Wall clock time and date at job start Mon Mar 30 2020 17:53:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.50707 * 119.99744 * 2 1 4 4 C 1.53006 * 109.46824 * 294.99382 * 3 2 1 5 5 C 1.52996 * 109.46786 * 180.02562 * 4 3 2 6 6 C 1.50704 * 109.47144 * 180.02562 * 5 4 3 7 7 H 1.08000 * 119.99758 * 0.02562 * 6 5 4 8 8 C 1.37875 * 120.00019 * 179.97438 * 6 5 4 9 9 N 1.31512 * 120.00078 * 0.02562 * 8 6 5 10 10 Si 1.86807 * 119.99826 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.46736 * 0.02562 * 10 8 6 12 12 H 1.48493 * 109.47150 * 120.00176 * 10 8 6 13 13 H 1.48493 * 109.47087 * 240.00367 * 10 8 6 14 14 N 1.28010 * 120.00356 * 179.97438 * 2 1 3 15 15 N 1.40101 * 119.99782 * 354.73957 * 14 2 1 16 16 C 1.47154 * 120.97974 * 114.10547 * 15 14 2 17 17 C 1.53291 * 108.38282 * 129.44797 * 16 15 14 18 18 O 1.42959 * 109.26820 * 52.27433 * 17 16 15 19 19 C 1.42958 * 114.17106 * 297.50003 * 18 17 16 20 20 C 1.47155 * 120.98253 * 294.08548 * 15 14 2 21 21 H 1.09000 * 109.46839 * 268.02071 * 1 2 3 22 22 H 1.08995 * 109.47164 * 28.01828 * 1 2 3 23 23 H 1.08996 * 109.46883 * 148.01975 * 1 2 3 24 24 H 1.08995 * 109.47281 * 54.99998 * 3 2 1 25 25 H 1.09001 * 109.46869 * 175.00385 * 3 2 1 26 26 H 1.08995 * 109.47694 * 300.00363 * 4 3 2 27 27 H 1.09001 * 109.46578 * 60.00825 * 4 3 2 28 28 H 1.09003 * 109.47437 * 300.00315 * 5 4 3 29 29 H 1.09001 * 109.47309 * 60.00318 * 5 4 3 30 30 H 0.97004 * 119.99862 * 179.97438 * 9 8 6 31 31 H 1.08994 * 109.68211 * 9.71852 * 16 15 14 32 32 H 1.09004 * 109.71345 * 249.18469 * 16 15 14 33 33 H 1.09000 * 109.51471 * 172.23227 * 17 16 15 34 34 H 1.09004 * 109.50862 * 292.32307 * 17 16 15 35 35 H 1.09000 * 109.47689 * 302.57778 * 19 18 17 36 36 H 1.08996 * 109.55523 * 182.47338 * 19 18 17 37 37 H 1.08995 * 109.68209 * 350.28128 * 20 15 14 38 38 H 1.09003 * 109.67922 * 110.83511 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3052 0.0000 4 6 1.9876 2.0516 -1.3075 5 6 2.7530 3.3763 -1.3078 6 6 2.4838 4.1118 -2.5953 7 1 1.8316 3.6779 -3.3388 8 6 3.0692 5.3390 -2.8236 9 7 3.8630 5.8676 -1.9180 10 14 2.7360 6.2503 -4.4198 11 1 1.8165 5.4474 -5.2655 12 1 2.1113 7.5634 -4.1190 13 1 4.0147 6.4647 -5.1436 14 7 2.1472 -1.1086 0.0005 15 7 1.4511 -2.3193 0.1123 16 6 1.4287 -3.2853 -0.9975 17 6 1.8167 -4.6626 -0.4475 18 8 0.9918 -4.9703 0.6788 19 6 1.1439 -4.0703 1.7790 20 6 0.7213 -2.6626 1.3431 21 1 -0.3633 -0.0355 1.0271 22 1 -0.3633 0.9072 -0.4827 23 1 -0.3633 -0.8717 -0.5443 24 1 1.9317 1.9145 0.8418 25 1 3.3288 1.1080 0.0895 26 1 2.3164 1.4422 -2.1493 27 1 0.9193 2.2488 -1.3970 28 1 2.4246 3.9859 -0.4659 29 1 3.8213 3.1787 -1.2183 30 1 4.2752 6.7308 -2.0788 31 1 2.1423 -2.9814 -1.7633 32 1 0.4273 -3.3300 -1.4259 33 1 1.6733 -5.4171 -1.2209 34 1 2.8625 -4.6504 -0.1404 35 1 2.1869 -4.0557 2.0951 36 1 0.5168 -4.3983 2.6080 37 1 0.9664 -1.9463 2.1272 38 1 -0.3515 -2.6444 1.1509 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000841605567.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:53:52 Heat of formation + Delta-G solvation = -11.533075 kcal Electronic energy + Delta-G solvation = -17016.858643 eV Core-core repulsion = 14281.137273 eV Total energy + Delta-G solvation = -2735.721370 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.34619 -37.39388 -34.72031 -33.10481 -31.56872 -31.40119 -28.91712 -27.35580 -25.76056 -24.19444 -23.48682 -21.18422 -20.15413 -18.48848 -16.48743 -16.37434 -16.12796 -15.41022 -15.28341 -15.21800 -14.55683 -14.39890 -13.99410 -13.57776 -13.27833 -12.56477 -12.39421 -11.99551 -11.91207 -11.70403 -11.56177 -11.41421 -11.05906 -10.83547 -10.72213 -10.63340 -10.44657 -9.85001 -9.69612 -9.60731 -9.27773 -9.01241 -8.34293 -7.48247 -5.99348 -4.01483 2.27601 2.80820 3.31505 3.39071 3.43167 3.66696 4.46629 4.70366 4.77555 4.92307 4.93344 5.08261 5.12250 5.27042 5.34981 5.36700 5.41891 5.44910 5.52944 5.60797 5.65385 5.81313 5.90424 6.00659 6.12752 6.30364 6.66640 6.82914 6.86381 6.93258 7.11403 7.20078 7.68682 7.82779 8.00969 8.43365 8.65046 9.05818 9.62621 11.12017 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.053546 B = 0.003709 C = 0.003628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 522.786973 B = 7546.391848 C = 7714.900853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.133 3.867 3 C -0.071 4.071 4 C -0.101 4.101 5 C 0.021 3.979 6 C -0.519 4.519 7 H 0.055 0.945 8 C 0.056 3.944 9 N -0.895 5.895 10 Si 0.891 3.109 11 H -0.273 1.273 12 H -0.284 1.284 13 H -0.284 1.284 14 N -0.264 5.264 15 N -0.589 5.589 16 C 0.123 3.877 17 C 0.050 3.950 18 O -0.385 6.385 19 C 0.052 3.948 20 C 0.105 3.895 21 H 0.070 0.930 22 H 0.081 0.919 23 H 0.066 0.934 24 H 0.080 0.920 25 H 0.078 0.922 26 H 0.050 0.950 27 H 0.050 0.950 28 H 0.017 0.983 29 H 0.018 0.982 30 H 0.260 0.740 31 H 0.083 0.917 32 H 0.049 0.951 33 H 0.098 0.902 34 H 0.056 0.944 35 H 0.055 0.945 36 H 0.097 0.903 37 H 0.075 0.925 38 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.609 -17.903 6.280 20.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.060 4.060 3 C -0.111 4.111 4 C -0.140 4.140 5 C -0.017 4.017 6 C -0.558 4.558 7 H 0.073 0.927 8 C -0.145 4.145 9 N -0.535 5.535 10 Si 0.719 3.281 11 H -0.198 1.198 12 H -0.210 1.210 13 H -0.210 1.210 14 N -0.063 5.063 15 N -0.410 5.410 16 C -0.001 4.001 17 C -0.028 4.028 18 O -0.304 6.304 19 C -0.026 4.026 20 C -0.020 4.020 21 H 0.089 0.911 22 H 0.099 0.901 23 H 0.085 0.915 24 H 0.099 0.901 25 H 0.097 0.903 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.036 0.964 29 H 0.036 0.964 30 H 0.069 0.931 31 H 0.102 0.898 32 H 0.067 0.933 33 H 0.116 0.884 34 H 0.074 0.926 35 H 0.073 0.927 36 H 0.115 0.885 37 H 0.094 0.906 38 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -5.777 -18.430 6.269 20.306 hybrid contribution -0.893 1.097 -0.779 1.614 sum -6.669 -17.333 5.490 19.366 Atomic orbital electron populations 1.21472 0.93507 1.03769 1.02455 1.26211 0.94518 0.95857 0.89433 1.20731 0.99906 0.89472 1.00953 1.21598 1.00601 0.98276 0.93512 1.19117 0.95374 0.90059 0.97109 1.21290 1.28245 1.03306 1.02942 0.92677 1.25022 0.95213 0.97564 0.96684 1.69973 1.31364 1.17934 1.34216 0.86556 0.78047 0.79721 0.83807 1.19763 1.21036 1.21016 1.75248 1.23220 0.91291 1.16588 1.49843 1.63009 1.13729 1.14460 1.21786 1.00797 0.88065 0.89496 1.23002 0.94545 0.96443 0.88840 1.87898 1.65026 1.52189 1.25258 1.22937 1.01268 0.89306 0.89090 1.22054 0.95379 0.96526 0.88035 0.91150 0.90064 0.91483 0.90128 0.90312 0.93146 0.93089 0.96449 0.96386 0.93072 0.89813 0.93284 0.88351 0.92568 0.92706 0.88467 0.90638 0.93262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 8.74 36.01 0.31 -1.66 16 2 C 0.13 2.03 6.40 -78.91 -0.50 1.52 16 3 C -0.07 -1.19 5.60 -27.88 -0.16 -1.35 16 4 C -0.10 -2.03 5.03 -26.73 -0.13 -2.16 16 5 C 0.02 0.52 4.97 -27.88 -0.14 0.38 16 6 C -0.52 -14.64 9.11 -34.44 -0.31 -14.95 16 7 H 0.05 1.51 7.74 -52.49 -0.41 1.11 16 8 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 9 N -0.90 -26.84 13.29 55.43 0.74 -26.11 16 10 Si 0.89 21.61 29.54 -169.99 -5.02 16.59 16 11 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 12 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 13 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 14 N -0.26 -4.21 11.19 35.60 0.40 -3.81 16 15 N -0.59 -8.02 2.67 -113.06 -0.30 -8.32 16 16 C 0.12 1.45 7.01 -3.53 -0.02 1.43 16 17 C 0.05 0.51 6.98 37.31 0.26 0.77 16 18 O -0.39 -4.45 10.74 -35.23 -0.38 -4.83 16 19 C 0.05 0.52 6.98 37.31 0.26 0.78 16 20 C 0.11 1.19 5.70 -3.53 -0.02 1.17 16 21 H 0.07 0.80 8.10 -51.93 -0.42 0.38 16 22 H 0.08 1.05 6.92 -51.93 -0.36 0.69 16 23 H 0.07 0.88 7.37 -51.93 -0.38 0.49 16 24 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 25 H 0.08 1.37 8.11 -51.93 -0.42 0.95 16 26 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 27 H 0.05 0.98 7.02 -51.93 -0.36 0.61 16 28 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 31 H 0.08 1.01 8.13 -51.93 -0.42 0.59 16 32 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 35 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.08 0.83 8.13 -51.93 -0.42 0.41 16 38 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 311.98 15.07 4.70 4.70 Total: -1.00 -31.26 311.98 -6.98 -38.25 By element: Atomic # 1 Polarization: 2.65 SS G_CDS: -6.56 Total: -3.92 kcal Atomic # 6 Polarization: -12.00 SS G_CDS: -0.55 Total: -12.55 kcal Atomic # 7 Polarization: -39.08 SS G_CDS: 0.83 Total: -38.24 kcal Atomic # 8 Polarization: -4.45 SS G_CDS: -0.38 Total: -4.83 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -31.26 -6.98 -38.25 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841605567.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.713 kcal (2) G-P(sol) polarization free energy of solvation -31.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds