Wall clock time and date at job start Mon Mar 30 2020 17:53:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 N 1.46293 * 114.00077 * 2 1 4 4 C 1.46956 * 111.00162 * 119.99863 * 3 2 1 5 5 C 1.53050 * 109.36857 * 183.18699 * 4 3 2 6 6 N 1.46960 * 109.36525 * 301.59925 * 5 4 3 7 7 C 1.46897 * 111.00183 * 183.18242 * 6 5 4 8 8 C 1.53002 * 109.47068 * 164.20002 * 7 6 5 9 9 C 1.50704 * 115.54672 * 305.34343 * 8 7 6 10 10 H 1.08001 * 120.00171 * 116.99178 * 9 8 7 11 11 C 1.37876 * 120.00390 * 296.98335 * 9 8 7 12 12 N 1.31514 * 120.00097 * 174.39205 * 11 9 8 13 13 Si 1.86807 * 119.99683 * 354.66652 * 11 9 8 14 14 H 1.48494 * 109.46921 * 94.02984 * 13 11 9 15 15 H 1.48504 * 109.46900 * 214.03371 * 13 11 9 16 16 H 1.48503 * 109.47152 * 334.02976 * 13 11 9 17 17 C 1.52992 * 117.49946 * 91.01041 * 8 7 6 18 18 C 1.52990 * 117.50107 * 159.67389 * 8 7 6 19 19 C 1.46956 * 110.87830 * 59.31631 * 6 5 4 20 20 C 1.46960 * 111.00097 * 243.79732 * 3 2 1 21 21 H 1.09001 * 109.47680 * 300.00563 * 1 2 3 22 22 H 1.09009 * 109.46849 * 60.00223 * 1 2 3 23 23 H 1.08997 * 109.47615 * 179.97438 * 1 2 3 24 24 H 1.09001 * 109.49014 * 63.21998 * 4 3 2 25 25 H 1.09005 * 109.48905 * 303.15135 * 4 3 2 26 26 H 1.08996 * 109.49554 * 181.63115 * 5 4 3 27 27 H 1.09000 * 109.49045 * 61.56236 * 5 4 3 28 28 H 1.09004 * 109.46607 * 44.20530 * 7 6 5 29 29 H 1.08995 * 109.47326 * 284.19906 * 7 6 5 30 30 H 0.96998 * 119.99654 * 179.97438 * 12 11 9 31 31 H 1.09002 * 117.50498 * 215.00380 * 17 8 7 32 32 H 1.08998 * 117.49907 * 0.02562 * 17 8 7 33 33 H 1.09009 * 117.49995 * 359.97438 * 18 8 7 34 34 H 1.08998 * 117.50308 * 144.97146 * 18 8 7 35 35 H 1.09001 * 109.49014 * 60.64873 * 19 6 5 36 36 H 1.09005 * 109.48905 * 180.71736 * 19 6 5 37 37 H 1.09000 * 109.48445 * 296.78140 * 20 3 2 38 38 H 1.09003 * 109.48792 * 56.81736 * 20 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 7 2.0240 1.3364 0.0000 4 6 2.8649 1.5386 1.1881 5 6 3.4032 2.9713 1.1912 6 7 4.1709 3.2060 -0.0398 7 6 4.7683 4.5480 -0.0398 8 6 5.8576 4.6213 -1.1118 9 6 6.9319 3.5684 -1.0197 10 1 7.0577 2.8538 -1.8198 11 6 7.7543 3.5173 0.0857 12 7 8.6175 2.5340 0.2183 13 14 7.6371 4.8407 1.3989 14 1 6.7194 4.3896 2.4757 15 1 8.9847 5.0921 1.9699 16 1 7.1141 6.0925 0.7949 17 6 5.4437 5.0879 -2.5088 18 6 6.2692 6.0090 -1.6070 19 6 3.3300 3.0039 -1.2279 20 6 2.7917 1.5712 -1.2310 21 1 -0.3634 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8901 23 1 -0.3634 -1.0276 -0.0005 24 1 3.6987 0.8369 1.1672 25 1 2.2709 1.3715 2.0867 26 1 4.0506 3.1148 2.0563 27 1 2.5703 3.6727 1.2396 28 1 5.2062 4.7507 0.9376 29 1 3.9979 5.2887 -0.2536 30 1 9.1963 2.4983 0.9958 31 1 5.9484 4.6335 -3.3614 32 1 4.3955 5.3432 -2.6641 33 1 5.7637 6.8700 -1.1695 34 1 7.3171 6.1608 -1.8659 35 1 2.4962 3.7056 -1.2070 36 1 3.9240 3.1710 -2.1265 37 1 3.6246 0.8698 -1.2794 38 1 2.1444 1.4273 -2.0962 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000878685066.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:53:56 Heat of formation + Delta-G solvation = 46.499214 kcal Electronic energy + Delta-G solvation = -18290.946106 eV Core-core repulsion = 15557.741205 eV Total energy + Delta-G solvation = -2733.204901 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -38.88672 -37.03764 -35.68921 -32.55882 -31.98052 -30.65206 -27.52106 -26.02115 -25.05622 -23.30856 -22.91750 -21.44100 -19.47067 -18.88391 -17.13519 -16.23882 -15.34518 -15.18516 -14.98341 -14.53398 -14.34838 -14.11073 -13.65163 -13.48490 -13.11278 -12.71227 -12.30062 -12.12559 -11.94190 -11.54531 -11.03742 -10.97311 -10.94327 -10.70214 -10.57354 -10.26431 -10.04127 -9.84127 -9.42144 -8.97926 -8.55905 -8.55288 -8.33134 -7.59625 -5.97238 -3.93482 2.72149 3.31184 3.42769 3.47224 4.31764 4.51739 4.85628 4.99950 5.29126 5.37487 5.45308 5.45950 5.50542 5.55377 5.58644 5.69006 5.71233 5.84698 5.90857 5.95119 6.07009 6.14741 6.16209 6.21841 6.27254 6.36062 6.48085 6.58331 6.75312 6.89356 7.06982 7.14120 7.15784 7.63487 7.73527 7.91199 8.63556 9.05361 9.67456 11.15794 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.029048 B = 0.007634 C = 0.006985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.682650 B = 3667.012039 C = 4007.518793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 O -0.271 6.271 3 N -0.363 5.363 4 C 0.046 3.954 5 C 0.060 3.940 6 N -0.510 5.510 7 C 0.095 3.905 8 C 0.009 3.991 9 C -0.454 4.454 10 H 0.073 0.927 11 C 0.081 3.919 12 N -0.901 5.901 13 Si 0.868 3.132 14 H -0.283 1.283 15 H -0.296 1.296 16 H -0.254 1.254 17 C -0.188 4.188 18 C -0.196 4.196 19 C 0.068 3.932 20 C 0.043 3.957 21 H 0.040 0.960 22 H 0.040 0.960 23 H 0.083 0.917 24 H 0.059 0.941 25 H 0.079 0.921 26 H 0.084 0.916 27 H 0.033 0.967 28 H 0.062 0.938 29 H 0.015 0.985 30 H 0.261 0.739 31 H 0.084 0.916 32 H 0.068 0.932 33 H 0.065 0.935 34 H 0.086 0.914 35 H 0.029 0.971 36 H 0.098 0.902 37 H 0.060 0.940 38 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.950 0.832 0.346 13.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 O -0.274 6.274 3 N -0.133 5.133 4 C -0.083 4.083 5 C -0.069 4.069 6 N -0.233 5.233 7 C -0.033 4.033 8 C 0.008 3.992 9 C -0.491 4.491 10 H 0.091 0.909 11 C -0.120 4.120 12 N -0.540 5.540 13 Si 0.697 3.303 14 H -0.209 1.209 15 H -0.223 1.223 16 H -0.178 1.178 17 C -0.226 4.226 18 C -0.235 4.235 19 C -0.060 4.060 20 C -0.085 4.085 21 H 0.059 0.941 22 H 0.059 0.941 23 H 0.101 0.899 24 H 0.078 0.922 25 H 0.098 0.902 26 H 0.102 0.898 27 H 0.051 0.949 28 H 0.081 0.919 29 H 0.033 0.967 30 H 0.071 0.929 31 H 0.102 0.898 32 H 0.087 0.913 33 H 0.084 0.916 34 H 0.105 0.895 35 H 0.047 0.953 36 H 0.117 0.883 37 H 0.078 0.922 38 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -13.710 0.527 0.469 13.728 hybrid contribution -0.140 0.791 0.857 1.175 sum -13.850 1.318 1.326 13.975 Atomic orbital electron populations 1.22532 0.81356 1.01166 1.00213 1.90690 1.20193 1.19674 1.96851 1.67848 1.34574 1.06972 1.03952 1.22437 0.95850 0.97542 0.92427 1.22158 0.95850 0.94172 0.94697 1.61900 1.31500 1.29607 1.00335 1.21794 0.95012 0.86530 0.99927 1.19393 0.95943 0.93573 0.90306 1.20070 1.11554 1.12215 1.05305 0.90872 1.24807 0.95045 0.94929 0.97215 1.69900 1.23626 1.30924 1.29505 0.87041 0.76744 0.84171 0.82384 1.20927 1.22310 1.17831 1.22828 0.97739 1.06009 0.95982 1.23071 0.99545 0.94730 1.06114 1.22152 0.94610 0.93427 0.95860 1.22512 0.96645 0.97918 0.91432 0.94106 0.94092 0.89867 0.92233 0.90231 0.89795 0.94854 0.91940 0.96716 0.92919 0.89793 0.91345 0.91626 0.89531 0.95252 0.88345 0.92162 0.90273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.51 11.51 101.05 1.16 1.68 16 2 O -0.27 -4.25 10.96 -13.92 -0.15 -4.41 16 3 N -0.36 -5.87 5.05 -113.63 -0.57 -6.44 16 4 C 0.05 0.75 6.16 -3.77 -0.02 0.73 16 5 C 0.06 1.03 5.59 -3.77 -0.02 1.01 16 6 N -0.51 -10.08 4.35 -234.47 -1.02 -11.10 16 7 C 0.09 1.96 4.44 -3.82 -0.02 1.94 16 8 C 0.01 0.21 0.60 -155.67 -0.09 0.11 16 9 C -0.45 -12.41 9.09 -34.44 -0.31 -12.72 16 10 H 0.07 2.22 8.06 -52.49 -0.42 1.80 16 11 C 0.08 2.31 5.47 -17.82 -0.10 2.21 16 12 N -0.90 -27.49 13.96 55.43 0.77 -26.71 16 13 Si 0.87 21.35 24.79 -169.99 -4.21 17.13 16 14 H -0.28 -6.82 7.07 56.52 0.40 -6.42 16 15 H -0.30 -7.41 7.11 56.52 0.40 -7.01 16 16 H -0.25 -5.87 5.88 56.52 0.33 -5.54 16 17 C -0.19 -3.70 8.37 -26.70 -0.22 -3.92 16 18 C -0.20 -4.07 8.34 -26.70 -0.22 -4.29 16 19 C 0.07 1.18 5.36 -3.77 -0.02 1.16 16 20 C 0.04 0.71 6.16 -3.77 -0.02 0.69 16 21 H 0.04 0.44 8.14 -51.93 -0.42 0.01 16 22 H 0.04 0.44 8.14 -51.92 -0.42 0.02 16 23 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 24 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 25 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 26 H 0.08 1.45 8.02 -51.93 -0.42 1.03 16 27 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.06 1.36 4.60 -51.93 -0.24 1.12 16 29 H 0.01 0.28 8.00 -51.93 -0.42 -0.14 16 30 H 0.26 7.54 8.31 -40.82 -0.34 7.21 16 31 H 0.08 1.66 8.14 -51.93 -0.42 1.24 16 32 H 0.07 1.19 8.06 -51.93 -0.42 0.77 16 33 H 0.07 1.25 8.14 -51.92 -0.42 0.82 16 34 H 0.09 1.86 8.14 -51.93 -0.42 1.43 16 35 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 36 H 0.10 1.77 6.11 -51.93 -0.32 1.46 16 37 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 38 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 LS Contribution 299.13 15.07 4.51 4.51 Total: -1.00 -30.27 299.13 -7.08 -37.35 By element: Atomic # 1 Polarization: 7.58 SS G_CDS: -6.51 Total: 1.07 kcal Atomic # 6 Polarization: -11.52 SS G_CDS: 0.11 Total: -11.41 kcal Atomic # 7 Polarization: -43.43 SS G_CDS: -0.82 Total: -44.25 kcal Atomic # 8 Polarization: -4.25 SS G_CDS: -0.15 Total: -4.41 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -4.21 Total: 17.13 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -30.27 -7.08 -37.35 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878685066.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.854 kcal (2) G-P(sol) polarization free energy of solvation -30.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.355 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds