Wall clock time and date at job start Mon Mar 30 2020 17:54:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46898 * 111.00178 * 2 1 4 4 C 1.46893 * 111.00343 * 123.95864 * 2 1 3 5 5 H 1.09007 * 115.51750 * 29.57577 * 4 2 1 6 6 C 1.52999 * 117.44730 * 244.22827 * 4 2 1 7 7 H 1.09000 * 119.52187 * 4.08499 * 6 4 2 8 8 C 1.54373 * 118.13097 * 160.68369 * 6 4 2 9 9 N 1.48560 * 104.59754 * 87.23035 * 8 6 4 10 10 C 1.46896 * 110.99718 * 200.95970 * 9 8 6 11 11 C 1.52996 * 109.47256 * 285.41360 * 10 9 8 12 12 H 1.09004 * 109.47066 * 60.00378 * 11 10 9 13 13 O 1.42903 * 109.47446 * 300.00254 * 11 10 9 14 14 C 1.50702 * 109.47159 * 180.02562 * 11 10 9 15 15 H 1.08002 * 120.00299 * 0.02562 * 14 11 10 16 16 C 1.37884 * 119.99942 * 179.72211 * 14 11 10 17 17 N 1.31514 * 119.99985 * 180.27663 * 16 14 11 18 18 Si 1.86800 * 119.99777 * 0.28166 * 16 14 11 19 19 H 1.48498 * 109.47109 * 89.99834 * 18 16 14 20 20 H 1.48507 * 109.46754 * 209.99574 * 18 16 14 21 21 H 1.48498 * 109.47278 * 329.99405 * 18 16 14 22 22 C 1.48560 * 104.21831 * 320.51556 * 9 8 6 23 23 C 1.53004 * 117.44992 * 174.99808 * 4 2 1 24 24 H 1.09004 * 119.51873 * 354.34869 * 23 4 2 25 25 H 1.09001 * 109.46668 * 296.04501 * 1 2 3 26 26 H 1.08996 * 109.47212 * 56.04256 * 1 2 3 27 27 H 1.09001 * 109.47164 * 176.04324 * 1 2 3 28 28 H 1.09002 * 109.47067 * 183.95570 * 3 2 1 29 29 H 1.09001 * 109.47168 * 303.95450 * 3 2 1 30 30 H 1.08999 * 109.47061 * 63.95625 * 3 2 1 31 31 H 1.08998 * 110.41149 * 328.44715 * 8 6 4 32 32 H 1.09005 * 110.41176 * 206.01094 * 8 6 4 33 33 H 1.09004 * 109.46774 * 165.41559 * 10 9 8 34 34 H 1.09000 * 109.47723 * 45.41947 * 10 9 8 35 35 H 0.96697 * 113.99557 * 300.00558 * 13 11 10 36 36 H 0.96996 * 119.99730 * 180.02562 * 17 16 14 37 37 H 1.08997 * 110.41095 * 158.26365 * 22 9 8 38 38 H 1.08999 * 110.41182 * 280.70412 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9955 -0.7660 1.1374 5 1 1.3651 -1.5849 1.4842 6 6 2.7994 -0.0014 2.1910 7 1 2.9009 1.0807 2.1083 8 6 2.9715 -0.6449 3.5837 9 7 4.1775 -1.5026 3.4533 10 6 4.1990 -2.5417 4.4914 11 6 4.5754 -1.9132 5.8345 12 1 3.8411 -1.1518 6.0979 13 8 5.8685 -1.3133 5.7341 14 6 4.5981 -2.9794 6.8993 15 1 4.3676 -4.0031 6.6436 16 6 4.9193 -2.6491 8.1989 17 7 4.9444 -3.5805 9.1271 18 14 5.3186 -0.8787 8.6412 19 1 4.0720 -0.1730 9.0325 20 1 6.2771 -0.8560 9.7753 21 1 5.9243 -0.1998 7.4675 22 6 4.0532 -2.1038 2.1005 23 6 3.5110 -0.9612 1.2153 24 1 4.1399 -0.6164 0.3944 25 1 -0.3633 0.4512 0.9233 26 1 -0.3633 0.5740 -0.8524 27 1 -0.3633 -1.0252 -0.0709 28 1 3.0828 1.3431 -0.0709 29 1 1.5898 1.9163 -0.8524 30 1 1.7045 1.8723 0.9233 31 1 2.0999 -1.2499 3.8332 32 1 3.1313 0.1233 4.3403 33 1 4.9333 -3.3031 4.2280 34 1 3.2127 -2.9994 4.5680 35 1 6.5729 -1.9338 5.5020 36 1 5.1700 -3.3481 10.0414 37 1 5.0274 -2.4342 1.7404 38 1 3.3508 -2.9372 2.1180 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931276679.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:54:17 Heat of formation + Delta-G solvation = 6.532588 kcal Electronic energy + Delta-G solvation = -17670.405996 eV Core-core repulsion = 14935.468012 eV Total energy + Delta-G solvation = -2734.937984 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.21550 -37.16075 -35.67106 -32.74822 -32.20483 -28.72200 -28.19318 -27.83155 -25.78440 -24.01805 -21.81512 -20.45077 -19.95417 -19.72584 -17.29385 -16.78624 -15.43769 -14.92417 -14.81796 -14.57802 -14.44205 -14.35383 -13.44195 -13.34222 -12.75107 -12.66982 -12.54443 -12.34201 -12.12270 -11.85790 -11.73790 -11.33991 -11.17473 -10.89642 -10.76025 -10.50942 -10.34992 -9.90274 -9.81606 -9.00350 -8.60281 -8.35423 -8.23245 -7.89790 -6.11613 -4.22839 3.39907 3.40831 3.50367 3.78296 3.79169 4.34652 4.56245 4.64360 4.75251 4.93892 5.00994 5.12695 5.21084 5.23417 5.24525 5.31171 5.43939 5.61818 5.65354 5.68372 5.71229 5.88979 5.91132 5.92943 6.08549 6.17156 6.26022 6.36445 6.61121 6.74354 6.82682 7.12198 7.37349 7.45594 7.70005 8.31078 8.85105 9.14728 9.53827 10.99085 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.044597 B = 0.005104 C = 0.005005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.695837 B = 5484.691958 C = 5592.767854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.514 5.514 3 C 0.018 3.982 4 C 0.044 3.956 5 H 0.112 0.888 6 C -0.190 4.190 7 H 0.117 0.883 8 C 0.066 3.934 9 N -0.498 5.498 10 C 0.029 3.971 11 C 0.205 3.795 12 H 0.050 0.950 13 O -0.570 6.570 14 C -0.567 4.567 15 H 0.071 0.929 16 C 0.084 3.916 17 N -0.894 5.894 18 Si 0.871 3.129 19 H -0.289 1.289 20 H -0.296 1.296 21 H -0.215 1.215 22 C 0.060 3.940 23 C -0.146 4.146 24 H 0.115 0.885 25 H 0.029 0.971 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.071 0.929 29 H 0.067 0.933 30 H 0.034 0.966 31 H 0.041 0.959 32 H 0.085 0.915 33 H 0.070 0.930 34 H 0.035 0.965 35 H 0.354 0.646 36 H 0.265 0.735 37 H 0.083 0.917 38 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.419 7.449 -17.261 19.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.235 5.235 3 C -0.130 4.130 4 C -0.065 4.065 5 H 0.130 0.870 6 C -0.211 4.211 7 H 0.135 0.865 8 C -0.062 4.062 9 N -0.222 5.222 10 C -0.099 4.099 11 C 0.147 3.853 12 H 0.068 0.932 13 O -0.375 6.375 14 C -0.605 4.605 15 H 0.089 0.911 16 C -0.120 4.120 17 N -0.532 5.532 18 Si 0.697 3.303 19 H -0.215 1.215 20 H -0.223 1.223 21 H -0.137 1.137 22 C -0.068 4.068 23 C -0.165 4.165 24 H 0.133 0.867 25 H 0.048 0.952 26 H 0.088 0.912 27 H 0.088 0.912 28 H 0.090 0.910 29 H 0.086 0.914 30 H 0.053 0.947 31 H 0.059 0.941 32 H 0.103 0.897 33 H 0.089 0.911 34 H 0.053 0.947 35 H 0.199 0.801 36 H 0.074 0.926 37 H 0.102 0.898 38 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -6.080 8.017 -17.315 20.026 hybrid contribution -0.620 0.075 0.987 1.168 sum -6.700 8.092 -16.329 19.417 Atomic orbital electron populations 1.22403 0.86802 1.02464 1.00660 1.61851 1.08037 1.13766 1.39849 1.22516 1.01220 0.88637 1.00662 1.22876 0.93550 0.98948 0.91158 0.86991 1.24148 1.06527 0.98478 0.91963 0.86530 1.22587 0.91848 0.97067 0.94738 1.65611 1.36765 1.18808 1.01044 1.23020 1.00111 0.93191 0.93581 1.19633 0.83017 0.92914 0.89736 0.93217 1.86664 1.18247 1.40140 1.92448 1.21540 1.50194 0.95887 0.92836 0.91133 1.24978 0.92963 0.98085 0.95993 1.69960 1.47359 1.33716 1.02120 0.87034 0.78443 0.85679 0.79151 1.21544 1.22258 1.13700 1.22623 1.00280 0.94262 0.89604 1.23502 0.93547 0.99238 1.00249 0.86709 0.95193 0.91236 0.91183 0.91017 0.91395 0.94725 0.94066 0.89695 0.91135 0.94688 0.80057 0.92603 0.89834 0.94165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.54 60.06 0.57 0.79 16 2 N -0.51 -5.51 5.23 -243.18 -1.27 -6.78 16 3 C 0.02 0.16 8.28 60.06 0.50 0.66 16 4 C 0.04 0.53 5.67 -67.71 -0.38 0.15 16 5 H 0.11 1.36 8.04 -51.92 -0.42 0.94 16 6 C -0.19 -2.52 5.96 -89.24 -0.53 -3.05 16 7 H 0.12 1.47 6.10 -51.93 -0.32 1.15 16 8 C 0.07 1.06 5.72 -2.19 -0.01 1.04 16 9 N -0.50 -8.72 5.20 -229.98 -1.20 -9.92 16 10 C 0.03 0.57 4.43 -3.83 -0.02 0.56 16 11 C 0.21 4.85 2.37 -27.88 -0.07 4.78 16 12 H 0.05 1.22 6.90 -51.93 -0.36 0.87 16 13 O -0.57 -13.34 10.00 -35.23 -0.35 -13.69 16 14 C -0.57 -15.83 9.34 -34.44 -0.32 -16.15 16 15 H 0.07 2.12 7.99 -52.49 -0.42 1.70 16 16 C 0.08 2.44 5.47 -17.82 -0.10 2.34 16 17 N -0.89 -27.48 13.96 55.43 0.77 -26.70 16 18 Si 0.87 22.11 26.99 -169.99 -4.59 17.52 16 19 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 20 H -0.30 -7.54 7.11 56.52 0.40 -7.13 16 21 H -0.21 -5.38 5.30 56.52 0.30 -5.08 16 22 C 0.06 0.88 6.26 -2.19 -0.01 0.86 16 23 C -0.15 -1.88 6.47 -89.24 -0.58 -2.46 16 24 H 0.11 1.41 7.85 -51.93 -0.41 1.01 16 25 H 0.03 0.26 8.14 -51.93 -0.42 -0.16 16 26 H 0.07 0.51 8.12 -51.93 -0.42 0.09 16 27 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.07 0.69 7.17 -51.93 -0.37 0.32 16 29 H 0.07 0.53 8.12 -51.93 -0.42 0.11 16 30 H 0.03 0.33 6.90 -51.93 -0.36 -0.03 16 31 H 0.04 0.66 7.75 -51.93 -0.40 0.26 16 32 H 0.08 1.45 7.85 -51.93 -0.41 1.05 16 33 H 0.07 1.38 8.08 -51.93 -0.42 0.96 16 34 H 0.03 0.70 7.77 -51.93 -0.40 0.30 16 35 H 0.35 7.44 9.04 45.56 0.41 7.85 16 36 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 37 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 38 H 0.04 0.57 8.00 -51.93 -0.42 0.16 16 LS Contribution 298.80 15.07 4.50 4.50 Total: -1.00 -31.20 298.80 -8.72 -39.92 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: -5.63 Total: 5.63 kcal Atomic # 6 Polarization: -9.53 SS G_CDS: -0.95 Total: -10.48 kcal Atomic # 7 Polarization: -41.70 SS G_CDS: -1.69 Total: -43.40 kcal Atomic # 8 Polarization: -13.34 SS G_CDS: -0.35 Total: -13.69 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -4.59 Total: 17.52 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -31.20 -8.72 -39.92 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931276679.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.451 kcal (2) G-P(sol) polarization free energy of solvation -31.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.918 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds