Wall clock time and date at job start Mon Mar 30 2020 17:53:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46896 * 111.00411 * 2 1 4 4 C 1.46908 * 110.99649 * 123.95309 * 2 1 3 5 5 C 1.50698 * 112.90590 * 312.96083 * 4 2 1 6 6 O 1.21277 * 120.00351 * 122.09134 * 5 4 2 7 7 N 1.34776 * 119.99642 * 302.08062 * 5 4 2 8 8 C 1.46507 * 119.99974 * 184.37337 * 7 5 4 9 9 C 1.52996 * 109.47256 * 180.02562 * 8 7 5 10 10 C 1.50701 * 109.46876 * 179.97438 * 9 8 7 11 11 H 1.08001 * 120.00497 * 0.02562 * 10 9 8 12 12 C 1.37886 * 119.99694 * 179.97438 * 10 9 8 13 13 N 1.31514 * 120.00043 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 119.99783 * 180.02562 * 12 10 9 15 15 H 1.48490 * 109.47492 * 89.99675 * 14 12 10 16 16 H 1.48499 * 109.46735 * 210.00125 * 14 12 10 17 17 H 1.48500 * 109.46748 * 329.99493 * 14 12 10 18 18 C 1.53784 * 113.61076 * 181.70829 * 4 2 1 19 19 C 1.53788 * 87.07823 * 220.01760 * 18 4 2 20 20 C 1.53788 * 87.17255 * 25.39237 * 19 18 4 21 21 H 1.08998 * 109.47340 * 294.00318 * 1 2 3 22 22 H 1.09001 * 109.46825 * 53.99501 * 1 2 3 23 23 H 1.08995 * 109.47650 * 173.99603 * 1 2 3 24 24 H 1.09000 * 109.47146 * 183.95094 * 3 2 1 25 25 H 1.09001 * 109.47194 * 303.95281 * 3 2 1 26 26 H 1.09004 * 109.47287 * 63.95284 * 3 2 1 27 27 H 0.96998 * 120.00309 * 4.38023 * 7 5 4 28 28 H 1.09002 * 109.46444 * 300.00551 * 8 7 5 29 29 H 1.08994 * 109.47202 * 60.00018 * 8 7 5 30 30 H 1.09000 * 109.46953 * 299.99729 * 9 8 7 31 31 H 1.09003 * 109.47514 * 59.99854 * 9 8 7 32 32 H 0.96992 * 119.99671 * 180.02562 * 13 12 10 33 33 H 1.08996 * 113.61193 * 105.47139 * 18 4 2 34 34 H 1.08995 * 113.68932 * 334.57430 * 18 4 2 35 35 H 1.09001 * 113.61324 * 139.97921 * 19 18 4 36 36 H 1.08993 * 113.61564 * 270.80340 * 19 18 4 37 37 H 1.08994 * 113.61329 * 89.15449 * 20 19 18 38 38 H 1.09002 * 113.61084 * 220.06240 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7660 1.1377 5 6 1.3223 -0.4185 2.4405 6 8 0.7659 -1.2822 3.0849 7 7 1.3390 0.8521 2.8896 8 6 0.7691 1.1732 4.2005 9 6 0.9146 2.6729 4.4664 10 6 0.3278 3.0032 5.8146 11 1 -0.1052 2.2217 6.4213 12 6 0.3447 4.3031 6.2740 13 7 0.8725 5.2548 5.5355 14 14 -0.3820 4.7125 7.9455 15 1 0.6710 4.5936 8.9857 16 1 -0.9079 6.1011 7.9298 17 1 -1.4870 3.7681 8.2494 18 6 3.5310 -0.7705 1.2195 19 6 3.4268 -2.2511 1.6220 20 6 2.0825 -2.2806 0.8755 21 1 -0.3634 0.4180 0.9388 22 1 -0.3633 0.6041 -0.8314 23 1 -0.3634 -1.0219 -0.1075 24 1 3.0828 1.3431 -0.0708 25 1 1.5899 1.9163 -0.8524 26 1 1.7045 1.8723 0.9233 27 1 1.7282 1.5540 2.3448 28 1 -0.2868 0.9030 4.2136 29 1 1.2968 0.6140 4.9730 30 1 1.9704 2.9434 4.4531 31 1 0.3866 3.2319 3.6939 32 1 0.8847 6.1691 5.8589 33 1 3.9281 -0.1307 2.0076 34 1 4.0212 -0.6127 0.2589 35 1 4.1917 -2.8816 1.1689 36 1 3.3328 -2.4058 2.6968 37 1 2.1748 -2.5364 -0.1800 38 1 1.3120 -2.8581 1.3863 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000752842388.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:53:47 Heat of formation + Delta-G solvation = -13.424248 kcal Electronic energy + Delta-G solvation = -17933.068337 eV Core-core repulsion = 15197.264960 eV Total energy + Delta-G solvation = -2735.803377 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.83926 -37.48759 -35.64869 -34.63214 -32.83504 -29.75676 -27.95674 -26.53683 -25.34984 -24.75310 -22.54405 -21.49824 -20.83240 -18.90951 -16.86863 -16.42404 -16.16623 -15.40514 -14.84248 -14.69531 -14.60639 -14.35871 -13.87313 -13.49042 -12.98153 -12.53894 -12.36767 -12.24721 -12.14657 -11.71987 -11.65684 -11.22284 -11.07194 -10.91703 -10.70149 -10.66489 -10.38708 -10.28671 -9.93772 -9.57577 -9.33557 -8.59527 -8.40658 -8.35105 -6.13024 -4.16187 2.82984 3.26967 3.33005 3.36803 3.54286 3.92205 4.38572 4.41109 4.59662 4.77368 4.87571 5.04271 5.23992 5.29077 5.39047 5.49259 5.59024 5.71483 5.73751 5.85090 5.85935 5.91733 6.06641 6.13485 6.26492 6.28397 6.32239 6.67686 6.82251 6.86535 6.90841 7.45736 7.55370 7.84587 7.94272 8.23161 8.56242 8.89520 9.48909 10.98584 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.036369 B = 0.005271 C = 0.005049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 769.702704 B = 5310.839972 C = 5543.798942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.515 5.515 3 C 0.008 3.992 4 C 0.054 3.946 5 C 0.504 3.496 6 O -0.543 6.543 7 N -0.723 5.723 8 C 0.118 3.882 9 C 0.014 3.986 10 C -0.522 4.522 11 H 0.059 0.941 12 C 0.060 3.940 13 N -0.894 5.894 14 Si 0.897 3.103 15 H -0.279 1.279 16 H -0.285 1.285 17 H -0.272 1.272 18 C -0.121 4.121 19 C -0.141 4.141 20 C -0.104 4.104 21 H 0.034 0.966 22 H 0.072 0.928 23 H 0.071 0.929 24 H 0.075 0.925 25 H 0.075 0.925 26 H 0.035 0.965 27 H 0.395 0.605 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.022 0.978 31 H 0.021 0.979 32 H 0.262 0.738 33 H 0.071 0.929 34 H 0.098 0.902 35 H 0.073 0.927 36 H 0.082 0.918 37 H 0.093 0.907 38 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.467 -9.635 -12.296 16.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 N -0.239 5.239 3 C -0.140 4.140 4 C -0.039 4.039 5 C 0.287 3.713 6 O -0.420 6.420 7 N -0.377 5.377 8 C -0.004 4.004 9 C -0.023 4.023 10 C -0.561 4.561 11 H 0.077 0.923 12 C -0.142 4.142 13 N -0.533 5.533 14 Si 0.725 3.275 15 H -0.205 1.205 16 H -0.211 1.211 17 H -0.197 1.197 18 C -0.159 4.159 19 C -0.179 4.179 20 C -0.143 4.143 21 H 0.053 0.947 22 H 0.090 0.910 23 H 0.089 0.911 24 H 0.094 0.906 25 H 0.094 0.906 26 H 0.053 0.947 27 H 0.234 0.766 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.040 0.960 31 H 0.039 0.961 32 H 0.072 0.928 33 H 0.090 0.910 34 H 0.116 0.884 35 H 0.092 0.908 36 H 0.101 0.899 37 H 0.112 0.888 38 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 4.251 -10.262 -12.233 16.523 hybrid contribution -0.545 1.271 1.423 1.984 sum 3.705 -8.990 -10.810 14.540 Atomic orbital electron populations 1.22477 0.86941 1.02721 1.01179 1.62513 1.08469 1.13892 1.38989 1.22683 1.01397 0.88757 1.01194 1.22950 0.96332 0.97329 0.87272 1.20801 0.80464 0.83028 0.86958 1.90647 1.44445 1.48095 1.58785 1.46923 1.60686 1.08551 1.21567 1.21754 0.97375 0.99874 0.81378 1.19309 0.97791 0.87626 0.97622 1.21041 1.39174 0.93703 1.02180 0.92254 1.24998 0.95240 0.96301 0.97690 1.69952 1.44935 1.00992 1.37400 0.86500 0.79477 0.77656 0.83878 1.20508 1.21114 1.19718 1.23036 0.92471 0.97790 1.02617 1.22759 0.97827 0.96175 1.01099 1.22845 0.97970 0.92340 1.01115 0.94704 0.90965 0.91065 0.90610 0.90612 0.94720 0.76562 0.92606 0.92575 0.96018 0.96108 0.92804 0.91025 0.88382 0.90794 0.89900 0.88826 0.90197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.19 9.21 60.06 0.55 0.74 16 2 N -0.51 -6.38 4.95 -235.69 -1.17 -7.55 16 3 C 0.01 0.09 9.06 60.06 0.54 0.63 16 4 C 0.05 0.74 0.61 -131.84 -0.08 0.66 16 5 C 0.50 8.92 4.90 -10.99 -0.05 8.86 16 6 O -0.54 -11.44 15.89 5.56 0.09 -11.35 16 7 N -0.72 -13.22 5.26 -60.29 -0.32 -13.54 16 8 C 0.12 2.58 5.62 -4.04 -0.02 2.56 16 9 C 0.01 0.35 5.09 -27.88 -0.14 0.21 16 10 C -0.52 -14.58 9.11 -34.44 -0.31 -14.89 16 11 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 12 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 13 N -0.89 -26.10 13.29 55.43 0.74 -25.37 16 14 Si 0.90 21.39 29.54 -169.99 -5.02 16.37 16 15 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 16 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 17 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 18 C -0.12 -1.40 6.16 -25.91 -0.16 -1.56 16 19 C -0.14 -1.61 7.80 -25.91 -0.20 -1.81 16 20 C -0.10 -1.29 7.28 -25.82 -0.19 -1.48 16 21 H 0.03 0.52 6.79 -51.93 -0.35 0.17 16 22 H 0.07 0.77 8.09 -51.93 -0.42 0.35 16 23 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 24 H 0.08 0.74 6.95 -51.93 -0.36 0.38 16 25 H 0.08 0.74 8.10 -51.93 -0.42 0.32 16 26 H 0.03 0.44 4.80 -51.93 -0.25 0.20 16 27 H 0.40 6.57 5.06 -40.82 -0.21 6.36 16 28 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 29 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 30 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 33 H 0.07 0.87 8.09 -51.93 -0.42 0.45 16 34 H 0.10 0.96 7.79 -51.93 -0.40 0.55 16 35 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 37 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.08 1.12 7.35 -51.93 -0.38 0.74 16 LS Contribution 304.73 15.07 4.59 4.59 Total: -1.00 -30.87 304.73 -7.39 -38.26 By element: Atomic # 1 Polarization: 9.21 SS G_CDS: -6.14 Total: 3.07 kcal Atomic # 6 Polarization: -4.33 SS G_CDS: -0.16 Total: -4.49 kcal Atomic # 7 Polarization: -45.71 SS G_CDS: -0.75 Total: -46.45 kcal Atomic # 8 Polarization: -11.44 SS G_CDS: 0.09 Total: -11.35 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -30.87 -7.39 -38.26 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000752842388.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.832 kcal (2) G-P(sol) polarization free energy of solvation -30.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds