Wall clock time and date at job start Mon Mar 30 2020 17:53:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.47962 * 110.99835 * 2 1 4 4 C 1.53934 * 86.18189 * 137.58434 * 3 2 1 5 5 C 1.47960 * 111.00299 * 99.35857 * 2 1 3 6 6 H 1.09002 * 113.75849 * 336.73675 * 5 2 1 7 7 C 1.52996 * 113.85843 * 108.08798 * 5 2 1 8 8 N 1.46901 * 109.47273 * 283.59216 * 7 5 2 9 9 C 1.46900 * 111.00146 * 179.97438 * 8 7 5 10 10 C 1.53001 * 109.47169 * 180.02562 * 9 8 7 11 11 C 1.53004 * 109.46917 * 300.00082 * 10 9 8 12 12 C 1.53004 * 109.47176 * 59.99824 * 10 9 8 13 13 C 1.52993 * 109.47144 * 180.02562 * 10 9 8 14 14 C 1.50704 * 109.47489 * 179.97438 * 13 10 9 15 15 H 1.08006 * 119.99262 * 0.02562 * 14 13 10 16 16 C 1.37873 * 120.00601 * 179.97438 * 14 13 10 17 17 N 1.31517 * 119.99627 * 0.02562 * 16 14 13 18 18 Si 1.86793 * 120.00131 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.47223 * 90.00587 * 18 16 14 20 20 H 1.48510 * 109.47109 * 210.00319 * 18 16 14 21 21 H 1.48501 * 109.47362 * 329.99963 * 18 16 14 22 22 H 1.08999 * 109.47315 * 320.64063 * 1 2 3 23 23 H 1.09002 * 109.47004 * 80.64053 * 1 2 3 24 24 H 1.08997 * 109.47186 * 200.64079 * 1 2 3 25 25 H 1.08995 * 113.76330 * 23.26473 * 3 2 1 26 26 H 1.09005 * 113.85979 * 251.91106 * 3 2 1 27 27 H 1.08994 * 113.73931 * 221.92078 * 4 3 2 28 28 H 1.09001 * 113.73391 * 90.63792 * 4 3 2 29 29 H 1.08999 * 109.47520 * 43.59129 * 7 5 2 30 30 H 1.09001 * 109.47200 * 163.59117 * 7 5 2 31 31 H 1.00897 * 110.99874 * 303.95224 * 8 7 5 32 32 H 1.09005 * 109.47110 * 300.00205 * 9 8 7 33 33 H 1.08999 * 109.47086 * 60.00125 * 9 8 7 34 34 H 1.08997 * 109.47259 * 59.99907 * 11 10 9 35 35 H 1.08999 * 109.46799 * 179.97438 * 11 10 9 36 36 H 1.08999 * 109.47150 * 299.99916 * 11 10 9 37 37 H 1.08995 * 109.46973 * 60.00072 * 12 10 9 38 38 H 1.08997 * 109.46836 * 179.97438 * 12 10 9 39 39 H 1.08997 * 109.47161 * 300.00192 * 12 10 9 40 40 H 1.09006 * 109.47459 * 299.99617 * 13 10 9 41 41 H 1.09008 * 109.47315 * 59.99948 * 13 10 9 42 42 H 0.96997 * 119.99842 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9992 1.3814 0.0000 4 6 3.0211 0.8793 1.0360 5 6 1.9993 -0.2246 1.3629 6 1 1.3010 0.0441 2.1556 7 6 2.6266 -1.6056 1.5630 8 7 1.5642 -2.6105 1.7027 9 6 2.1307 -3.9520 1.8963 10 6 0.9964 -4.9692 2.0367 11 6 0.1292 -4.6027 3.2429 12 6 0.1392 -4.9555 0.7694 13 6 1.5863 -6.3662 2.2390 14 6 0.4691 -7.3681 2.3780 15 1 -0.5590 -7.0409 2.3267 16 6 0.7592 -8.7023 2.5695 17 7 2.0111 -9.1006 2.6315 18 14 -0.6256 -9.9438 2.7425 19 1 -0.9881 -10.4709 1.4024 20 1 -0.1812 -11.0633 3.6112 21 1 -1.8086 -9.2843 3.3517 22 1 -0.3634 0.7946 0.6517 23 1 -0.3633 0.1671 -1.0140 24 1 -0.3633 -0.9617 0.3622 25 1 1.3010 2.1198 0.3940 26 1 2.4461 1.6821 -0.9476 27 1 3.1921 1.5758 1.8567 28 1 3.9451 0.5052 0.5951 29 1 3.2477 -1.8509 0.7015 30 1 3.2408 -1.5987 2.4635 31 1 0.9364 -2.3707 2.4552 32 1 2.7481 -4.2133 1.0368 33 1 2.7416 -3.9617 2.7989 34 1 -0.2910 -3.6073 3.0992 35 1 -0.6791 -5.3271 3.3427 36 1 0.7399 -4.6124 4.1457 37 1 0.7569 -5.2165 -0.0898 38 1 -0.6686 -5.6804 0.8694 39 1 -0.2811 -3.9601 0.6258 40 1 2.2043 -6.6276 1.3800 41 1 2.1967 -6.3757 3.1421 42 1 2.2152 -10.0391 2.7666 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000712609318.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:53:40 Heat of formation + Delta-G solvation = -3.904727 kcal Electronic energy + Delta-G solvation = -17800.066042 eV Core-core repulsion = 15200.508557 eV Total energy + Delta-G solvation = -2599.557485 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.82540 -39.04244 -35.66290 -34.11704 -31.44629 -29.53819 -28.52037 -27.89042 -26.35291 -24.92395 -24.43349 -23.14522 -20.56949 -19.42531 -18.32871 -16.98379 -16.90544 -16.51841 -16.20656 -15.63795 -15.30970 -15.07054 -14.59155 -14.17282 -14.07367 -13.90907 -13.82161 -13.40810 -12.81441 -12.75241 -12.65322 -12.41140 -12.31518 -12.25001 -12.18870 -12.11558 -11.93112 -11.62169 -11.54446 -11.36145 -10.85519 -10.69333 -10.50232 -9.61848 -9.20998 -8.13608 -6.20825 1.41067 1.41889 1.52353 2.44132 2.98477 3.20235 3.31243 3.69245 3.97872 4.14972 4.21068 4.29724 4.37528 4.38709 4.43898 4.51522 4.61064 4.69054 4.77765 4.83591 4.84672 4.96231 4.97187 4.99313 5.08298 5.12835 5.21802 5.22382 5.32046 5.51741 5.54191 5.57964 5.58997 5.66189 5.88054 5.93120 6.12396 6.24758 6.37802 6.59011 6.94290 7.46546 8.98919 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.051879 B = 0.004340 C = 0.004182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 539.583481 B = 6449.413691 C = 6693.547800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.004 4.004 2 N -0.495 5.495 3 C -0.001 4.001 4 C -0.134 4.134 5 C 0.036 3.964 6 H 0.083 0.917 7 C 0.078 3.922 8 N -0.678 5.678 9 C 0.084 3.916 10 C -0.055 4.055 11 C -0.120 4.120 12 C -0.104 4.104 13 C 0.040 3.960 14 C -0.514 4.514 15 H 0.066 0.934 16 C -0.005 4.005 17 N -0.939 5.939 18 Si 0.957 3.043 19 H -0.276 1.276 20 H -0.286 1.286 21 H -0.262 1.262 22 H 0.040 0.960 23 H 0.064 0.936 24 H 0.064 0.936 25 H 0.079 0.921 26 H 0.089 0.911 27 H 0.088 0.912 28 H 0.088 0.912 29 H 0.063 0.937 30 H 0.038 0.962 31 H 0.340 0.660 32 H 0.051 0.949 33 H 0.017 0.983 34 H 0.067 0.933 35 H 0.046 0.954 36 H 0.037 0.963 37 H 0.026 0.974 38 H 0.038 0.962 39 H 0.066 0.934 40 H -0.018 1.018 41 H -0.016 1.016 42 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.532 21.343 -1.642 21.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 N -0.218 5.218 3 C -0.129 4.129 4 C -0.172 4.172 5 C -0.073 4.073 6 H 0.100 0.900 7 C -0.051 4.051 8 N -0.310 5.310 9 C -0.045 4.045 10 C -0.055 4.055 11 C -0.178 4.178 12 C -0.161 4.161 13 C 0.002 3.998 14 C -0.553 4.553 15 H 0.084 0.916 16 C -0.201 4.201 17 N -0.580 5.580 18 Si 0.782 3.218 19 H -0.202 1.202 20 H -0.212 1.212 21 H -0.186 1.186 22 H 0.059 0.941 23 H 0.083 0.917 24 H 0.083 0.917 25 H 0.097 0.903 26 H 0.108 0.892 27 H 0.107 0.893 28 H 0.107 0.893 29 H 0.082 0.918 30 H 0.056 0.944 31 H 0.159 0.841 32 H 0.069 0.931 33 H 0.035 0.965 34 H 0.085 0.915 35 H 0.065 0.935 36 H 0.056 0.944 37 H 0.045 0.955 38 H 0.057 0.943 39 H 0.084 0.916 40 H 0.000 1.000 41 H 0.003 0.997 42 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -1.375 20.670 -2.834 20.908 hybrid contribution -0.274 -0.762 1.538 1.738 sum -1.649 19.908 -1.296 20.018 Atomic orbital electron populations 1.22777 0.89334 1.01540 1.01641 1.68452 1.09757 1.18824 1.24726 1.23956 0.97465 0.91029 1.00496 1.23341 0.97782 0.96832 0.99229 1.23451 0.97360 0.94693 0.91837 0.89952 1.21841 0.93081 0.90291 0.99917 1.60439 1.19143 1.00866 1.50528 1.21779 0.95629 0.88824 0.98260 1.20486 0.95048 0.93851 0.96111 1.21666 0.99279 1.00457 0.96357 1.21467 0.98552 1.00488 0.95585 1.19010 0.94907 0.92042 0.93830 1.21623 0.93782 0.92464 1.47382 0.91600 1.25929 0.97685 1.00917 0.95591 1.70115 1.19587 1.16276 1.52026 0.85565 0.79630 0.78516 0.78069 1.20175 1.21177 1.18583 0.94143 0.91674 0.91689 0.90289 0.89228 0.89302 0.89334 0.91821 0.94431 0.84054 0.93089 0.96467 0.91458 0.93495 0.94385 0.95497 0.94293 0.91560 0.99994 0.99733 0.93161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 -0.08 9.64 127.69 1.23 1.15 16 2 N -0.49 -10.64 6.36 -909.92 -5.79 -16.43 16 3 C 0.00 -0.02 7.97 86.40 0.69 0.67 16 4 C -0.13 -2.02 7.85 31.24 0.25 -1.78 16 5 C 0.04 0.71 3.49 45.02 0.16 0.86 16 6 H 0.08 1.47 7.92 -2.39 -0.02 1.45 16 7 C 0.08 1.89 5.72 86.30 0.49 2.38 16 8 N -0.68 -19.13 5.71 -513.88 -2.94 -22.06 16 9 C 0.08 2.99 4.65 86.30 0.40 3.39 16 10 C -0.05 -2.22 0.60 -52.18 -0.03 -2.25 16 11 C -0.12 -4.38 7.89 71.98 0.57 -3.81 16 12 C -0.10 -4.09 8.07 71.98 0.58 -3.51 16 13 C 0.04 2.10 4.04 29.85 0.12 2.22 16 14 C -0.51 -28.93 7.65 25.60 0.20 -28.73 16 15 H 0.07 3.55 5.68 -2.91 -0.02 3.53 16 16 C 0.00 -0.27 5.46 84.65 0.46 0.19 16 17 N -0.94 -58.16 13.29 21.45 0.28 -57.88 16 18 Si 0.96 44.92 29.54 68.60 2.03 46.95 16 19 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 20 H -0.29 -13.24 7.11 99.48 0.71 -12.54 16 21 H -0.26 -11.64 7.11 99.48 0.71 -10.94 16 22 H 0.04 0.67 7.62 -2.39 -0.02 0.65 16 23 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 24 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 25 H 0.08 1.01 7.62 -2.39 -0.02 0.99 16 26 H 0.09 1.33 8.14 -2.38 -0.02 1.31 16 27 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 28 H 0.09 1.41 8.10 -2.39 -0.02 1.39 16 29 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 30 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.34 8.78 6.77 -89.70 -0.61 8.17 16 32 H 0.05 1.95 8.14 -2.38 -0.02 1.93 16 33 H 0.02 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.07 1.97 6.57 -2.39 -0.02 1.96 16 35 H 0.05 1.86 6.62 -2.39 -0.02 1.84 16 36 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.04 1.62 6.62 -2.39 -0.02 1.61 16 39 H 0.07 2.29 7.60 -2.39 -0.02 2.27 16 40 H -0.02 -1.08 8.14 -2.38 -0.02 -1.10 16 41 H -0.02 -0.91 8.14 -2.38 -0.02 -0.93 16 42 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 Total: -1.00 -64.30 326.39 -0.95 -65.24 By element: Atomic # 1 Polarization: 13.04 SS G_CDS: 0.35 Total: 13.39 kcal Atomic # 6 Polarization: -34.31 SS G_CDS: 5.11 Total: -29.20 kcal Atomic # 7 Polarization: -87.94 SS G_CDS: -8.44 Total: -96.38 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.95 kcal Total: -64.30 -0.95 -65.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712609318.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.338 kcal (2) G-P(sol) polarization free energy of solvation -64.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds