Wall clock time and date at job start Mon Mar 30 2020 17:53:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.47526 * 2 1 4 4 C 1.53007 * 109.47154 * 239.99958 * 2 1 3 5 5 C 1.50699 * 109.46908 * 179.56486 * 4 2 1 6 6 H 1.07998 * 120.00261 * 355.81572 * 5 4 2 7 7 C 1.37883 * 119.99594 * 175.81648 * 5 4 2 8 8 N 1.31514 * 120.00192 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 119.99829 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.47272 * 89.99883 * 9 7 5 11 11 H 1.48500 * 109.47085 * 209.99882 * 9 7 5 12 12 H 1.48498 * 109.47302 * 329.99984 * 9 7 5 13 13 N 1.46899 * 109.47136 * 120.00196 * 2 1 3 14 14 C 1.48531 * 110.99907 * 295.49459 * 13 2 1 15 15 C 1.54937 * 103.22988 * 159.72151 * 14 13 2 16 16 C 1.54592 * 102.91883 * 322.58721 * 15 14 13 17 17 H 1.09001 * 110.30946 * 262.94109 * 16 15 14 18 18 N 1.46898 * 110.30970 * 140.87254 * 16 15 14 19 19 C 1.46900 * 110.99941 * 40.53924 * 18 16 15 20 20 C 1.46908 * 111.00134 * 164.48711 * 18 16 15 21 21 C 1.47899 * 111.00036 * 52.88786 * 13 2 1 22 22 H 1.08996 * 109.91967 * 333.51337 * 21 13 2 23 23 C 1.53006 * 109.91436 * 94.80527 * 21 13 2 24 24 H 1.09003 * 109.46948 * 293.07370 * 1 2 3 25 25 H 1.09002 * 109.47003 * 53.07265 * 1 2 3 26 26 H 1.08998 * 109.47228 * 173.07047 * 1 2 3 27 27 H 1.08996 * 109.46689 * 299.56524 * 4 2 1 28 28 H 1.09000 * 109.46657 * 59.56431 * 4 2 1 29 29 H 0.96997 * 120.00314 * 180.02562 * 8 7 5 30 30 H 1.09004 * 110.66932 * 278.15871 * 14 13 2 31 31 H 1.09001 * 110.66577 * 41.11485 * 14 13 2 32 32 H 1.08994 * 110.72241 * 80.94122 * 15 14 13 33 33 H 1.08996 * 110.72461 * 204.22811 * 15 14 13 34 34 H 1.08993 * 109.47286 * 51.80315 * 19 18 16 35 35 H 1.09000 * 109.47024 * 171.81359 * 19 18 16 36 36 H 1.09004 * 109.46926 * 291.80706 * 19 18 16 37 37 H 1.08998 * 109.46918 * 52.87238 * 20 18 16 38 38 H 1.09001 * 109.47018 * 172.87186 * 20 18 16 39 39 H 1.09002 * 109.47000 * 292.87495 * 20 18 16 40 40 H 1.08999 * 109.47153 * 76.08092 * 23 21 13 41 41 H 1.08997 * 109.46860 * 196.07595 * 23 21 13 42 42 H 1.08997 * 109.47266 * 316.07490 * 23 21 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2493 5 6 3.5470 -0.7119 -1.2546 6 1 4.0865 -0.1811 -0.4842 7 6 4.2370 -1.3811 -2.2432 8 7 3.5801 -2.0270 -3.1817 9 14 6.1049 -1.3689 -2.2503 10 1 6.6105 -2.5216 -1.4624 11 1 6.5953 -1.4717 -3.6483 12 1 6.5940 -0.1037 -1.6460 13 7 2.0197 -0.6925 1.1994 14 6 1.6344 0.0410 2.4321 15 6 1.7436 -1.0400 3.5367 16 6 1.2310 -2.3135 2.8259 17 1 0.1790 -2.4791 3.0582 18 7 2.0305 -3.4785 3.2277 19 6 2.3346 -3.4381 4.6644 20 6 1.3529 -4.7314 2.8682 21 6 1.4109 -2.0348 1.3221 22 1 0.4420 -2.0502 0.8230 23 6 2.3362 -3.0852 0.7044 24 1 -0.3633 0.4028 0.9455 25 1 -0.3633 0.6174 -0.8215 26 1 -0.3633 -1.0201 -0.1240 27 1 1.6831 -1.7511 -1.2453 28 1 1.6703 -0.2119 -2.1392 29 1 4.0654 -2.4981 -3.8770 30 1 2.3276 0.8597 2.6252 31 1 0.6130 0.4137 2.3546 32 1 2.7791 -1.1651 3.8529 33 1 1.1075 -0.7896 4.3857 34 1 1.4125 -3.2930 5.2270 35 1 2.7992 -4.3775 4.9640 36 1 3.0180 -2.6136 4.8680 37 1 1.0890 -4.7113 1.8109 38 1 2.0187 -5.5727 3.0605 39 1 0.4482 -4.8398 3.4665 40 1 3.1675 -3.2806 1.3818 41 1 1.7791 -4.0071 0.5376 42 1 2.7212 -2.7163 -0.2463 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695809435.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:53:38 Heat of formation + Delta-G solvation = 11.231380 kcal Electronic energy + Delta-G solvation = -19073.376172 eV Core-core repulsion = 16474.475038 eV Total energy + Delta-G solvation = -2598.901134 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.00922 -37.90854 -35.22054 -33.59437 -32.22751 -29.79247 -28.94638 -28.10920 -26.57775 -25.11845 -23.89567 -22.36590 -21.08903 -19.45428 -18.24055 -17.80897 -16.69634 -16.45506 -15.66076 -15.60757 -15.24945 -14.89792 -14.73975 -14.12348 -13.91360 -13.57830 -13.42912 -13.23254 -13.02545 -12.85838 -12.70415 -12.47769 -12.41307 -12.30282 -12.20162 -11.99608 -11.92310 -11.51387 -11.42716 -11.10365 -11.00282 -10.76397 -10.40367 -9.08808 -8.84965 -8.02807 -6.04533 1.43288 1.45253 1.54489 2.52091 3.07137 3.25178 3.36190 3.73496 3.86956 4.19477 4.25614 4.32576 4.44103 4.47598 4.51097 4.57549 4.62088 4.63990 4.73513 4.77656 4.90191 4.92141 5.00817 5.04806 5.06928 5.10218 5.18908 5.25750 5.32559 5.40324 5.54982 5.60980 5.77260 5.92425 6.09272 6.22859 6.27619 6.41826 6.47780 6.63304 7.07208 7.59231 9.08975 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.022481 B = 0.008418 C = 0.007322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.180646 B = 3325.284440 C = 3823.279323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.083 3.917 3 H 0.062 0.938 4 C 0.034 3.966 5 C -0.481 4.481 6 H 0.053 0.947 7 C 0.000 4.000 8 N -0.938 5.938 9 Si 0.946 3.054 10 H -0.280 1.280 11 H -0.288 1.288 12 H -0.269 1.269 13 N -0.502 5.502 14 C 0.026 3.974 15 C -0.110 4.110 16 C 0.083 3.917 17 H 0.051 0.949 18 N -0.548 5.548 19 C 0.025 3.975 20 C 0.019 3.981 21 C 0.078 3.922 22 H 0.042 0.958 23 C -0.132 4.132 24 H 0.070 0.930 25 H 0.058 0.942 26 H 0.049 0.951 27 H 0.010 0.990 28 H -0.017 1.017 29 H 0.256 0.744 30 H 0.077 0.923 31 H 0.053 0.947 32 H 0.079 0.921 33 H 0.091 0.909 34 H 0.032 0.968 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.063 0.937 38 H 0.073 0.927 39 H 0.031 0.969 40 H 0.061 0.939 41 H 0.039 0.961 42 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.602 -0.973 15.808 17.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.026 4.026 3 H 0.080 0.920 4 C -0.003 4.003 5 C -0.519 4.519 6 H 0.071 0.929 7 C -0.195 4.195 8 N -0.580 5.580 9 Si 0.773 3.227 10 H -0.206 1.206 11 H -0.214 1.214 12 H -0.193 1.193 13 N -0.226 5.226 14 C -0.102 4.102 15 C -0.147 4.147 16 C -0.027 4.027 17 H 0.069 0.931 18 N -0.272 5.272 19 C -0.122 4.122 20 C -0.129 4.129 21 C -0.031 4.031 22 H 0.059 0.941 23 C -0.190 4.190 24 H 0.088 0.912 25 H 0.077 0.923 26 H 0.068 0.932 27 H 0.028 0.972 28 H 0.001 0.999 29 H 0.065 0.935 30 H 0.096 0.904 31 H 0.071 0.929 32 H 0.097 0.903 33 H 0.109 0.891 34 H 0.051 0.949 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.082 0.918 38 H 0.092 0.908 39 H 0.050 0.950 40 H 0.080 0.920 41 H 0.058 0.942 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -5.549 -1.082 15.359 16.366 hybrid contribution -0.638 -0.173 -0.274 0.716 sum -6.187 -1.256 15.084 16.352 Atomic orbital electron populations 1.22415 0.97504 1.01426 1.02106 1.21729 0.91954 0.97290 0.91608 0.92021 1.19145 0.95298 0.94900 0.90964 1.21310 0.92614 1.29534 1.08461 0.92922 1.25695 1.02025 0.96036 0.95774 1.70082 1.36513 1.35973 1.15471 0.85724 0.81811 0.78475 0.76655 1.20614 1.21419 1.19347 1.64820 1.55027 1.01626 1.01153 1.23320 0.99568 0.97187 0.90083 1.22645 1.02454 0.92549 0.97103 1.22483 0.94646 0.91144 0.94387 0.93131 1.62017 1.45815 1.01974 1.17386 1.22438 1.00335 1.03017 0.86444 1.22597 0.97255 0.91670 1.01340 1.22290 0.95663 0.90482 0.94666 0.94073 1.21906 0.99663 0.95992 1.01394 0.91151 0.92323 0.93204 0.97225 0.99855 0.93529 0.90446 0.92865 0.90284 0.89097 0.94909 0.90989 0.91021 0.91796 0.90808 0.95001 0.91971 0.94219 0.92750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.95 8.46 71.98 0.61 -5.34 16 2 C 0.08 3.43 2.36 44.92 0.11 3.54 16 3 H 0.06 2.59 8.14 -2.39 -0.02 2.57 16 4 C 0.03 1.78 3.93 29.85 0.12 1.90 16 5 C -0.48 -27.43 7.33 25.60 0.19 -27.24 16 6 H 0.05 3.03 7.74 -2.91 -0.02 3.01 16 7 C 0.00 0.03 5.46 84.66 0.46 0.49 16 8 N -0.94 -57.79 13.29 21.45 0.28 -57.51 16 9 Si 0.95 46.51 29.54 68.60 2.03 48.54 16 10 H -0.28 -13.58 7.11 99.48 0.71 -12.87 16 11 H -0.29 -13.90 7.11 99.48 0.71 -13.20 16 12 H -0.27 -12.78 7.11 99.48 0.71 -12.08 16 13 N -0.50 -19.27 4.51 -833.07 -3.76 -23.02 16 14 C 0.03 0.77 6.41 86.65 0.56 1.32 16 15 C -0.11 -2.73 5.59 31.80 0.18 -2.55 16 16 C 0.08 2.32 2.82 45.79 0.13 2.45 16 17 H 0.05 1.31 8.00 -2.39 -0.02 1.29 16 18 N -0.55 -14.83 3.14 -918.07 -2.88 -17.71 16 19 C 0.03 0.52 8.80 127.69 1.12 1.65 16 20 C 0.02 0.47 8.86 127.69 1.13 1.60 16 21 C 0.08 2.81 2.29 45.06 0.10 2.92 16 22 H 0.04 1.53 5.20 -2.39 -0.01 1.52 16 23 C -0.13 -5.55 7.76 71.98 0.56 -4.99 16 24 H 0.07 1.99 5.99 -2.39 -0.01 1.97 16 25 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 26 H 0.05 1.74 6.11 -2.39 -0.01 1.72 16 27 H 0.01 0.54 5.76 -2.39 -0.01 0.52 16 28 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 29 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 30 H 0.08 2.21 8.14 -2.38 -0.02 2.19 16 31 H 0.05 1.40 5.85 -2.39 -0.01 1.39 16 32 H 0.08 2.09 6.38 -2.39 -0.02 2.07 16 33 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 34 H 0.03 0.59 8.10 -2.39 -0.02 0.57 16 35 H 0.07 1.34 8.05 -2.39 -0.02 1.32 16 36 H 0.07 1.48 6.30 -2.39 -0.02 1.47 16 37 H 0.06 1.76 5.21 -2.39 -0.01 1.75 16 38 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 39 H 0.03 0.67 8.14 -2.39 -0.02 0.65 16 40 H 0.06 2.64 6.81 -2.39 -0.02 2.63 16 41 H 0.04 1.53 5.86 -2.39 -0.01 1.51 16 42 H 0.05 2.83 4.23 -2.39 -0.01 2.82 16 Total: -1.00 -64.51 302.75 1.91 -62.60 By element: Atomic # 1 Polarization: 10.38 SS G_CDS: 0.98 Total: 11.36 kcal Atomic # 6 Polarization: -29.52 SS G_CDS: 5.26 Total: -24.26 kcal Atomic # 7 Polarization: -91.88 SS G_CDS: -6.36 Total: -98.24 kcal Atomic # 14 Polarization: 46.51 SS G_CDS: 2.03 Total: 48.54 kcal Total: -64.51 1.91 -62.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695809435.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.831 kcal (2) G-P(sol) polarization free energy of solvation -64.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.600 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds