Wall clock time and date at job start Mon Mar 30 2020 17:53:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.47962 * 110.99835 * 2 1 4 4 C 1.53934 * 86.18189 * 137.58434 * 3 2 1 5 5 C 1.47960 * 111.00299 * 99.35857 * 2 1 3 6 6 H 1.09002 * 113.75849 * 336.73675 * 5 2 1 7 7 C 1.52996 * 113.85843 * 108.08798 * 5 2 1 8 8 N 1.46901 * 109.47273 * 283.59216 * 7 5 2 9 9 C 1.46900 * 111.00146 * 179.97438 * 8 7 5 10 10 C 1.53001 * 109.47169 * 180.02562 * 9 8 7 11 11 C 1.53004 * 109.46917 * 300.00082 * 10 9 8 12 12 C 1.53004 * 109.47176 * 59.99824 * 10 9 8 13 13 C 1.52993 * 109.47144 * 180.02562 * 10 9 8 14 14 C 1.50704 * 109.47489 * 179.97438 * 13 10 9 15 15 H 1.08006 * 119.99262 * 0.02562 * 14 13 10 16 16 C 1.37873 * 120.00601 * 179.97438 * 14 13 10 17 17 N 1.31517 * 119.99627 * 0.02562 * 16 14 13 18 18 Si 1.86793 * 120.00131 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.47223 * 90.00587 * 18 16 14 20 20 H 1.48510 * 109.47109 * 210.00319 * 18 16 14 21 21 H 1.48501 * 109.47362 * 329.99963 * 18 16 14 22 22 H 1.08999 * 109.47315 * 320.64063 * 1 2 3 23 23 H 1.09002 * 109.47004 * 80.64053 * 1 2 3 24 24 H 1.08997 * 109.47186 * 200.64079 * 1 2 3 25 25 H 1.08995 * 113.76330 * 23.26473 * 3 2 1 26 26 H 1.09005 * 113.85979 * 251.91106 * 3 2 1 27 27 H 1.08994 * 113.73931 * 221.92078 * 4 3 2 28 28 H 1.09001 * 113.73391 * 90.63792 * 4 3 2 29 29 H 1.08999 * 109.47520 * 43.59129 * 7 5 2 30 30 H 1.09001 * 109.47200 * 163.59117 * 7 5 2 31 31 H 1.00897 * 110.99874 * 303.95224 * 8 7 5 32 32 H 1.09005 * 109.47110 * 300.00205 * 9 8 7 33 33 H 1.08999 * 109.47086 * 60.00125 * 9 8 7 34 34 H 1.08997 * 109.47259 * 59.99907 * 11 10 9 35 35 H 1.08999 * 109.46799 * 179.97438 * 11 10 9 36 36 H 1.08999 * 109.47150 * 299.99916 * 11 10 9 37 37 H 1.08995 * 109.46973 * 60.00072 * 12 10 9 38 38 H 1.08997 * 109.46836 * 179.97438 * 12 10 9 39 39 H 1.08997 * 109.47161 * 300.00192 * 12 10 9 40 40 H 1.09006 * 109.47459 * 299.99617 * 13 10 9 41 41 H 1.09008 * 109.47315 * 59.99948 * 13 10 9 42 42 H 0.96997 * 119.99842 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9992 1.3814 0.0000 4 6 3.0211 0.8793 1.0360 5 6 1.9993 -0.2246 1.3629 6 1 1.3010 0.0441 2.1556 7 6 2.6266 -1.6056 1.5630 8 7 1.5642 -2.6105 1.7027 9 6 2.1307 -3.9520 1.8963 10 6 0.9964 -4.9692 2.0367 11 6 0.1292 -4.6027 3.2429 12 6 0.1392 -4.9555 0.7694 13 6 1.5863 -6.3662 2.2390 14 6 0.4691 -7.3681 2.3780 15 1 -0.5590 -7.0409 2.3267 16 6 0.7592 -8.7023 2.5695 17 7 2.0111 -9.1006 2.6315 18 14 -0.6256 -9.9438 2.7425 19 1 -0.9881 -10.4709 1.4024 20 1 -0.1812 -11.0633 3.6112 21 1 -1.8086 -9.2843 3.3517 22 1 -0.3634 0.7946 0.6517 23 1 -0.3633 0.1671 -1.0140 24 1 -0.3633 -0.9617 0.3622 25 1 1.3010 2.1198 0.3940 26 1 2.4461 1.6821 -0.9476 27 1 3.1921 1.5758 1.8567 28 1 3.9451 0.5052 0.5951 29 1 3.2477 -1.8509 0.7015 30 1 3.2408 -1.5987 2.4635 31 1 0.9364 -2.3707 2.4552 32 1 2.7481 -4.2133 1.0368 33 1 2.7416 -3.9617 2.7989 34 1 -0.2910 -3.6073 3.0992 35 1 -0.6791 -5.3271 3.3427 36 1 0.7399 -4.6124 4.1457 37 1 0.7569 -5.2165 -0.0898 38 1 -0.6686 -5.6804 0.8694 39 1 -0.2811 -3.9601 0.6258 40 1 2.2043 -6.6276 1.3800 41 1 2.1967 -6.3757 3.1421 42 1 2.2152 -10.0391 2.7666 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000712609318.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:53:40 Heat of formation + Delta-G solvation = 16.545153 kcal Electronic energy + Delta-G solvation = -17799.179269 eV Core-core repulsion = 15200.508557 eV Total energy + Delta-G solvation = -2598.670712 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.00792 -37.46863 -34.14228 -32.13862 -30.60863 -28.15995 -26.77071 -26.27698 -24.83054 -24.13271 -22.89868 -21.81421 -19.72972 -17.79023 -16.21725 -16.13075 -15.70093 -15.33146 -14.67325 -14.29060 -14.02648 -13.60842 -13.16642 -13.13233 -12.78766 -12.51253 -11.96837 -11.80098 -11.70890 -11.46869 -11.38623 -10.97552 -10.85373 -10.80867 -10.72047 -10.70801 -10.44972 -10.19976 -10.06350 -9.62841 -8.98796 -8.84955 -8.74153 -8.28378 -7.97091 -5.92994 -3.92936 3.35623 3.41964 3.44696 3.79544 4.28320 4.48284 4.53765 4.83471 5.09588 5.18982 5.26155 5.30518 5.39789 5.42824 5.49592 5.57614 5.67297 5.75635 5.85918 5.87949 5.98763 6.03131 6.11058 6.30266 6.38008 6.42830 6.56965 6.72430 6.84232 6.88116 7.02285 7.26008 7.29560 7.31707 7.48159 7.73078 7.77445 7.90722 8.07699 8.52352 9.12519 9.69680 11.18771 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.051879 B = 0.004340 C = 0.004182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 539.583481 B = 6449.413691 C = 6693.547800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.007 4.007 2 N -0.466 5.466 3 C -0.005 4.005 4 C -0.142 4.142 5 C 0.036 3.964 6 H 0.073 0.927 7 C 0.077 3.923 8 N -0.681 5.681 9 C 0.071 3.929 10 C -0.058 4.058 11 C -0.128 4.128 12 C -0.114 4.114 13 C 0.033 3.967 14 C -0.506 4.506 15 H 0.059 0.941 16 C 0.054 3.946 17 N -0.898 5.898 18 Si 0.887 3.113 19 H -0.282 1.282 20 H -0.288 1.288 21 H -0.275 1.275 22 H 0.025 0.975 23 H 0.064 0.936 24 H 0.081 0.919 25 H 0.064 0.936 26 H 0.086 0.914 27 H 0.069 0.931 28 H 0.091 0.909 29 H 0.078 0.922 30 H 0.029 0.971 31 H 0.333 0.667 32 H 0.066 0.934 33 H 0.021 0.979 34 H 0.032 0.968 35 H 0.063 0.937 36 H 0.039 0.961 37 H 0.039 0.961 38 H 0.052 0.948 39 H 0.042 0.958 40 H 0.015 0.985 41 H 0.012 0.988 42 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.214 19.490 -1.953 19.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 N -0.188 5.188 3 C -0.134 4.134 4 C -0.181 4.181 5 C -0.073 4.073 6 H 0.091 0.909 7 C -0.053 4.053 8 N -0.313 5.313 9 C -0.057 4.057 10 C -0.058 4.058 11 C -0.185 4.185 12 C -0.171 4.171 13 C -0.004 4.004 14 C -0.544 4.544 15 H 0.077 0.923 16 C -0.146 4.146 17 N -0.538 5.538 18 Si 0.716 3.284 19 H -0.208 1.208 20 H -0.214 1.214 21 H -0.200 1.200 22 H 0.044 0.956 23 H 0.083 0.917 24 H 0.099 0.901 25 H 0.083 0.917 26 H 0.104 0.896 27 H 0.087 0.913 28 H 0.110 0.890 29 H 0.096 0.904 30 H 0.047 0.953 31 H 0.151 0.849 32 H 0.084 0.916 33 H 0.039 0.961 34 H 0.051 0.949 35 H 0.082 0.918 36 H 0.058 0.942 37 H 0.058 0.942 38 H 0.071 0.929 39 H 0.061 0.939 40 H 0.033 0.967 41 H 0.030 0.970 42 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -0.044 18.791 -3.143 19.052 hybrid contribution -0.731 -0.226 1.666 1.834 sum -0.775 18.565 -1.477 18.640 Atomic orbital electron populations 1.22828 0.89484 1.01947 1.01334 1.68464 1.09347 1.16805 1.24201 1.23910 0.97424 0.91996 1.00074 1.23381 0.98451 0.97484 0.98763 1.23463 0.96470 0.95606 0.91787 0.90864 1.21819 0.93558 0.89757 1.00184 1.60519 1.18449 1.01950 1.50333 1.22092 0.96944 0.87623 0.99075 1.20620 0.94053 0.96218 0.94948 1.21763 1.00277 0.99061 0.97438 1.21576 0.99448 0.99653 0.96461 1.19126 0.95897 0.88694 0.96694 1.21248 0.93046 0.91846 1.48285 0.92326 1.25014 0.95211 0.98585 0.95801 1.69970 1.17298 1.15798 1.50740 0.86668 0.82582 0.81254 0.77931 1.20779 1.21414 1.19966 0.95618 0.91704 0.90064 0.91736 0.89588 0.91258 0.89013 0.90366 0.95274 0.84904 0.91585 0.96088 0.94934 0.91783 0.94176 0.94189 0.92863 0.93934 0.96681 0.96967 0.93197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.08 9.64 60.06 0.58 0.50 16 2 N -0.47 -5.48 6.36 -238.95 -1.52 -7.01 16 3 C -0.01 -0.05 7.97 -2.77 -0.02 -0.07 16 4 C -0.14 -1.27 7.85 -25.80 -0.20 -1.47 16 5 C 0.04 0.40 3.49 -66.66 -0.23 0.16 16 6 H 0.07 0.77 7.92 -51.93 -0.41 0.36 16 7 C 0.08 0.98 5.72 -3.83 -0.02 0.96 16 8 N -0.68 -10.12 5.71 -113.78 -0.65 -10.77 16 9 C 0.07 1.27 4.65 -3.82 -0.02 1.25 16 10 C -0.06 -1.18 0.60 -154.51 -0.09 -1.27 16 11 C -0.13 -2.41 7.89 37.16 0.29 -2.12 16 12 C -0.11 -2.28 8.07 37.16 0.30 -1.98 16 13 C 0.03 0.86 4.04 -27.88 -0.11 0.74 16 14 C -0.51 -14.02 7.65 -34.44 -0.26 -14.29 16 15 H 0.06 1.58 5.68 -52.48 -0.30 1.28 16 16 C 0.05 1.55 5.46 -17.82 -0.10 1.46 16 17 N -0.90 -27.16 13.29 55.43 0.74 -26.42 16 18 Si 0.89 21.81 29.54 -169.99 -5.02 16.79 16 19 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 20 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 21 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 22 H 0.03 0.25 7.62 -51.93 -0.40 -0.15 16 23 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 24 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 25 H 0.06 0.52 7.62 -51.93 -0.40 0.13 16 26 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 27 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 28 H 0.09 0.82 8.10 -51.93 -0.42 0.40 16 29 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 30 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.33 4.71 6.77 -39.29 -0.27 4.45 16 32 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 33 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 34 H 0.03 0.52 6.57 -51.93 -0.34 0.18 16 35 H 0.06 1.31 6.62 -51.93 -0.34 0.97 16 36 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 37 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.05 1.13 6.62 -51.93 -0.34 0.78 16 39 H 0.04 0.77 7.60 -51.93 -0.39 0.37 16 40 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.01 0.33 8.14 -51.92 -0.42 -0.09 16 42 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 326.39 15.07 4.92 4.92 Total: -1.00 -29.59 326.39 -9.25 -38.83 By element: Atomic # 1 Polarization: 7.60 SS G_CDS: -7.82 Total: -0.22 kcal Atomic # 6 Polarization: -16.22 SS G_CDS: 0.11 Total: -16.12 kcal Atomic # 7 Polarization: -42.76 SS G_CDS: -1.43 Total: -44.20 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -29.59 -9.25 -38.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712609318.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.377 kcal (2) G-P(sol) polarization free energy of solvation -29.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.832 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds