Wall clock time and date at job start Mon Mar 30 2020 17:53:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.50707 * 119.99744 * 2 1 4 4 C 1.53006 * 109.46824 * 294.99382 * 3 2 1 5 5 C 1.52996 * 109.46786 * 180.02562 * 4 3 2 6 6 C 1.50704 * 109.47144 * 180.02562 * 5 4 3 7 7 H 1.08000 * 119.99758 * 0.02562 * 6 5 4 8 8 C 1.37875 * 120.00019 * 179.97438 * 6 5 4 9 9 N 1.31512 * 120.00078 * 0.02562 * 8 6 5 10 10 Si 1.86807 * 119.99826 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.46736 * 0.02562 * 10 8 6 12 12 H 1.48493 * 109.47150 * 120.00176 * 10 8 6 13 13 H 1.48493 * 109.47087 * 240.00367 * 10 8 6 14 14 N 1.28010 * 120.00356 * 179.97438 * 2 1 3 15 15 N 1.40101 * 119.99782 * 354.73957 * 14 2 1 16 16 C 1.47154 * 120.97974 * 114.10547 * 15 14 2 17 17 C 1.53291 * 108.38282 * 129.44797 * 16 15 14 18 18 O 1.42959 * 109.26820 * 52.27433 * 17 16 15 19 19 C 1.42958 * 114.17106 * 297.50003 * 18 17 16 20 20 C 1.47155 * 120.98253 * 294.08548 * 15 14 2 21 21 H 1.09000 * 109.46839 * 268.02071 * 1 2 3 22 22 H 1.08995 * 109.47164 * 28.01828 * 1 2 3 23 23 H 1.08996 * 109.46883 * 148.01975 * 1 2 3 24 24 H 1.08995 * 109.47281 * 54.99998 * 3 2 1 25 25 H 1.09001 * 109.46869 * 175.00385 * 3 2 1 26 26 H 1.08995 * 109.47694 * 300.00363 * 4 3 2 27 27 H 1.09001 * 109.46578 * 60.00825 * 4 3 2 28 28 H 1.09003 * 109.47437 * 300.00315 * 5 4 3 29 29 H 1.09001 * 109.47309 * 60.00318 * 5 4 3 30 30 H 0.97004 * 119.99862 * 179.97438 * 9 8 6 31 31 H 1.08994 * 109.68211 * 9.71852 * 16 15 14 32 32 H 1.09004 * 109.71345 * 249.18469 * 16 15 14 33 33 H 1.09000 * 109.51471 * 172.23227 * 17 16 15 34 34 H 1.09004 * 109.50862 * 292.32307 * 17 16 15 35 35 H 1.09000 * 109.47689 * 302.57778 * 19 18 17 36 36 H 1.08996 * 109.55523 * 182.47338 * 19 18 17 37 37 H 1.08995 * 109.68209 * 350.28128 * 20 15 14 38 38 H 1.09003 * 109.67922 * 110.83511 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3052 0.0000 4 6 1.9876 2.0516 -1.3075 5 6 2.7530 3.3763 -1.3078 6 6 2.4838 4.1118 -2.5953 7 1 1.8316 3.6779 -3.3388 8 6 3.0692 5.3390 -2.8236 9 7 3.8630 5.8676 -1.9180 10 14 2.7360 6.2503 -4.4198 11 1 1.8165 5.4474 -5.2655 12 1 2.1113 7.5634 -4.1190 13 1 4.0147 6.4647 -5.1436 14 7 2.1472 -1.1086 0.0005 15 7 1.4511 -2.3193 0.1123 16 6 1.4287 -3.2853 -0.9975 17 6 1.8167 -4.6626 -0.4475 18 8 0.9918 -4.9703 0.6788 19 6 1.1439 -4.0703 1.7790 20 6 0.7213 -2.6626 1.3431 21 1 -0.3633 -0.0355 1.0271 22 1 -0.3633 0.9072 -0.4827 23 1 -0.3633 -0.8717 -0.5443 24 1 1.9317 1.9145 0.8418 25 1 3.3288 1.1080 0.0895 26 1 2.3164 1.4422 -2.1493 27 1 0.9193 2.2488 -1.3970 28 1 2.4246 3.9859 -0.4659 29 1 3.8213 3.1787 -1.2183 30 1 4.2752 6.7308 -2.0788 31 1 2.1423 -2.9814 -1.7633 32 1 0.4273 -3.3300 -1.4259 33 1 1.6733 -5.4171 -1.2209 34 1 2.8625 -4.6504 -0.1404 35 1 2.1869 -4.0557 2.0951 36 1 0.5168 -4.3983 2.6080 37 1 0.9664 -1.9463 2.1272 38 1 -0.3515 -2.6444 1.1509 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000841605567.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:53:52 Heat of formation + Delta-G solvation = -30.584221 kcal Electronic energy + Delta-G solvation = -17017.684762 eV Core-core repulsion = 14281.137273 eV Total energy + Delta-G solvation = -2736.547489 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.25331 -38.53838 -36.26484 -34.74598 -33.09474 -32.33131 -30.17484 -28.88692 -26.93020 -25.24934 -25.03110 -22.45526 -21.67017 -19.61359 -18.40081 -17.39713 -17.22249 -16.55745 -16.40619 -16.18495 -16.06538 -15.64523 -15.42210 -14.72195 -14.55285 -14.14158 -13.67674 -13.36713 -13.24588 -12.90071 -12.81084 -12.65182 -12.56590 -12.38418 -12.34153 -12.03211 -11.56419 -11.43453 -11.29003 -11.19951 -10.79638 -10.54198 -10.52993 -8.50245 -8.17930 -6.28386 1.10193 1.41298 1.41836 1.54819 1.81030 2.42888 2.89573 3.15556 3.69645 3.85981 3.87653 4.14274 4.21107 4.22805 4.26879 4.35901 4.39893 4.45732 4.61213 4.64037 4.65611 4.75329 4.76355 4.90814 4.94177 4.99296 5.15009 5.21398 5.32947 5.55861 5.64562 5.80536 5.89499 6.12906 6.25385 6.28136 6.88997 7.40713 7.54557 8.94004 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.053546 B = 0.003709 C = 0.003628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 522.786973 B = 7546.391848 C = 7714.900853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.131 3.869 3 C -0.062 4.062 4 C -0.085 4.085 5 C 0.023 3.977 6 C -0.542 4.542 7 H 0.059 0.941 8 C -0.001 4.001 9 N -0.933 5.933 10 Si 0.963 3.037 11 H -0.263 1.263 12 H -0.277 1.277 13 H -0.280 1.280 14 N -0.288 5.288 15 N -0.596 5.596 16 C 0.119 3.881 17 C 0.054 3.946 18 O -0.397 6.397 19 C 0.054 3.946 20 C 0.104 3.896 21 H 0.088 0.912 22 H 0.081 0.919 23 H 0.066 0.934 24 H 0.092 0.908 25 H 0.066 0.934 26 H 0.042 0.958 27 H 0.062 0.938 28 H 0.000 1.000 29 H -0.009 1.009 30 H 0.263 0.737 31 H 0.076 0.924 32 H 0.054 0.946 33 H 0.123 0.877 34 H 0.051 0.949 35 H 0.049 0.951 36 H 0.123 0.877 37 H 0.076 0.924 38 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.974 -18.826 5.930 21.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.062 4.062 3 C -0.101 4.101 4 C -0.124 4.124 5 C -0.014 4.014 6 C -0.580 4.580 7 H 0.077 0.923 8 C -0.198 4.198 9 N -0.573 5.573 10 Si 0.788 3.212 11 H -0.187 1.187 12 H -0.203 1.203 13 H -0.206 1.206 14 N -0.088 5.088 15 N -0.419 5.419 16 C -0.005 4.005 17 C -0.024 4.024 18 O -0.315 6.315 19 C -0.024 4.024 20 C -0.021 4.021 21 H 0.107 0.893 22 H 0.099 0.901 23 H 0.085 0.915 24 H 0.111 0.889 25 H 0.085 0.915 26 H 0.061 0.939 27 H 0.081 0.919 28 H 0.018 0.982 29 H 0.009 0.991 30 H 0.072 0.928 31 H 0.094 0.906 32 H 0.072 0.928 33 H 0.141 0.859 34 H 0.069 0.931 35 H 0.067 0.933 36 H 0.141 0.859 37 H 0.094 0.906 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -7.152 -19.371 5.923 21.482 hybrid contribution -0.435 1.341 -0.634 1.546 sum -7.586 -18.030 5.289 20.263 Atomic orbital electron populations 1.21418 0.91638 1.03673 1.03615 1.25996 0.95523 0.94853 0.89839 1.20507 0.99585 0.90494 0.99522 1.21327 1.00270 0.95659 0.95115 1.19030 0.94386 0.92420 0.95607 1.21740 1.28306 1.03929 1.03987 0.92291 1.25956 0.94884 0.98607 1.00390 1.70099 1.32361 1.18506 1.36379 0.85430 0.78124 0.78393 0.79294 1.18654 1.20276 1.20558 1.75110 1.24915 0.92379 1.16379 1.49996 1.63255 1.12977 1.15634 1.21905 1.00906 0.88500 0.89152 1.23044 0.94068 0.96114 0.89137 1.87888 1.65288 1.52600 1.25746 1.23032 1.01556 0.88455 0.89377 1.22185 0.95525 0.97242 0.87138 0.89306 0.90050 0.91524 0.88946 0.91548 0.93929 0.91902 0.98165 0.99095 0.92811 0.90566 0.92764 0.85945 0.93078 0.93250 0.85895 0.90591 0.92488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.45 8.74 71.24 0.62 -2.83 16 2 C 0.13 3.87 6.40 46.53 0.30 4.16 16 3 C -0.06 -2.05 5.60 29.85 0.17 -1.88 16 4 C -0.08 -3.41 5.03 30.59 0.15 -3.25 16 5 C 0.02 1.18 4.97 29.85 0.15 1.33 16 6 C -0.54 -30.75 9.11 25.60 0.23 -30.52 16 7 H 0.06 3.22 7.74 -2.91 -0.02 3.20 16 8 C 0.00 -0.04 5.46 84.65 0.46 0.42 16 9 N -0.93 -56.72 13.29 21.45 0.28 -56.43 16 10 Si 0.96 44.22 29.54 68.60 2.03 46.25 16 11 H -0.26 -11.51 7.11 99.48 0.71 -10.80 16 12 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 13 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 14 N -0.29 -8.98 11.19 -41.19 -0.46 -9.44 16 15 N -0.60 -15.47 2.67 -511.61 -1.37 -16.84 16 16 C 0.12 2.67 7.01 86.35 0.61 3.27 16 17 C 0.05 1.02 6.98 72.08 0.50 1.52 16 18 O -0.40 -8.32 10.74 -148.98 -1.60 -9.92 16 19 C 0.05 0.97 6.98 72.08 0.50 1.47 16 20 C 0.10 2.14 5.70 86.36 0.49 2.63 16 21 H 0.09 1.79 8.10 -2.39 -0.02 1.77 16 22 H 0.08 1.95 6.92 -2.39 -0.02 1.93 16 23 H 0.07 1.61 7.37 -2.39 -0.02 1.59 16 24 H 0.09 2.84 8.14 -2.39 -0.02 2.82 16 25 H 0.07 2.36 8.11 -2.39 -0.02 2.34 16 26 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 27 H 0.06 2.36 7.02 -2.39 -0.02 2.34 16 28 H 0.00 0.00 8.14 -2.39 -0.02 -0.02 16 29 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 30 H 0.26 14.98 8.31 -92.71 -0.77 14.21 16 31 H 0.08 1.79 8.13 -2.39 -0.02 1.77 16 32 H 0.05 1.15 8.14 -2.38 -0.02 1.13 16 33 H 0.12 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.05 1.01 8.14 -2.38 -0.02 0.99 16 35 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.12 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.08 1.55 8.13 -2.39 -0.02 1.53 16 38 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 Total: -1.00 -66.49 311.98 4.08 -62.41 By element: Atomic # 1 Polarization: 6.63 SS G_CDS: 1.00 Total: 7.64 kcal Atomic # 6 Polarization: -27.87 SS G_CDS: 4.19 Total: -23.68 kcal Atomic # 7 Polarization: -81.17 SS G_CDS: -1.54 Total: -82.71 kcal Atomic # 8 Polarization: -8.32 SS G_CDS: -1.60 Total: -9.92 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.25 kcal Total: -66.49 4.08 -62.41 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000841605567.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.828 kcal (2) G-P(sol) polarization free energy of solvation -66.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds