Wall clock time and date at job start Mon Mar 30 2020 17:53:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.47958 * 111.00220 * 2 1 4 4 C 1.53932 * 86.18213 * 222.41826 * 3 2 1 5 5 C 1.47960 * 110.99873 * 260.63998 * 2 1 3 6 6 H 1.09000 * 113.86370 * 23.25735 * 5 2 1 7 7 C 1.53001 * 113.75991 * 251.90104 * 5 2 1 8 8 N 1.46897 * 109.47148 * 78.44183 * 7 5 2 9 9 C 1.46897 * 110.99931 * 179.97438 * 8 7 5 10 10 C 1.53007 * 109.47060 * 179.97438 * 9 8 7 11 11 C 1.53003 * 109.47175 * 300.00423 * 10 9 8 12 12 C 1.53006 * 109.46944 * 60.00276 * 10 9 8 13 13 C 1.52994 * 109.47092 * 179.97438 * 10 9 8 14 14 C 1.50703 * 109.47183 * 179.97438 * 13 10 9 15 15 H 1.08005 * 119.99444 * 0.02562 * 14 13 10 16 16 C 1.37877 * 119.99976 * 180.02562 * 14 13 10 17 17 N 1.31505 * 120.00293 * 0.02562 * 16 14 13 18 18 Si 1.86805 * 119.99821 * 180.02562 * 16 14 13 19 19 H 1.48505 * 109.46970 * 89.99865 * 18 16 14 20 20 H 1.48493 * 109.46971 * 209.99910 * 18 16 14 21 21 H 1.48499 * 109.47057 * 330.00320 * 18 16 14 22 22 H 1.08996 * 109.46894 * 159.35448 * 1 2 3 23 23 H 1.09000 * 109.47098 * 279.36079 * 1 2 3 24 24 H 1.09000 * 109.46612 * 39.35673 * 1 2 3 25 25 H 1.09001 * 113.75711 * 108.10017 * 3 2 1 26 26 H 1.08998 * 113.76069 * 336.74148 * 3 2 1 27 27 H 1.09000 * 113.73222 * 269.35881 * 4 3 2 28 28 H 1.08998 * 113.73610 * 138.08290 * 4 3 2 29 29 H 1.09008 * 109.46951 * 198.44101 * 7 5 2 30 30 H 1.09002 * 109.47245 * 318.43865 * 7 5 2 31 31 H 1.00906 * 111.00025 * 56.04828 * 8 7 5 32 32 H 1.08996 * 109.47569 * 299.99879 * 9 8 7 33 33 H 1.08997 * 109.46960 * 60.00447 * 9 8 7 34 34 H 1.08997 * 109.46835 * 59.99699 * 11 10 9 35 35 H 1.08992 * 109.46796 * 180.02562 * 11 10 9 36 36 H 1.09000 * 109.46590 * 300.00032 * 11 10 9 37 37 H 1.08998 * 109.47010 * 59.99822 * 12 10 9 38 38 H 1.08994 * 109.46972 * 180.02562 * 12 10 9 39 39 H 1.09004 * 109.47043 * 300.00036 * 12 10 9 40 40 H 1.08996 * 109.47614 * 300.00009 * 13 10 9 41 41 H 1.09007 * 109.47047 * 60.00670 * 13 10 9 42 42 H 0.96995 * 120.00497 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9993 1.3813 0.0000 4 6 3.0211 0.8792 -1.0360 5 6 1.9992 -0.2247 -1.3629 6 1 1.3023 0.0434 -2.1570 7 6 2.6263 -1.6062 -1.5605 8 7 1.5643 -2.6037 -1.7477 9 6 2.1304 -3.9453 -1.9414 10 6 0.9964 -4.9548 -2.1319 11 6 0.0992 -4.9538 -0.8925 12 6 0.1701 -4.5677 -3.3600 13 6 1.5861 -6.3519 -2.3343 14 6 0.4692 -7.3463 -2.5213 15 1 -0.5584 -7.0146 -2.4985 16 6 0.7592 -8.6792 -2.7214 17 7 2.0104 -9.0831 -2.7487 18 14 -0.6252 -9.9116 -2.9539 19 1 -0.9524 -10.0219 -4.3983 20 1 -0.1986 -11.2380 -2.4404 21 1 -1.8253 -9.4546 -2.2081 22 1 -0.3633 -0.9616 -0.3623 23 1 -0.3633 0.1671 1.0140 24 1 -0.3632 0.7946 -0.6517 25 1 2.4461 1.6801 0.9483 26 1 1.3011 2.1198 -0.3939 27 1 3.9451 0.5051 -0.5952 28 1 3.1922 1.5758 -1.8568 29 1 3.2695 -1.5908 -2.4404 30 1 3.2179 -1.8657 -0.6825 31 1 0.9624 -2.3511 -2.5171 32 1 2.7699 -3.9459 -2.8241 33 1 2.7187 -4.2212 -1.0663 34 1 -0.3208 -3.9583 -0.7489 35 1 -0.7083 -5.6732 -1.0281 36 1 0.6880 -5.2295 -0.0176 37 1 0.8093 -4.5683 -4.2429 38 1 -0.6380 -5.2865 -3.4955 39 1 -0.2500 -3.5722 -3.2163 40 1 2.2249 -6.3523 -3.2174 41 1 2.1750 -6.6280 -1.4595 42 1 2.2145 -10.0207 -2.8899 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000712609320.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:53:41 Heat of formation + Delta-G solvation = -3.927364 kcal Electronic energy + Delta-G solvation = -17793.300146 eV Core-core repulsion = 15193.741679 eV Total energy + Delta-G solvation = -2599.558467 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.82693 -39.04454 -35.66633 -34.11908 -31.44515 -29.53952 -28.52090 -27.89073 -26.35384 -24.92632 -24.43400 -23.14517 -20.56986 -19.42463 -18.32915 -16.98285 -16.91187 -16.51870 -16.20884 -15.63156 -15.32360 -15.07000 -14.59119 -14.17634 -14.06898 -13.91039 -13.81880 -13.40397 -12.82737 -12.73102 -12.67347 -12.41924 -12.31545 -12.24632 -12.18157 -12.11886 -11.93193 -11.62445 -11.54659 -11.36253 -10.85525 -10.69322 -10.50241 -9.62624 -9.21438 -8.13576 -6.20824 1.40909 1.41845 1.52562 2.44110 2.98913 3.20244 3.30623 3.69159 3.98093 4.14923 4.20972 4.29583 4.37401 4.38504 4.44028 4.51424 4.60923 4.68795 4.77672 4.83567 4.84507 4.96004 4.97047 4.99314 5.08244 5.12659 5.21727 5.22307 5.31991 5.51772 5.54109 5.58012 5.59024 5.66058 5.88025 5.93088 6.11982 6.24502 6.37775 6.58788 6.94297 7.46558 8.98936 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.051994 B = 0.004329 C = 0.004174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 538.394611 B = 6466.606964 C = 6707.325180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.004 4.004 2 N -0.495 5.495 3 C -0.001 4.001 4 C -0.134 4.134 5 C 0.036 3.964 6 H 0.083 0.917 7 C 0.078 3.922 8 N -0.678 5.678 9 C 0.084 3.916 10 C -0.055 4.055 11 C -0.104 4.104 12 C -0.120 4.120 13 C 0.040 3.960 14 C -0.515 4.515 15 H 0.066 0.934 16 C -0.004 4.004 17 N -0.939 5.939 18 Si 0.957 3.043 19 H -0.274 1.274 20 H -0.287 1.287 21 H -0.263 1.263 22 H 0.064 0.936 23 H 0.065 0.935 24 H 0.040 0.960 25 H 0.089 0.911 26 H 0.079 0.921 27 H 0.088 0.912 28 H 0.088 0.912 29 H 0.038 0.962 30 H 0.063 0.937 31 H 0.340 0.660 32 H 0.017 0.983 33 H 0.050 0.950 34 H 0.066 0.934 35 H 0.038 0.962 36 H 0.026 0.974 37 H 0.037 0.963 38 H 0.046 0.954 39 H 0.067 0.933 40 H -0.016 1.016 41 H -0.018 1.018 42 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.488 21.326 1.867 21.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 N -0.218 5.218 3 C -0.129 4.129 4 C -0.172 4.172 5 C -0.073 4.073 6 H 0.101 0.899 7 C -0.051 4.051 8 N -0.310 5.310 9 C -0.045 4.045 10 C -0.055 4.055 11 C -0.161 4.161 12 C -0.178 4.178 13 C 0.002 3.998 14 C -0.553 4.553 15 H 0.084 0.916 16 C -0.201 4.201 17 N -0.580 5.580 18 Si 0.782 3.218 19 H -0.200 1.200 20 H -0.213 1.213 21 H -0.187 1.187 22 H 0.083 0.917 23 H 0.083 0.917 24 H 0.059 0.941 25 H 0.108 0.892 26 H 0.097 0.903 27 H 0.107 0.893 28 H 0.107 0.893 29 H 0.056 0.944 30 H 0.082 0.918 31 H 0.160 0.840 32 H 0.035 0.965 33 H 0.069 0.931 34 H 0.084 0.916 35 H 0.057 0.943 36 H 0.045 0.955 37 H 0.056 0.944 38 H 0.065 0.935 39 H 0.086 0.914 40 H 0.003 0.997 41 H 0.000 1.000 42 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -1.353 20.642 3.068 20.912 hybrid contribution -0.249 -0.748 -1.569 1.756 sum -1.602 19.893 1.499 20.014 Atomic orbital electron populations 1.22778 0.89335 1.01544 1.01645 1.68468 1.09768 1.18874 1.24714 1.23957 0.97460 0.91014 1.00499 1.23343 0.97789 0.96834 0.99235 1.23452 0.97350 0.94681 0.91840 0.89925 1.21845 0.92962 0.90377 0.99962 1.60458 1.20789 1.00940 1.48824 1.21779 0.95539 0.88869 0.98317 1.20489 0.95061 0.93882 0.96072 1.21466 0.98398 1.00475 0.95745 1.21669 0.99448 1.00427 0.96236 1.19009 0.94909 0.92034 0.93840 1.21623 0.93823 0.92684 1.47135 0.91601 1.25927 0.97677 1.00849 0.95653 1.70106 1.19627 1.16263 1.52002 0.85566 0.79628 0.78093 0.78508 1.19960 1.21251 1.18724 0.91712 0.91657 0.94130 0.89214 0.90271 0.89326 0.89301 0.94421 0.91814 0.84038 0.96452 0.93096 0.91559 0.94327 0.95494 0.94381 0.93456 0.91448 0.99738 0.99987 0.93154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 -0.08 9.65 127.69 1.23 1.15 16 2 N -0.50 -10.65 6.36 -909.96 -5.79 -16.43 16 3 C 0.00 -0.01 7.97 86.40 0.69 0.68 16 4 C -0.13 -2.02 7.85 31.24 0.25 -1.78 16 5 C 0.04 0.71 3.50 45.02 0.16 0.87 16 6 H 0.08 1.48 7.93 -2.39 -0.02 1.46 16 7 C 0.08 1.89 5.72 86.30 0.49 2.38 16 8 N -0.68 -19.13 5.71 -513.88 -2.94 -22.07 16 9 C 0.08 2.99 4.65 86.31 0.40 3.39 16 10 C -0.05 -2.22 0.60 -52.18 -0.03 -2.25 16 11 C -0.10 -4.09 8.07 71.98 0.58 -3.51 16 12 C -0.12 -4.38 7.89 71.98 0.57 -3.81 16 13 C 0.04 2.10 4.04 29.85 0.12 2.22 16 14 C -0.51 -28.93 7.65 25.60 0.20 -28.74 16 15 H 0.07 3.55 5.68 -2.91 -0.02 3.53 16 16 C 0.00 -0.26 5.46 84.66 0.46 0.21 16 17 N -0.94 -58.15 13.29 21.45 0.28 -57.86 16 18 Si 0.96 44.91 29.54 68.60 2.03 46.93 16 19 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 20 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 21 H -0.26 -11.77 7.11 99.48 0.71 -11.07 16 22 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 23 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 24 H 0.04 0.67 7.62 -2.39 -0.02 0.65 16 25 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 26 H 0.08 1.01 7.62 -2.39 -0.02 0.99 16 27 H 0.09 1.40 8.10 -2.39 -0.02 1.38 16 28 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.04 0.86 8.14 -2.38 -0.02 0.84 16 30 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 31 H 0.34 8.76 6.77 -89.69 -0.61 8.16 16 32 H 0.02 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 34 H 0.07 2.29 7.60 -2.39 -0.02 2.27 16 35 H 0.04 1.61 6.62 -2.39 -0.02 1.60 16 36 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 38 H 0.05 1.87 6.62 -2.39 -0.02 1.85 16 39 H 0.07 1.97 6.57 -2.38 -0.02 1.95 16 40 H -0.02 -0.91 8.14 -2.39 -0.02 -0.93 16 41 H -0.02 -1.08 8.14 -2.38 -0.02 -1.10 16 42 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 Total: -1.00 -64.28 326.39 -0.95 -65.23 By element: Atomic # 1 Polarization: 13.05 SS G_CDS: 0.35 Total: 13.40 kcal Atomic # 6 Polarization: -34.31 SS G_CDS: 5.11 Total: -29.20 kcal Atomic # 7 Polarization: -87.93 SS G_CDS: -8.44 Total: -96.36 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.93 kcal Total: -64.28 -0.95 -65.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000712609320.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.300 kcal (2) G-P(sol) polarization free energy of solvation -64.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds