Wall clock time and date at job start Mon Mar 30 2020 17:54:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.47024 * 2 1 4 4 C 1.50696 * 109.46617 * 119.99866 * 2 1 3 5 5 H 1.08006 * 120.00022 * 120.00367 * 4 2 1 6 6 C 1.37872 * 120.00456 * 299.99908 * 4 2 1 7 7 N 1.31522 * 119.99834 * 0.02562 * 6 4 2 8 8 Si 1.86807 * 120.00241 * 179.97438 * 6 4 2 9 9 H 1.48494 * 109.46956 * 0.02562 * 8 6 4 10 10 H 1.48504 * 109.46824 * 120.00539 * 8 6 4 11 11 H 1.48500 * 109.47039 * 239.99758 * 8 6 4 12 12 C 1.52998 * 109.47248 * 239.99849 * 2 1 3 13 13 N 1.46893 * 109.46918 * 60.00213 * 12 2 1 14 14 C 1.46904 * 111.00058 * 179.97438 * 13 12 2 15 15 H 1.09004 * 110.27355 * 45.55881 * 14 13 12 16 16 C 1.54592 * 110.31023 * 283.47300 * 14 13 12 17 17 C 1.54942 * 102.91964 * 219.12590 * 16 14 13 18 18 N 1.48530 * 103.22846 * 37.40877 * 17 16 14 19 19 C 1.47898 * 105.82193 * 320.79776 * 18 17 16 20 20 C 1.53002 * 109.91575 * 265.97276 * 19 18 17 21 21 C 1.53003 * 109.91844 * 144.68394 * 19 18 17 22 22 H 1.09007 * 109.46639 * 60.00166 * 1 2 3 23 23 H 1.08998 * 109.46884 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47309 * 300.00124 * 1 2 3 25 25 H 1.09002 * 109.46709 * 59.99927 * 3 2 1 26 26 H 1.08994 * 109.46822 * 179.97438 * 3 2 1 27 27 H 1.08997 * 109.47452 * 299.99973 * 3 2 1 28 28 H 0.96996 * 119.99981 * 179.97438 * 7 6 4 29 29 H 1.08994 * 109.47033 * 180.02562 * 12 2 1 30 30 H 1.09005 * 109.47119 * 300.00493 * 12 2 1 31 31 H 1.00903 * 111.00569 * 303.94851 * 13 12 2 32 32 H 1.09000 * 110.72377 * 337.47972 * 16 14 13 33 33 H 1.08998 * 110.72732 * 100.76803 * 16 14 13 34 34 H 1.08996 * 110.66913 * 155.85281 * 17 16 14 35 35 H 1.09006 * 110.66306 * 278.97549 * 17 16 14 36 36 H 1.00900 * 111.00293 * 200.27795 * 18 17 16 37 37 H 1.08999 * 109.47208 * 177.58508 * 20 19 18 38 38 H 1.08996 * 109.47421 * 297.59404 * 20 19 18 39 39 H 1.09004 * 109.46866 * 57.59062 * 20 19 18 40 40 H 1.09003 * 109.46672 * 296.43465 * 21 19 18 41 41 H 1.08996 * 109.46843 * 56.43322 * 21 19 18 42 42 H 1.09001 * 109.46958 * 176.43874 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1315 6 6 1.6992 -0.2394 2.4827 7 7 0.9427 0.8297 2.6034 8 14 2.3212 -1.1204 4.0080 9 1 3.1462 -2.2871 3.6039 10 1 3.1463 -0.1874 4.8166 11 1 1.1658 -1.5866 4.8161 12 6 2.0401 -0.7213 -1.2492 13 7 1.5505 -0.0288 -2.4486 14 6 2.0220 -0.6945 -3.6702 15 1 1.8911 -1.7735 -3.5870 16 6 3.5074 -0.3526 -3.9285 17 6 3.5607 -0.1806 -5.4674 18 7 2.2681 0.4806 -5.7805 19 6 1.2657 -0.1556 -4.8986 20 6 0.5798 -1.3078 -5.6354 21 6 0.2272 0.8785 -4.4590 22 1 -0.3633 0.5139 -0.8901 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 1.6766 1.9563 0.8900 26 1 3.1300 1.4424 0.0005 27 1 1.6767 1.9563 -0.8899 28 1 0.7080 1.1609 3.4843 29 1 3.1300 -0.7216 -1.2489 30 1 1.6767 -1.7490 -1.2492 31 1 0.5439 0.0413 -2.4402 32 1 3.7824 0.5752 -3.4269 33 1 4.1527 -1.1710 -3.6093 34 1 4.3979 0.4555 -5.7546 35 1 3.6263 -1.1504 -5.9608 36 1 2.0250 0.3576 -6.7521 37 1 -0.1263 -1.7984 -4.9654 38 1 0.0471 -0.9185 -6.5029 39 1 1.3301 -2.0276 -5.9627 40 1 0.7134 1.6509 -3.8630 41 1 -0.2291 1.3318 -5.3389 42 1 -0.5423 0.3893 -3.8618 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000925692369.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:54:13 Heat of formation + Delta-G solvation = -1.382470 kcal Electronic energy + Delta-G solvation = -18605.426988 eV Core-core repulsion = 16005.978876 eV Total energy + Delta-G solvation = -2599.448112 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.51222 -36.39651 -33.36040 -32.23385 -30.86784 -28.20556 -27.20929 -25.52096 -25.17438 -24.80982 -23.26575 -20.80136 -18.82132 -18.31294 -16.12932 -15.97335 -15.40390 -15.15960 -14.50599 -13.84995 -13.64274 -13.13060 -13.06431 -12.83016 -12.37161 -12.15159 -11.98803 -11.68628 -11.49407 -11.18055 -11.14729 -11.10656 -10.83360 -10.81929 -10.60461 -10.49795 -10.25424 -10.11993 -10.01183 -9.34481 -9.01395 -8.57604 -8.47625 -8.26397 -7.62556 -5.88554 -3.98729 3.31683 3.40051 3.43527 4.22955 4.45366 4.69651 4.74358 4.98830 5.16693 5.26585 5.36883 5.38899 5.45547 5.60532 5.77494 5.88373 5.90023 5.95820 6.02872 6.16787 6.23737 6.38583 6.43220 6.52203 6.67238 6.76424 6.92980 6.96150 7.12605 7.20969 7.39414 7.44267 7.53251 7.79176 7.80898 7.89168 8.04955 8.25369 8.39115 8.59653 9.03076 9.66194 11.11956 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.041154 B = 0.005736 C = 0.005508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 680.203151 B = 4880.179731 C = 5082.323286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.069 3.931 3 C -0.118 4.118 4 C -0.505 4.505 5 H 0.051 0.949 6 C 0.065 3.935 7 N -0.885 5.885 8 Si 0.887 3.113 9 H -0.275 1.275 10 H -0.285 1.285 11 H -0.286 1.286 12 C 0.074 3.926 13 N -0.674 5.674 14 C 0.085 3.915 15 H 0.037 0.963 16 C -0.113 4.113 17 C 0.039 3.961 18 N -0.656 5.656 19 C 0.094 3.906 20 C -0.171 4.171 21 C -0.127 4.127 22 H 0.010 0.990 23 H 0.017 0.983 24 H 0.083 0.917 25 H 0.073 0.927 26 H 0.017 0.983 27 H 0.021 0.979 28 H 0.257 0.743 29 H 0.055 0.945 30 H 0.009 0.991 31 H 0.340 0.660 32 H 0.088 0.912 33 H 0.062 0.938 34 H 0.078 0.922 35 H 0.034 0.966 36 H 0.330 0.670 37 H 0.062 0.938 38 H 0.057 0.943 39 H 0.051 0.949 40 H 0.082 0.918 41 H 0.047 0.953 42 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.433 -2.332 -14.775 14.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.068 3.932 3 C -0.176 4.176 4 C -0.544 4.544 5 H 0.069 0.931 6 C -0.136 4.136 7 N -0.524 5.524 8 Si 0.716 3.284 9 H -0.200 1.200 10 H -0.211 1.211 11 H -0.212 1.212 12 C -0.054 4.054 13 N -0.308 5.308 14 C -0.027 4.027 15 H 0.054 0.946 16 C -0.152 4.152 17 C -0.090 4.090 18 N -0.285 5.285 19 C 0.003 3.997 20 C -0.230 4.230 21 C -0.185 4.185 22 H 0.029 0.971 23 H 0.037 0.963 24 H 0.102 0.898 25 H 0.092 0.908 26 H 0.036 0.964 27 H 0.040 0.960 28 H 0.067 0.933 29 H 0.074 0.926 30 H 0.027 0.973 31 H 0.162 0.838 32 H 0.106 0.894 33 H 0.081 0.919 34 H 0.097 0.903 35 H 0.052 0.948 36 H 0.146 0.854 37 H 0.081 0.919 38 H 0.076 0.924 39 H 0.070 0.930 40 H 0.101 0.899 41 H 0.066 0.934 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 0.952 -1.143 -14.224 14.302 hybrid contribution -0.303 -2.376 0.437 2.435 sum 0.649 -3.519 -13.787 14.243 Atomic orbital electron populations 1.21836 0.98626 0.98252 1.00268 1.18087 0.92014 0.93106 0.89964 1.21623 0.97733 0.98138 1.00071 1.21154 1.30959 1.11719 0.90530 0.93053 1.24885 0.95098 0.94954 0.98659 1.69849 1.36939 1.22826 1.22746 0.86619 0.78586 0.79732 0.83504 1.20007 1.21110 1.21194 1.22166 0.98997 0.94164 0.90069 1.60885 1.16473 1.53010 1.00446 1.22315 0.94780 0.95091 0.90483 0.94563 1.22552 0.95654 1.02659 0.94309 1.22981 0.92977 0.96537 0.96551 1.63131 1.01968 1.55485 1.07909 1.21721 0.92642 0.92759 0.92597 1.22496 1.00903 0.98793 1.00819 1.21664 0.96964 0.99236 1.00614 0.97088 0.96340 0.89821 0.90843 0.96378 0.96010 0.93282 0.92634 0.97255 0.83780 0.89353 0.91927 0.90335 0.94804 0.85419 0.91936 0.92365 0.92994 0.89917 0.93417 0.92900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.14 7.92 37.16 0.29 -2.84 16 2 C 0.07 1.68 0.57 -155.66 -0.09 1.59 16 3 C -0.12 -2.91 8.09 37.16 0.30 -2.61 16 4 C -0.50 -13.71 8.01 -34.44 -0.28 -13.98 16 5 H 0.05 1.40 7.74 -52.48 -0.41 1.00 16 6 C 0.06 1.77 5.15 -17.82 -0.09 1.68 16 7 N -0.88 -24.67 9.35 55.43 0.52 -24.15 16 8 Si 0.89 21.26 29.54 -169.99 -5.02 16.24 16 9 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 10 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 12 C 0.07 1.57 4.42 -3.83 -0.02 1.55 16 13 N -0.67 -12.09 4.43 -105.30 -0.47 -12.56 16 14 C 0.08 1.29 2.91 -66.36 -0.19 1.10 16 15 H 0.04 0.57 7.57 -51.93 -0.39 0.18 16 16 C -0.11 -1.64 6.19 -24.87 -0.15 -1.79 16 17 C 0.04 0.46 7.54 -1.90 -0.01 0.45 16 18 N -0.66 -8.08 7.01 -96.47 -0.68 -8.75 16 19 C 0.09 1.22 1.15 -130.53 -0.15 1.07 16 20 C -0.17 -1.87 8.25 37.16 0.31 -1.57 16 21 C -0.13 -1.71 7.59 37.16 0.28 -1.43 16 22 H 0.01 0.22 6.57 -51.92 -0.34 -0.12 16 23 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 24 H 0.08 2.21 6.07 -51.93 -0.32 1.89 16 25 H 0.07 1.98 6.07 -51.93 -0.32 1.67 16 26 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.02 0.49 7.60 -51.93 -0.39 0.10 16 28 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 29 H 0.06 1.20 7.72 -51.93 -0.40 0.80 16 30 H 0.01 0.20 8.11 -51.93 -0.42 -0.22 16 31 H 0.34 6.06 4.35 -39.29 -0.17 5.89 16 32 H 0.09 1.46 8.06 -51.93 -0.42 1.04 16 33 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.33 3.40 8.43 -39.29 -0.33 3.07 16 37 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 39 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.08 1.30 7.48 -51.93 -0.39 0.91 16 41 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 42 H 0.05 0.70 7.09 -51.93 -0.37 0.33 16 LS Contribution 313.90 15.07 4.73 4.73 Total: -1.00 -27.36 313.90 -8.32 -35.68 By element: Atomic # 1 Polarization: 13.21 SS G_CDS: -7.60 Total: 5.60 kcal Atomic # 6 Polarization: -16.98 SS G_CDS: 0.20 Total: -16.78 kcal Atomic # 7 Polarization: -44.84 SS G_CDS: -0.62 Total: -45.46 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -27.36 -8.32 -35.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000925692369.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.295 kcal (2) G-P(sol) polarization free energy of solvation -27.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds