132 21 C -0.031 4.031 22 H 0.065 0.935 23 C -0.202 4.202 24 H 0.061 0.939 25 H 0.073 0.927 26 H 0.074 0.926 27 H 0.047 0.953 28 H 0.030 0.970 29 H 0.066 0.934 30 H 0.093 0.907 31 H 0.056 0.944 32 H 0.103 0.897 33 H 0.077 0.923 34 H 0.037 0.963 35 H 0.080 0.920 36 H 0.090 0.910 37 H 0.100 0.900 38 H 0.083 0.917 39 H 0.034 0.966 40 H 0.088 0.912 41 H 0.048 0.952 42 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -5.188 -1.388 12.868 13.943 hybrid contribution -0.753 -0.057 0.490 0.900 sum -5.941 -1.445 13.358 14.691 Atomic orbital electron populations 1.22561 1.00139 1.01435 1.00454 1.22026 0.89874 0.98474 0.92874 0.91432 1.19308 0.96482 0.95802 0.89496 1.21108 0.91233 1.30407 1.09165 0.92137 1.24966 0.97758 0.96131 0.95910 1.69964 1.34928 1.34930 1.14726 0.86674 0.86835 0.78343 0.76591 1.20842 1.21829 1.20133 1.64973 1.53956 1.00735 1.00281 1.23239 0.98737 0.96829 0.91412 1.22673 1.02082 0.94092 0.96966 1.22611 0.93696 0.90128 0.96942 0.94432 1.62104 1.45441 1.01851 1.15378 1.22423 0.99622 1.02365 0.88108 1.22649 0.96407 0.91858 1.02237 1.22344 0.96971 0.91633 0.92178 0.93462 1.22103 0.99282 0.94775 1.04057 0.93891 0.92680 0.92650 0.95274 0.97003 0.93442 0.90711 0.94379 0.89703 0.92305 0.96339 0.91980 0.91030 0.90009 0.91658 0.96610 0.91206 0.95167 0.87968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.28 8.46 37.16 0.31 -2.96 16 2 C 0.08 1.57 2.36 -67.71 -0.16 1.41 16 3 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 4 C 0.03 0.66 3.93 -27.88 -0.11 0.55 16 5 C -0.48 -13.35 7.33 -34.44 -0.25 -13.61 16 6 H 0.06 1.71 7.74 -52.49 -0.41 1.31 16 7 C 0.05 1.47 5.46 -17.82 -0.10 1.37 16 8 N -0.90 -27.04 13.29 55.43 0.74 -26.30 16 9 Si 0.89 22.31 29.54 -169.99 -5.02 17.28 16 10 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 11 H -0.29 -7.32 7.11 56.52 0.40 -6.91 16 12 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 13 N -0.48 -9.31 4.51 -214.67 -0.97 -10.28 16 14 C 0.03 0.42 6.41 -1.90 -0.01 0.41 16 15 C -0.12 -1.70 5.59 -24.87 -0.14 -1.84 16 16 C 0.08 1.15 2.82 -66.36 -0.19 0.97 16 17 H 0.04 0.56 8.00 -51.93 -0.42 0.14 16 18 N -0.52 -7.68 3.14 -241.53 -0.76 -8.44 16 19 C 0.02 0.28 8.80 60.06 0.53 0.80 16 20 C 0.02 0.22 8.86 60.07 0.53 0.75 16 21 C 0.08 1.43 2.29 -66.64 -0.15 1.28 16 22 H 0.05 0.89 5.20 -51.93 -0.27 0.62 16 23 C -0.15 -2.99 7.76 37.16 0.29 -2.70 16 24 H 0.04 0.67 5.99 -51.93 -0.31 0.36 16 25 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 26 H 0.05 0.98 6.11 -51.93 -0.32 0.67 16 27 H 0.03 0.78 5.76 -51.93 -0.30 0.48 16 28 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 30 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 31 H 0.04 0.57 5.85 -51.93 -0.30 0.27 16 32 H 0.08 1.25 6.38 -51.93 -0.33 0.91 16 33 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.02 0.20 8.10 -51.93 -0.42 -0.22 16 35 H 0.06 0.67 8.05 -51.93 -0.42 0.25 16 36 H 0.07 0.85 6.30 -51.93 -0.33 0.52 16 37 H 0.08 1.16 5.21 -51.93 -0.27 0.89 16 38 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.02 0.19 8.14 -51.93 -0.42 -0.24 16 40 H 0.07 1.47 6.81 -51.93 -0.35 1.11 16 41 H 0.03 0.56 5.86 -51.93 -0.30 0.26 16 42 H 0.10 2.56 4.23 -51.93 -0.22 2.34 16 LS Contribution 302.75 15.07 4.56 4.56 Total: -1.00 -29.38 302.75 -7.96 -37.34 By element: Atomic # 1 Polarization: 6.46 SS G_CDS: -7.06 Total: -0.60 kcal Atomic # 6 Polarization: -14.12 SS G_CDS: 0.55 Total: -13.57 kcal Atomic # 7 Polarization: -44.02 SS G_CDS: -0.99 Total: -45.01 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -29.38 -7.96 -37.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695809435.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.384 kcal (2) G-P(sol) polarization free energy of solvation -29.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.340 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds