Wall clock time and date at job start Mon Mar 30 2020 17:53:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.47958 * 111.00220 * 2 1 4 4 C 1.53932 * 86.18213 * 222.41826 * 3 2 1 5 5 C 1.47960 * 110.99873 * 260.63998 * 2 1 3 6 6 H 1.09000 * 113.86370 * 23.25735 * 5 2 1 7 7 C 1.53001 * 113.75991 * 251.90104 * 5 2 1 8 8 N 1.46897 * 109.47148 * 78.44183 * 7 5 2 9 9 C 1.46897 * 110.99931 * 179.97438 * 8 7 5 10 10 C 1.53007 * 109.47060 * 179.97438 * 9 8 7 11 11 C 1.53003 * 109.47175 * 300.00423 * 10 9 8 12 12 C 1.53006 * 109.46944 * 60.00276 * 10 9 8 13 13 C 1.52994 * 109.47092 * 179.97438 * 10 9 8 14 14 C 1.50703 * 109.47183 * 179.97438 * 13 10 9 15 15 H 1.08005 * 119.99444 * 0.02562 * 14 13 10 16 16 C 1.37877 * 119.99976 * 180.02562 * 14 13 10 17 17 N 1.31505 * 120.00293 * 0.02562 * 16 14 13 18 18 Si 1.86805 * 119.99821 * 180.02562 * 16 14 13 19 19 H 1.48505 * 109.46970 * 89.99865 * 18 16 14 20 20 H 1.48493 * 109.46971 * 209.99910 * 18 16 14 21 21 H 1.48499 * 109.47057 * 330.00320 * 18 16 14 22 22 H 1.08996 * 109.46894 * 159.35448 * 1 2 3 23 23 H 1.09000 * 109.47098 * 279.36079 * 1 2 3 24 24 H 1.09000 * 109.46612 * 39.35673 * 1 2 3 25 25 H 1.09001 * 113.75711 * 108.10017 * 3 2 1 26 26 H 1.08998 * 113.76069 * 336.74148 * 3 2 1 27 27 H 1.09000 * 113.73222 * 269.35881 * 4 3 2 28 28 H 1.08998 * 113.73610 * 138.08290 * 4 3 2 29 29 H 1.09008 * 109.46951 * 198.44101 * 7 5 2 30 30 H 1.09002 * 109.47245 * 318.43865 * 7 5 2 31 31 H 1.00906 * 111.00025 * 56.04828 * 8 7 5 32 32 H 1.08996 * 109.47569 * 299.99879 * 9 8 7 33 33 H 1.08997 * 109.46960 * 60.00447 * 9 8 7 34 34 H 1.08997 * 109.46835 * 59.99699 * 11 10 9 35 35 H 1.08992 * 109.46796 * 180.02562 * 11 10 9 36 36 H 1.09000 * 109.46590 * 300.00032 * 11 10 9 37 37 H 1.08998 * 109.47010 * 59.99822 * 12 10 9 38 38 H 1.08994 * 109.46972 * 180.02562 * 12 10 9 39 39 H 1.09004 * 109.47043 * 300.00036 * 12 10 9 40 40 H 1.08996 * 109.47614 * 300.00009 * 13 10 9 41 41 H 1.09007 * 109.47047 * 60.00670 * 13 10 9 42 42 H 0.96995 * 120.00497 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9993 1.3813 0.0000 4 6 3.0211 0.8792 -1.0360 5 6 1.9992 -0.2247 -1.3629 6 1 1.3023 0.0434 -2.1570 7 6 2.6263 -1.6062 -1.5605 8 7 1.5643 -2.6037 -1.7477 9 6 2.1304 -3.9453 -1.9414 10 6 0.9964 -4.9548 -2.1319 11 6 0.0992 -4.9538 -0.8925 12 6 0.1701 -4.5677 -3.3600 13 6 1.5861 -6.3519 -2.3343 14 6 0.4692 -7.3463 -2.5213 15 1 -0.5584 -7.0146 -2.4985 16 6 0.7592 -8.6792 -2.7214 17 7 2.0104 -9.0831 -2.7487 18 14 -0.6252 -9.9116 -2.9539 19 1 -0.9524 -10.0219 -4.3983 20 1 -0.1986 -11.2380 -2.4404 21 1 -1.8253 -9.4546 -2.2081 22 1 -0.3633 -0.9616 -0.3623 23 1 -0.3633 0.1671 1.0140 24 1 -0.3632 0.7946 -0.6517 25 1 2.4461 1.6801 0.9483 26 1 1.3011 2.1198 -0.3939 27 1 3.9451 0.5051 -0.5952 28 1 3.1922 1.5758 -1.8568 29 1 3.2695 -1.5908 -2.4404 30 1 3.2179 -1.8657 -0.6825 31 1 0.9624 -2.3511 -2.5171 32 1 2.7699 -3.9459 -2.8241 33 1 2.7187 -4.2212 -1.0663 34 1 -0.3208 -3.9583 -0.7489 35 1 -0.7083 -5.6732 -1.0281 36 1 0.6880 -5.2295 -0.0176 37 1 0.8093 -4.5683 -4.2429 38 1 -0.6380 -5.2865 -3.4955 39 1 -0.2500 -3.5722 -3.2163 40 1 2.2249 -6.3523 -3.2174 41 1 2.1750 -6.6280 -1.4595 42 1 2.2145 -10.0207 -2.8899 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000712609320.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:53:42 Heat of formation + Delta-G solvation = 16.511118 kcal Electronic energy + Delta-G solvation = -17792.413867 eV Core-core repulsion = 15193.741679 eV Total energy + Delta-G solvation = -2598.672188 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.00969 -37.47136 -34.14577 -32.14056 -30.60755 -28.16121 -26.77220 -26.27823 -24.83201 -24.13515 -22.89845 -21.81438 -19.72977 -17.79076 -16.21867 -16.12855 -15.70851 -15.33363 -14.67414 -14.29090 -14.03364 -13.60863 -13.16671 -13.12369 -12.79112 -12.51329 -11.96885 -11.79874 -11.72006 -11.47417 -11.38057 -10.98218 -10.83939 -10.80904 -10.72756 -10.71757 -10.44836 -10.20006 -10.06128 -9.63118 -8.98895 -8.85440 -8.74504 -8.28538 -7.97539 -5.93010 -3.92984 3.35295 3.41889 3.45044 3.79715 4.28040 4.48167 4.53669 4.83555 5.09504 5.19304 5.25698 5.30506 5.39657 5.42800 5.49425 5.57305 5.67204 5.75546 5.85864 5.87651 5.98656 6.02957 6.10987 6.30193 6.38040 6.42768 6.56828 6.72262 6.84091 6.87915 7.01882 7.25730 7.29396 7.31840 7.47970 7.72953 7.77249 7.90659 8.07622 8.52302 9.12477 9.69643 11.18743 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.051994 B = 0.004329 C = 0.004174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 538.394611 B = 6466.606964 C = 6707.325180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.007 4.007 2 N -0.467 5.467 3 C -0.005 4.005 4 C -0.143 4.143 5 C 0.037 3.963 6 H 0.074 0.926 7 C 0.076 3.924 8 N -0.682 5.682 9 C 0.071 3.929 10 C -0.058 4.058 11 C -0.114 4.114 12 C -0.128 4.128 13 C 0.033 3.967 14 C -0.506 4.506 15 H 0.059 0.941 16 C 0.054 3.946 17 N -0.898 5.898 18 Si 0.887 3.113 19 H -0.282 1.282 20 H -0.288 1.288 21 H -0.274 1.274 22 H 0.081 0.919 23 H 0.064 0.936 24 H 0.025 0.975 25 H 0.086 0.914 26 H 0.065 0.935 27 H 0.091 0.909 28 H 0.069 0.931 29 H 0.029 0.971 30 H 0.078 0.922 31 H 0.333 0.667 32 H 0.021 0.979 33 H 0.066 0.934 34 H 0.041 0.959 35 H 0.053 0.947 36 H 0.039 0.961 37 H 0.039 0.961 38 H 0.063 0.937 39 H 0.032 0.968 40 H 0.012 0.988 41 H 0.015 0.985 42 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.185 19.463 2.207 19.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 N -0.189 5.189 3 C -0.134 4.134 4 C -0.181 4.181 5 C -0.073 4.073 6 H 0.092 0.908 7 C -0.053 4.053 8 N -0.313 5.313 9 C -0.057 4.057 10 C -0.058 4.058 11 C -0.171 4.171 12 C -0.185 4.185 13 C -0.004 4.004 14 C -0.544 4.544 15 H 0.077 0.923 16 C -0.146 4.146 17 N -0.538 5.538 18 Si 0.715 3.285 19 H -0.209 1.209 20 H -0.214 1.214 21 H -0.199 1.199 22 H 0.099 0.901 23 H 0.083 0.917 24 H 0.044 0.956 25 H 0.104 0.896 26 H 0.083 0.917 27 H 0.110 0.890 28 H 0.087 0.913 29 H 0.047 0.953 30 H 0.097 0.903 31 H 0.151 0.849 32 H 0.039 0.961 33 H 0.084 0.916 34 H 0.061 0.939 35 H 0.072 0.928 36 H 0.058 0.942 37 H 0.058 0.942 38 H 0.082 0.918 39 H 0.051 0.949 40 H 0.030 0.970 41 H 0.033 0.967 42 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -0.038 18.752 3.407 19.060 hybrid contribution -0.700 -0.208 -1.707 1.857 sum -0.738 18.544 1.700 18.636 Atomic orbital electron populations 1.22829 0.89478 1.01975 1.01327 1.68479 1.09368 1.16852 1.24201 1.23910 0.97425 0.91988 1.00074 1.23383 0.98454 0.97494 0.98769 1.23465 0.96458 0.95594 0.91789 0.90817 1.21825 0.93395 0.89829 1.00301 1.60539 1.20106 1.02021 1.48621 1.22092 0.96833 0.87657 0.99165 1.20622 0.94098 0.96254 0.94868 1.21576 0.99295 0.99644 0.96626 1.21764 1.00383 0.99020 0.97375 1.19124 0.95889 0.88695 0.96701 1.21248 0.93089 0.92076 1.48025 0.92323 1.25012 0.95204 0.98553 0.95824 1.69962 1.17340 1.15791 1.50707 0.86671 0.82652 0.80937 0.78207 1.20859 1.21375 1.19911 0.90053 0.91711 0.95597 0.89587 0.91713 0.89019 0.91251 0.95260 0.90326 0.84901 0.96077 0.91584 0.93950 0.92844 0.94189 0.94171 0.91792 0.94926 0.96975 0.96671 0.93190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.08 9.65 60.07 0.58 0.50 16 2 N -0.47 -5.49 6.36 -238.97 -1.52 -7.01 16 3 C -0.01 -0.05 7.97 -2.77 -0.02 -0.07 16 4 C -0.14 -1.27 7.85 -25.80 -0.20 -1.47 16 5 C 0.04 0.40 3.50 -66.65 -0.23 0.17 16 6 H 0.07 0.78 7.93 -51.93 -0.41 0.37 16 7 C 0.08 0.98 5.72 -3.83 -0.02 0.96 16 8 N -0.68 -10.12 5.71 -113.78 -0.65 -10.77 16 9 C 0.07 1.26 4.65 -3.82 -0.02 1.25 16 10 C -0.06 -1.18 0.60 -154.50 -0.09 -1.27 16 11 C -0.11 -2.28 8.07 37.16 0.30 -1.98 16 12 C -0.13 -2.41 7.89 37.16 0.29 -2.12 16 13 C 0.03 0.86 4.04 -27.88 -0.11 0.74 16 14 C -0.51 -14.02 7.65 -34.44 -0.26 -14.29 16 15 H 0.06 1.58 5.68 -52.48 -0.30 1.28 16 16 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 17 N -0.90 -27.15 13.29 55.43 0.74 -26.41 16 18 Si 0.89 21.80 29.54 -169.99 -5.02 16.77 16 19 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 20 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 21 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 22 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 23 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 24 H 0.03 0.25 7.62 -51.93 -0.40 -0.15 16 25 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.06 0.52 7.62 -51.93 -0.40 0.13 16 27 H 0.09 0.82 8.10 -51.93 -0.42 0.40 16 28 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.03 0.36 8.14 -51.92 -0.42 -0.06 16 30 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.33 4.71 6.77 -39.29 -0.27 4.44 16 32 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 34 H 0.04 0.76 7.60 -51.93 -0.39 0.37 16 35 H 0.05 1.13 6.62 -51.93 -0.34 0.79 16 36 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.06 1.30 6.62 -51.93 -0.34 0.96 16 39 H 0.03 0.52 6.57 -51.93 -0.34 0.18 16 40 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 41 H 0.01 0.42 8.14 -51.93 -0.42 -0.01 16 42 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 326.39 15.07 4.92 4.92 Total: -1.00 -29.57 326.39 -9.25 -38.82 By element: Atomic # 1 Polarization: 7.61 SS G_CDS: -7.82 Total: -0.21 kcal Atomic # 6 Polarization: -16.22 SS G_CDS: 0.11 Total: -16.12 kcal Atomic # 7 Polarization: -42.76 SS G_CDS: -1.43 Total: -44.19 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -29.57 -9.25 -38.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712609320.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.331 kcal (2) G-P(sol) polarization free energy of solvation -29.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.820 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds