Wall clock time and date at job start Mon Mar 30 2020 17:54:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.47024 * 2 1 4 4 C 1.50696 * 109.46617 * 119.99866 * 2 1 3 5 5 H 1.08006 * 120.00022 * 120.00367 * 4 2 1 6 6 C 1.37872 * 120.00456 * 299.99908 * 4 2 1 7 7 N 1.31522 * 119.99834 * 0.02562 * 6 4 2 8 8 Si 1.86807 * 120.00241 * 179.97438 * 6 4 2 9 9 H 1.48494 * 109.46956 * 0.02562 * 8 6 4 10 10 H 1.48504 * 109.46824 * 120.00539 * 8 6 4 11 11 H 1.48500 * 109.47039 * 239.99758 * 8 6 4 12 12 C 1.52998 * 109.47248 * 239.99849 * 2 1 3 13 13 N 1.46893 * 109.46918 * 60.00213 * 12 2 1 14 14 C 1.46904 * 111.00058 * 179.97438 * 13 12 2 15 15 H 1.09004 * 110.27355 * 45.55881 * 14 13 12 16 16 C 1.54592 * 110.31023 * 283.47300 * 14 13 12 17 17 C 1.54942 * 102.91964 * 219.12590 * 16 14 13 18 18 N 1.48530 * 103.22846 * 37.40877 * 17 16 14 19 19 C 1.47898 * 105.82193 * 320.79776 * 18 17 16 20 20 C 1.53002 * 109.91575 * 265.97276 * 19 18 17 21 21 C 1.53003 * 109.91844 * 144.68394 * 19 18 17 22 22 H 1.09007 * 109.46639 * 60.00166 * 1 2 3 23 23 H 1.08998 * 109.46884 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47309 * 300.00124 * 1 2 3 25 25 H 1.09002 * 109.46709 * 59.99927 * 3 2 1 26 26 H 1.08994 * 109.46822 * 179.97438 * 3 2 1 27 27 H 1.08997 * 109.47452 * 299.99973 * 3 2 1 28 28 H 0.96996 * 119.99981 * 179.97438 * 7 6 4 29 29 H 1.08994 * 109.47033 * 180.02562 * 12 2 1 30 30 H 1.09005 * 109.47119 * 300.00493 * 12 2 1 31 31 H 1.00903 * 111.00569 * 303.94851 * 13 12 2 32 32 H 1.09000 * 110.72377 * 337.47972 * 16 14 13 33 33 H 1.08998 * 110.72732 * 100.76803 * 16 14 13 34 34 H 1.08996 * 110.66913 * 155.85281 * 17 16 14 35 35 H 1.09006 * 110.66306 * 278.97549 * 17 16 14 36 36 H 1.00900 * 111.00293 * 200.27795 * 18 17 16 37 37 H 1.08999 * 109.47208 * 177.58508 * 20 19 18 38 38 H 1.08996 * 109.47421 * 297.59404 * 20 19 18 39 39 H 1.09004 * 109.46866 * 57.59062 * 20 19 18 40 40 H 1.09003 * 109.46672 * 296.43465 * 21 19 18 41 41 H 1.08996 * 109.46843 * 56.43322 * 21 19 18 42 42 H 1.09001 * 109.46958 * 176.43874 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1315 6 6 1.6992 -0.2394 2.4827 7 7 0.9427 0.8297 2.6034 8 14 2.3212 -1.1204 4.0080 9 1 3.1462 -2.2871 3.6039 10 1 3.1463 -0.1874 4.8166 11 1 1.1658 -1.5866 4.8161 12 6 2.0401 -0.7213 -1.2492 13 7 1.5505 -0.0288 -2.4486 14 6 2.0220 -0.6945 -3.6702 15 1 1.8911 -1.7735 -3.5870 16 6 3.5074 -0.3526 -3.9285 17 6 3.5607 -0.1806 -5.4674 18 7 2.2681 0.4806 -5.7805 19 6 1.2657 -0.1556 -4.8986 20 6 0.5798 -1.3078 -5.6354 21 6 0.2272 0.8785 -4.4590 22 1 -0.3633 0.5139 -0.8901 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 1.6766 1.9563 0.8900 26 1 3.1300 1.4424 0.0005 27 1 1.6767 1.9563 -0.8899 28 1 0.7080 1.1609 3.4843 29 1 3.1300 -0.7216 -1.2489 30 1 1.6767 -1.7490 -1.2492 31 1 0.5439 0.0413 -2.4402 32 1 3.7824 0.5752 -3.4269 33 1 4.1527 -1.1710 -3.6093 34 1 4.3979 0.4555 -5.7546 35 1 3.6263 -1.1504 -5.9608 36 1 2.0250 0.3576 -6.7521 37 1 -0.1263 -1.7984 -4.9654 38 1 0.0471 -0.9185 -6.5029 39 1 1.3301 -2.0276 -5.9627 40 1 0.7134 1.6509 -3.8630 41 1 -0.2291 1.3318 -5.3389 42 1 -0.5423 0.3893 -3.8618 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000925692369.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:54:13 Heat of formation + Delta-G solvation = -18.419125 kcal Electronic energy + Delta-G solvation = -18606.165753 eV Core-core repulsion = 16005.978876 eV Total energy + Delta-G solvation = -2600.186877 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 240.190 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.64493 -38.15409 -35.00290 -33.27075 -32.69990 -29.45674 -28.24008 -27.48935 -27.22683 -26.13981 -24.70299 -21.95542 -20.19610 -19.95866 -17.88213 -17.13750 -17.04344 -16.44222 -16.18954 -15.22846 -15.07223 -14.69991 -14.18040 -14.02964 -13.94645 -13.65710 -13.38535 -13.04848 -12.97364 -12.80422 -12.56086 -12.50964 -12.43726 -12.20482 -12.16332 -12.08548 -12.02533 -11.76064 -11.42541 -11.29181 -10.86951 -10.57763 -10.34384 -9.41340 -9.10347 -7.96495 -6.13413 1.40669 1.43872 1.53294 2.46368 3.25451 3.26765 3.40501 3.64930 3.93661 4.14942 4.28280 4.35290 4.44188 4.57054 4.60522 4.68003 4.73645 4.85150 4.88072 4.94138 4.98877 5.04255 5.07493 5.12631 5.18935 5.22375 5.29246 5.30889 5.44809 5.53962 5.58007 5.70381 5.77879 5.95717 6.19375 6.29337 6.36558 6.51312 6.58176 6.68730 6.96434 7.54196 9.01905 Molecular weight = 240.19amu Principal moments of inertia in cm(-1) A = 0.041154 B = 0.005736 C = 0.005508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 680.203151 B = 4880.179731 C = 5082.323286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.060 3.940 3 C -0.103 4.103 4 C -0.525 4.525 5 H 0.043 0.957 6 C 0.022 3.978 7 N -0.903 5.903 8 Si 0.944 3.056 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.282 1.282 12 C 0.091 3.909 13 N -0.674 5.674 14 C 0.079 3.921 15 H 0.035 0.965 16 C -0.116 4.116 17 C 0.047 3.953 18 N -0.665 5.665 19 C 0.098 3.902 20 C -0.165 4.165 21 C -0.124 4.124 22 H 0.033 0.967 23 H 0.016 0.984 24 H 0.056 0.944 25 H 0.048 0.952 26 H 0.008 0.992 27 H 0.033 0.967 28 H 0.257 0.743 29 H 0.045 0.955 30 H 0.003 0.997 31 H 0.341 0.659 32 H 0.063 0.937 33 H 0.064 0.936 34 H 0.088 0.912 35 H 0.052 0.948 36 H 0.345 0.655 37 H 0.057 0.943 38 H 0.076 0.924 39 H 0.058 0.942 40 H 0.056 0.944 41 H 0.063 0.937 42 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.413 -3.027 -16.392 16.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.059 3.941 3 C -0.161 4.161 4 C -0.564 4.564 5 H 0.061 0.939 6 C -0.177 4.177 7 N -0.543 5.543 8 Si 0.771 3.229 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.208 1.208 12 C -0.038 4.038 13 N -0.308 5.308 14 C -0.032 4.032 15 H 0.053 0.947 16 C -0.155 4.155 17 C -0.082 4.082 18 N -0.295 5.295 19 C 0.006 3.994 20 C -0.224 4.224 21 C -0.182 4.182 22 H 0.052 0.948 23 H 0.035 0.965 24 H 0.075 0.925 25 H 0.067 0.933 26 H 0.027 0.973 27 H 0.052 0.948 28 H 0.067 0.933 29 H 0.064 0.936 30 H 0.021 0.979 31 H 0.163 0.837 32 H 0.081 0.919 33 H 0.083 0.917 34 H 0.106 0.894 35 H 0.071 0.929 36 H 0.162 0.838 37 H 0.077 0.923 38 H 0.095 0.905 39 H 0.077 0.923 40 H 0.075 0.925 41 H 0.082 0.918 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 0.932 -1.839 -15.862 15.995 hybrid contribution -0.287 -2.131 0.914 2.337 sum 0.644 -3.970 -14.948 15.479 Atomic orbital electron populations 1.21661 0.98171 0.97996 0.99992 1.18136 0.92396 0.92834 0.90687 1.21442 0.96912 0.98414 0.99297 1.21456 1.31135 1.11801 0.92016 0.93901 1.25536 0.95349 0.95639 1.01151 1.69976 1.37456 1.23626 1.23217 0.85720 0.78094 0.78723 0.80328 1.19748 1.20899 1.20778 1.21801 0.98198 0.93554 0.90220 1.60826 1.16492 1.53018 1.00468 1.22452 0.95698 0.94874 0.90193 0.94705 1.22533 0.95142 1.01433 0.96384 1.22941 0.93135 0.97734 0.94381 1.63082 1.01884 1.55738 1.08819 1.21645 0.92493 0.93320 0.91894 1.22426 1.00936 0.97964 1.01071 1.21614 0.96990 0.98736 1.00906 0.94843 0.96483 0.92504 0.93342 0.97300 0.94807 0.93315 0.93619 0.97867 0.83683 0.91863 0.91684 0.89402 0.92927 0.83772 0.92342 0.90548 0.92295 0.92500 0.91825 0.92894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.72 7.92 71.98 0.57 -5.15 16 2 C 0.06 2.94 0.57 -52.93 -0.03 2.91 16 3 C -0.10 -5.13 8.09 71.98 0.58 -4.55 16 4 C -0.53 -28.80 8.01 25.60 0.21 -28.59 16 5 H 0.04 2.36 7.74 -2.91 -0.02 2.34 16 6 C 0.02 1.22 5.15 84.65 0.44 1.65 16 7 N -0.90 -50.95 9.35 21.45 0.20 -50.75 16 8 Si 0.94 43.78 29.54 68.60 2.03 45.81 16 9 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 10 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 11 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 12 C 0.09 3.86 4.42 86.30 0.38 4.24 16 13 N -0.67 -23.81 4.43 -487.05 -2.16 -25.97 16 14 C 0.08 2.30 2.91 45.79 0.13 2.43 16 15 H 0.04 1.05 7.57 -2.38 -0.02 1.03 16 16 C -0.12 -3.24 6.19 31.80 0.20 -3.04 16 17 C 0.05 1.01 7.54 86.65 0.65 1.66 16 18 N -0.66 -14.63 7.01 -459.11 -3.22 -17.85 16 19 C 0.10 2.32 1.15 3.67 0.00 2.32 16 20 C -0.17 -3.11 8.25 71.98 0.59 -2.51 16 21 C -0.12 -3.14 7.59 71.98 0.55 -2.59 16 22 H 0.03 1.39 6.57 -2.38 -0.02 1.37 16 23 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 24 H 0.06 3.02 6.07 -2.39 -0.01 3.00 16 25 H 0.05 2.65 6.07 -2.39 -0.01 2.64 16 26 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 27 H 0.03 1.55 7.60 -2.39 -0.02 1.53 16 28 H 0.26 13.91 8.31 -92.71 -0.77 13.14 16 29 H 0.05 2.00 7.72 -2.39 -0.02 1.98 16 30 H 0.00 0.14 8.11 -2.38 -0.02 0.12 16 31 H 0.34 11.85 4.35 -89.69 -0.39 11.46 16 32 H 0.06 2.08 8.06 -2.39 -0.02 2.06 16 33 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 34 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.05 0.95 8.14 -2.38 -0.02 0.93 16 36 H 0.35 5.94 8.43 -89.69 -0.76 5.18 16 37 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.06 1.04 8.14 -2.38 -0.02 1.02 16 40 H 0.06 1.73 7.48 -2.39 -0.02 1.72 16 41 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 42 H 0.05 1.31 7.09 -2.39 -0.02 1.30 16 Total: -1.00 -58.01 313.90 0.95 -57.06 By element: Atomic # 1 Polarization: 23.09 SS G_CDS: -0.17 Total: 22.93 kcal Atomic # 6 Polarization: -35.49 SS G_CDS: 4.27 Total: -31.22 kcal Atomic # 7 Polarization: -89.39 SS G_CDS: -5.18 Total: -94.57 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.81 kcal Total: -58.01 0.95 -57.06 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000925692369.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.638 kcal (2) G-P(sol) polarization free energy of solvation -58.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds