Wall clock time and date at job start Mon Mar 30 2020 17:54:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.47485 * 111.00007 * 2 1 4 4 C 1.53701 * 87.92384 * 221.29852 * 3 2 1 5 5 C 1.47477 * 111.00335 * 264.02562 * 2 1 3 6 6 H 1.09002 * 113.47651 * 23.93552 * 5 2 1 7 7 C 1.53000 * 113.47552 * 253.53104 * 5 2 1 8 8 N 1.46494 * 109.47184 * 75.43662 * 7 5 2 9 9 C 1.34783 * 120.00111 * 180.02562 * 8 7 5 10 10 O 1.21283 * 119.99830 * 359.97438 * 9 8 7 11 11 C 1.50696 * 119.99848 * 180.02562 * 9 8 7 12 12 C 1.53000 * 109.46922 * 179.97438 * 11 9 8 13 13 C 1.52997 * 109.47428 * 179.97438 * 12 11 9 14 14 C 1.50698 * 109.47606 * 180.02562 * 13 12 11 15 15 H 1.08000 * 119.99428 * 359.97438 * 14 13 12 16 16 C 1.37874 * 120.00326 * 180.02562 * 14 13 12 17 17 N 1.31516 * 119.99965 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99997 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.46941 * 60.00460 * 18 16 14 20 20 H 1.48509 * 109.46979 * 180.02562 * 18 16 14 21 21 H 1.48497 * 109.47500 * 299.99855 * 18 16 14 22 22 H 1.08997 * 109.46957 * 155.97436 * 1 2 3 23 23 H 1.08995 * 109.47256 * 275.97548 * 1 2 3 24 24 H 1.08998 * 109.46634 * 35.97674 * 1 2 3 25 25 H 1.08996 * 113.47464 * 336.05462 * 3 2 1 26 26 H 1.08998 * 113.47726 * 106.46822 * 3 2 1 27 27 H 1.09003 * 114.16637 * 272.40267 * 4 3 2 28 28 H 1.09003 * 114.22868 * 139.64075 * 4 3 2 29 29 H 1.08995 * 109.47053 * 195.43869 * 7 5 2 30 30 H 1.09002 * 109.46839 * 315.43818 * 7 5 2 31 31 H 0.97006 * 119.99998 * 359.97438 * 8 7 5 32 32 H 1.09006 * 109.47379 * 299.99321 * 11 9 8 33 33 H 1.08992 * 109.47734 * 60.00005 * 11 9 8 34 34 H 1.08999 * 109.47479 * 299.99917 * 12 11 9 35 35 H 1.09002 * 109.47363 * 60.00093 * 12 11 9 36 36 H 1.09003 * 109.47689 * 300.00259 * 13 12 11 37 37 H 1.09001 * 109.47180 * 60.00101 * 13 12 11 38 38 H 0.97005 * 120.00240 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9975 1.3769 0.0000 4 6 3.0549 0.9114 -1.0137 5 6 1.9976 -0.1433 -1.3693 6 1 1.3001 0.1838 -2.1405 7 6 2.5875 -1.5262 -1.6533 8 7 1.5014 -2.4918 -1.8379 9 6 1.7850 -3.7831 -2.1002 10 8 2.9394 -4.1455 -2.1837 11 6 0.6678 -4.7763 -2.2906 12 6 1.2577 -6.1591 -2.5745 13 6 0.1234 -7.1677 -2.7673 14 6 0.7044 -8.5299 -3.0463 15 1 1.7755 -8.6629 -3.0829 16 6 -0.1315 -9.6062 -3.2558 17 7 -1.4359 -9.4441 -3.2118 18 14 0.5887 -11.2946 -3.6024 19 1 1.4358 -11.7158 -2.4577 20 1 -0.5123 -12.2733 -3.7906 21 1 1.4151 -11.2369 -4.8349 22 1 -0.3633 -0.9386 -0.4184 23 1 -0.3633 0.1070 1.0220 24 1 -0.3632 0.8317 -0.6037 25 1 1.3001 2.1097 -0.4058 26 1 2.4177 1.6807 0.9587 27 1 3.9581 0.5027 -0.5606 28 1 3.2565 1.6274 -1.8105 29 1 3.1936 -1.4837 -2.5581 30 1 3.2096 -1.8352 -0.8133 31 1 0.5781 -2.2020 -1.7707 32 1 0.0609 -4.8185 -1.3861 33 1 0.0463 -4.4673 -3.1310 34 1 1.8642 -6.1168 -3.4791 35 1 1.8794 -6.4684 -1.7343 36 1 -0.4829 -7.2101 -1.8624 37 1 -0.4987 -6.8587 -3.6073 38 1 -2.0240 -10.2012 -3.3596 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000928552148.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:54:14 Heat of formation + Delta-G solvation = -47.385147 kcal Electronic energy + Delta-G solvation = -16736.856729 eV Core-core repulsion = 13999.580697 eV Total energy + Delta-G solvation = -2737.276032 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.38255 -40.38605 -36.20614 -35.58065 -34.02370 -31.81449 -30.37303 -28.75605 -25.81552 -25.13219 -23.95735 -22.25463 -21.40332 -20.50041 -18.63211 -17.83212 -17.31066 -16.99918 -16.60670 -16.49207 -15.94325 -15.62029 -15.08277 -14.71190 -14.21577 -14.09726 -13.99764 -13.77224 -13.18424 -12.93493 -12.59061 -12.51412 -12.46752 -12.41712 -12.36317 -11.82261 -11.65398 -11.55798 -11.46430 -11.27556 -10.72282 -10.54078 -10.08271 -9.86609 -8.20146 -6.30311 1.39570 1.42779 1.50837 1.66583 2.20620 2.42341 2.99979 3.12645 3.50140 3.81300 3.88855 4.08673 4.13994 4.22608 4.25938 4.33867 4.41320 4.52081 4.64334 4.77193 4.81450 4.89364 4.96842 4.98955 4.99586 5.10696 5.18957 5.22354 5.34778 5.46452 5.54659 5.75307 5.86707 6.10167 6.27537 6.54232 6.84870 7.27608 7.38295 8.91275 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.060540 B = 0.003441 C = 0.003305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 462.389803 B = 8134.214686 C = 8470.795674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.016 4.016 2 N -0.497 5.497 3 C -0.001 4.001 4 C -0.131 4.131 5 C 0.017 3.983 6 H 0.100 0.900 7 C 0.136 3.864 8 N -0.717 5.717 9 C 0.514 3.486 10 O -0.586 6.586 11 C -0.130 4.130 12 C -0.082 4.082 13 C 0.026 3.974 14 C -0.550 4.550 15 H 0.051 0.949 16 C 0.003 3.997 17 N -0.930 5.930 18 Si 0.962 3.038 19 H -0.269 1.269 20 H -0.278 1.278 21 H -0.269 1.269 22 H 0.066 0.934 23 H 0.072 0.928 24 H 0.052 0.948 25 H 0.086 0.914 26 H 0.087 0.913 27 H 0.090 0.910 28 H 0.099 0.901 29 H 0.068 0.932 30 H 0.054 0.946 31 H 0.410 0.590 32 H 0.105 0.895 33 H 0.109 0.891 34 H 0.041 0.959 35 H 0.038 0.962 36 H 0.000 1.000 37 H 0.002 0.998 38 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.037 24.947 4.439 25.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 N -0.220 5.220 3 C -0.129 4.129 4 C -0.169 4.169 5 C -0.092 4.092 6 H 0.118 0.882 7 C 0.012 3.988 8 N -0.369 5.369 9 C 0.302 3.698 10 O -0.466 6.466 11 C -0.170 4.170 12 C -0.121 4.121 13 C -0.011 4.011 14 C -0.588 4.588 15 H 0.069 0.931 16 C -0.195 4.195 17 N -0.570 5.570 18 Si 0.787 3.213 19 H -0.194 1.194 20 H -0.203 1.203 21 H -0.194 1.194 22 H 0.085 0.915 23 H 0.090 0.910 24 H 0.071 0.929 25 H 0.104 0.896 26 H 0.106 0.894 27 H 0.109 0.891 28 H 0.118 0.882 29 H 0.086 0.914 30 H 0.072 0.928 31 H 0.247 0.753 32 H 0.123 0.877 33 H 0.127 0.873 34 H 0.060 0.940 35 H 0.057 0.943 36 H 0.019 0.981 37 H 0.020 0.980 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 3.835 24.138 4.913 24.930 hybrid contribution -0.663 -0.504 -0.644 1.053 sum 3.172 23.634 4.269 24.225 Atomic orbital electron populations 1.22965 0.88728 1.01884 1.02875 1.68940 1.10367 1.20582 1.22127 1.23867 0.97371 0.90775 1.00894 1.23188 0.96997 0.97146 0.99553 1.23709 0.98757 0.94164 0.92595 0.88205 1.21338 0.89608 0.87094 1.00766 1.45909 1.10971 1.07720 1.72329 1.21071 0.90349 0.83571 0.74827 1.90659 1.23705 1.79766 1.52467 1.21674 0.96751 0.93466 1.05107 1.21161 0.97858 0.93092 0.99961 1.19016 0.93617 0.93024 0.95424 1.21677 0.93153 0.95320 1.48622 0.93056 1.25916 0.95228 1.03349 0.94998 1.70061 1.03536 1.32587 1.50786 0.85545 0.78085 0.78633 0.79062 1.19447 1.20286 1.19380 0.91477 0.90962 0.92937 0.89615 0.89437 0.89093 0.88230 0.91417 0.92789 0.75315 0.87670 0.87309 0.94019 0.94271 0.98134 0.97981 0.92627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.02 -0.20 9.69 127.69 1.24 1.04 16 2 N -0.50 -7.80 6.52 -927.60 -6.05 -13.84 16 3 C 0.00 -0.01 7.71 83.64 0.64 0.64 16 4 C -0.13 -1.42 8.02 31.00 0.25 -1.17 16 5 C 0.02 0.25 3.11 42.19 0.13 0.38 16 6 H 0.10 1.12 7.91 -2.39 -0.02 1.10 16 7 C 0.14 2.91 5.69 86.38 0.49 3.41 16 8 N -0.72 -16.97 5.56 -463.07 -2.57 -19.55 16 9 C 0.51 17.04 7.83 87.65 0.69 17.73 16 10 O -0.59 -24.80 15.98 -3.04 -0.05 -24.85 16 11 C -0.13 -4.38 5.70 29.85 0.17 -4.21 16 12 C -0.08 -3.74 4.44 30.59 0.14 -3.61 16 13 C 0.03 1.42 4.97 29.85 0.15 1.57 16 14 C -0.55 -32.90 9.11 25.60 0.23 -32.67 16 15 H 0.05 3.03 7.74 -2.91 -0.02 3.01 16 16 C 0.00 0.18 5.46 84.65 0.46 0.64 16 17 N -0.93 -57.03 13.29 21.45 0.28 -56.74 16 18 Si 0.96 45.69 29.54 68.60 2.03 47.71 16 19 H -0.27 -12.41 7.11 99.48 0.71 -11.71 16 20 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 21 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 22 H 0.07 0.86 6.92 -2.39 -0.02 0.85 16 23 H 0.07 0.93 8.14 -2.39 -0.02 0.92 16 24 H 0.05 0.49 7.52 -2.39 -0.02 0.48 16 25 H 0.09 0.65 7.54 -2.39 -0.02 0.64 16 26 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 27 H 0.09 1.14 8.12 -2.39 -0.02 1.12 16 28 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.41 7.30 7.25 -92.70 -0.67 6.63 16 32 H 0.11 3.17 8.14 -2.38 -0.02 3.15 16 33 H 0.11 3.19 8.14 -2.39 -0.02 3.17 16 34 H 0.04 1.96 8.10 -2.39 -0.02 1.94 16 35 H 0.04 1.86 8.10 -2.39 -0.02 1.84 16 36 H 0.00 0.02 8.14 -2.39 -0.02 0.00 16 37 H 0.00 0.10 8.14 -2.39 -0.02 0.08 16 38 H 0.26 15.22 8.31 -92.70 -0.77 14.45 16 Total: -1.00 -73.57 314.73 -1.42 -74.99 By element: Atomic # 1 Polarization: 8.19 SS G_CDS: 0.35 Total: 8.54 kcal Atomic # 6 Polarization: -20.85 SS G_CDS: 4.59 Total: -16.26 kcal Atomic # 7 Polarization: -81.80 SS G_CDS: -8.34 Total: -90.13 kcal Atomic # 8 Polarization: -24.80 SS G_CDS: -0.05 Total: -24.85 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 2.03 Total: 47.71 kcal Total: -73.57 -1.42 -74.99 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928552148.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.600 kcal (2) G-P(sol) polarization free energy of solvation -73.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds