Wall clock time and date at job start Mon Mar 30 2020 17:53:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86798 * 120.00050 * 2 1 4 4 H 1.48502 * 109.47192 * 270.00547 * 3 2 1 5 5 H 1.48497 * 109.47001 * 30.00882 * 3 2 1 6 6 H 1.48500 * 109.47186 * 150.00560 * 3 2 1 7 7 C 1.37875 * 119.99597 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99939 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00380 * 359.97438 * 7 2 1 10 10 C 1.53007 * 109.47005 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.46689 * 180.02562 * 10 9 7 12 12 O 1.42904 * 109.46727 * 180.02562 * 11 10 9 13 13 C 1.42895 * 113.99556 * 179.97438 * 12 11 10 14 14 C 1.53011 * 109.47375 * 269.99658 * 13 12 11 15 15 C 1.52985 * 109.46431 * 164.04795 * 14 13 12 16 16 C 1.52979 * 109.51242 * 315.98995 * 15 14 13 17 17 C 1.53011 * 109.47194 * 112.93104 * 16 15 14 18 18 C 1.53001 * 109.43349 * 284.04896 * 17 16 15 19 19 C 1.52978 * 109.48870 * 75.95853 * 18 17 16 20 20 C 1.52997 * 109.50968 * 247.06642 * 19 18 17 21 21 H 0.97003 * 119.99513 * 359.97438 * 1 2 3 22 22 H 1.08999 * 109.46899 * 60.00178 * 9 7 2 23 23 H 1.08994 * 109.47266 * 300.00051 * 9 7 2 24 24 H 1.08999 * 109.47041 * 60.00393 * 10 9 7 25 25 H 1.08992 * 109.47227 * 299.99648 * 10 9 7 26 26 H 1.08992 * 109.47643 * 60.00209 * 11 10 9 27 27 H 1.09008 * 109.47073 * 299.99836 * 11 10 9 28 28 H 1.09000 * 109.47411 * 29.99900 * 13 12 11 29 29 H 1.09009 * 109.47496 * 284.04929 * 14 13 12 30 30 H 1.09004 * 109.47394 * 44.04779 * 14 13 12 31 31 H 1.08999 * 109.46900 * 195.97803 * 15 14 13 32 32 H 1.09005 * 109.46285 * 76.00405 * 15 14 13 33 33 H 1.08998 * 109.46983 * 352.93701 * 16 15 14 34 34 H 1.08996 * 109.47176 * 232.93362 * 16 15 14 35 35 H 1.08997 * 109.47684 * 164.05491 * 17 16 15 36 36 H 1.09000 * 109.48073 * 44.04027 * 17 16 15 37 37 H 1.09005 * 109.46882 * 315.95485 * 18 17 16 38 38 H 1.09001 * 109.46405 * 195.96786 * 18 17 16 39 39 H 1.08999 * 109.47119 * 127.05339 * 19 18 17 40 40 H 1.09005 * 109.46139 * 7.07099 * 19 18 17 41 41 H 1.09000 * 109.47441 * 284.01870 * 20 19 18 42 42 H 1.08994 * 109.47774 * 164.00526 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4468 2.6526 0.7002 6 1 3.5468 1.4401 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0018 11 6 1.4802 -4.9871 -0.0025 12 8 2.4089 -6.0733 -0.0031 13 6 1.7942 -7.3633 -0.0031 14 6 1.5755 -7.8242 1.4394 15 6 0.5821 -8.9875 1.4579 16 6 -0.5883 -8.6748 0.5237 17 6 -0.5623 -9.6366 -0.6661 18 6 0.5384 -9.2117 -1.6401 19 6 1.9021 -9.6164 -1.0772 20 6 2.7025 -8.3610 -0.7250 21 1 -0.4849 0.8401 0.0004 22 1 0.6241 -2.5567 -0.8903 23 1 0.6247 -2.5571 0.8896 24 1 2.8726 -3.6048 0.8877 25 1 2.8712 -3.6040 -0.8922 26 1 0.8532 -5.0443 -0.8921 27 1 0.8539 -5.0455 0.8878 28 1 0.8343 -7.3085 -0.5165 29 1 2.5248 -8.1501 1.8648 30 1 1.1781 -6.9977 2.0287 31 1 0.2091 -9.1307 2.4720 32 1 1.0814 -9.8968 1.1229 33 1 -0.5021 -7.6495 0.1639 34 1 -1.5268 -8.7922 1.0654 35 1 -1.5264 -9.6125 -1.1740 36 1 -0.3635 -10.6480 -0.3116 37 1 0.5072 -8.1304 -1.7744 38 1 0.3820 -9.7018 -2.6011 39 1 2.4456 -10.1962 -1.8233 40 1 1.7604 -10.2201 -0.1808 41 1 3.0871 -7.9071 -1.6384 42 1 3.5347 -8.6310 -0.0751 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000721061761.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:53:43 Heat of formation + Delta-G solvation = -93.440768 kcal Electronic energy + Delta-G solvation = -17785.981719 eV Core-core repulsion = 15150.248909 eV Total energy + Delta-G solvation = -2635.732810 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.183 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.78698 -38.10105 -35.86505 -33.85959 -33.72994 -32.62376 -28.73359 -26.88243 -26.73287 -24.77121 -22.96507 -22.06418 -21.56542 -20.30437 -18.62171 -17.90876 -16.86074 -16.52269 -16.44096 -15.43414 -15.23586 -15.00271 -14.95484 -14.53585 -14.21496 -14.16036 -13.72296 -13.49720 -12.86812 -12.80627 -12.63684 -12.51593 -12.29466 -12.23048 -12.00307 -11.98751 -11.72403 -11.64523 -11.52877 -11.30977 -11.18650 -10.92815 -10.63606 -10.57525 -10.23589 -8.22417 -6.33787 1.39896 1.41599 1.53033 2.39466 2.76041 3.10887 3.62683 3.88707 3.98486 4.11844 4.14305 4.18556 4.22662 4.25559 4.32451 4.34607 4.41368 4.57086 4.67268 4.80678 4.87528 4.90237 4.96565 5.00474 5.03176 5.06672 5.13478 5.15523 5.21812 5.24429 5.32888 5.36528 5.46816 5.47510 5.57284 5.63655 5.67252 5.80396 6.19331 6.41189 6.81607 7.35500 8.89777 Molecular weight = 240.18amu Principal moments of inertia in cm(-1) A = 0.042574 B = 0.004037 C = 0.003943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.518498 B = 6934.557414 C = 7099.633182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.001 3.999 3 Si 0.968 3.032 4 H -0.271 1.271 5 H -0.279 1.279 6 H -0.264 1.264 7 C -0.547 4.547 8 H 0.059 0.941 9 C 0.028 3.972 10 C -0.096 4.096 11 C 0.076 3.924 12 O -0.404 6.404 13 C 0.059 3.941 14 C -0.139 4.139 15 C -0.118 4.118 16 C -0.136 4.136 17 C -0.115 4.115 18 C -0.135 4.135 19 C -0.117 4.117 20 C -0.114 4.114 21 H 0.265 0.735 22 H -0.004 1.004 23 H -0.004 1.004 24 H 0.052 0.948 25 H 0.053 0.947 26 H 0.044 0.956 27 H 0.043 0.957 28 H 0.085 0.915 29 H 0.068 0.932 30 H 0.046 0.954 31 H 0.067 0.933 32 H 0.089 0.911 33 H 0.052 0.948 34 H 0.066 0.934 35 H 0.064 0.936 36 H 0.079 0.921 37 H 0.053 0.947 38 H 0.071 0.929 39 H 0.075 0.925 40 H 0.085 0.915 41 H 0.057 0.943 42 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.682 -22.082 -0.427 22.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.197 4.197 3 Si 0.792 3.208 4 H -0.196 1.196 5 H -0.205 1.205 6 H -0.188 1.188 7 C -0.584 4.584 8 H 0.077 0.923 9 C -0.009 4.009 10 C -0.134 4.134 11 C 0.000 4.000 12 O -0.324 6.324 13 C 0.003 3.997 14 C -0.177 4.177 15 C -0.155 4.155 16 C -0.173 4.173 17 C -0.152 4.152 18 C -0.172 4.172 19 C -0.154 4.154 20 C -0.151 4.151 21 H 0.074 0.926 22 H 0.015 0.985 23 H 0.014 0.986 24 H 0.071 0.929 25 H 0.072 0.928 26 H 0.062 0.938 27 H 0.061 0.939 28 H 0.102 0.898 29 H 0.087 0.913 30 H 0.065 0.935 31 H 0.086 0.914 32 H 0.107 0.893 33 H 0.070 0.930 34 H 0.085 0.915 35 H 0.082 0.918 36 H 0.097 0.903 37 H 0.072 0.928 38 H 0.089 0.911 39 H 0.094 0.906 40 H 0.103 0.897 41 H 0.076 0.924 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 0.737 -21.953 -0.422 21.970 hybrid contribution -0.090 1.288 0.081 1.294 sum 0.647 -20.665 -0.341 20.678 Atomic orbital electron populations 1.70095 1.07779 1.27916 1.51453 1.25985 0.95819 1.03380 0.94490 0.85406 0.78616 0.78187 0.78603 1.19613 1.20462 1.18847 1.21648 0.93559 0.92260 1.50980 0.92291 1.18920 0.94205 0.92560 0.95214 1.21396 0.98596 0.92267 1.01127 1.22439 0.91736 0.86434 0.99389 1.87865 1.34727 1.14616 1.95188 1.22980 0.97829 0.82471 0.96452 1.22091 1.00410 0.98806 0.96423 1.21797 0.95489 0.98182 1.00043 1.21876 0.98700 0.99535 0.97179 1.21698 0.98610 0.99325 0.95558 1.21876 0.95023 1.00985 0.99325 1.21806 0.95312 0.96254 1.02046 1.21675 0.98203 0.95205 1.00041 0.92624 0.98535 0.98580 0.92918 0.92813 0.93781 0.93903 0.89763 0.91300 0.93494 0.91399 0.89321 0.92993 0.91504 0.91774 0.90255 0.92820 0.91070 0.90587 0.89654 0.92392 0.91243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.46 13.29 21.45 0.28 -57.17 16 2 C 0.00 0.07 5.46 84.65 0.46 0.53 16 3 Si 0.97 45.00 29.54 68.60 2.03 47.03 16 4 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 5 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 6 H -0.26 -11.80 7.11 99.48 0.71 -11.10 16 7 C -0.55 -32.23 9.11 25.60 0.23 -31.99 16 8 H 0.06 3.36 7.74 -2.91 -0.02 3.34 16 9 C 0.03 1.55 4.97 29.85 0.15 1.70 16 10 C -0.10 -4.36 5.52 30.60 0.17 -4.19 16 11 C 0.08 2.93 5.72 71.98 0.41 3.34 16 12 O -0.40 -14.27 9.99 -148.98 -1.49 -15.76 16 13 C 0.06 1.57 2.01 30.60 0.06 1.63 16 14 C -0.14 -3.31 5.34 30.59 0.16 -3.14 16 15 C -0.12 -2.09 5.48 30.58 0.17 -1.92 16 16 C -0.14 -2.48 5.47 30.59 0.17 -2.31 16 17 C -0.11 -1.72 5.59 30.60 0.17 -1.55 16 18 C -0.13 -2.26 5.47 30.59 0.17 -2.10 16 19 C -0.12 -1.87 5.48 30.59 0.17 -1.70 16 20 C -0.11 -2.49 5.36 30.60 0.16 -2.33 16 21 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 22 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 23 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 24 H 0.05 2.38 8.14 -2.39 -0.02 2.36 16 25 H 0.05 2.42 8.14 -2.39 -0.02 2.40 16 26 H 0.04 1.64 8.08 -2.39 -0.02 1.62 16 27 H 0.04 1.61 7.71 -2.38 -0.02 1.59 16 28 H 0.09 2.22 2.47 -2.39 -0.01 2.21 16 29 H 0.07 1.57 7.82 -2.38 -0.02 1.55 16 30 H 0.05 1.28 7.67 -2.39 -0.02 1.26 16 31 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.09 1.29 4.69 -2.38 -0.01 1.28 16 33 H 0.05 1.17 5.47 -2.39 -0.01 1.16 16 34 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.08 0.96 7.47 -2.39 -0.02 0.94 16 37 H 0.05 1.13 5.47 -2.38 -0.01 1.12 16 38 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 39 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 40 H 0.09 1.17 4.69 -2.38 -0.01 1.16 16 41 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 42 H 0.07 1.47 7.82 -2.39 -0.02 1.45 16 Total: -1.00 -64.87 311.99 4.45 -60.43 By element: Atomic # 1 Polarization: 8.54 SS G_CDS: 0.97 Total: 9.51 kcal Atomic # 6 Polarization: -46.69 SS G_CDS: 2.65 Total: -44.04 kcal Atomic # 7 Polarization: -57.46 SS G_CDS: 0.28 Total: -57.17 kcal Atomic # 8 Polarization: -14.27 SS G_CDS: -1.49 Total: -15.76 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.03 kcal Total: -64.87 4.45 -60.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000721061761.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.014 kcal (2) G-P(sol) polarization free energy of solvation -64.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds