Wall clock time and date at job start Mon Mar 30 2020 17:54:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46898 * 111.00178 * 2 1 4 4 C 1.46893 * 111.00343 * 123.95864 * 2 1 3 5 5 H 1.09007 * 115.51750 * 29.57577 * 4 2 1 6 6 C 1.52999 * 117.44730 * 244.22827 * 4 2 1 7 7 H 1.09000 * 119.52187 * 4.08499 * 6 4 2 8 8 C 1.54373 * 118.13097 * 160.68369 * 6 4 2 9 9 N 1.48560 * 104.59754 * 87.23035 * 8 6 4 10 10 C 1.46896 * 110.99718 * 200.95970 * 9 8 6 11 11 C 1.52996 * 109.47256 * 285.41360 * 10 9 8 12 12 H 1.09004 * 109.47066 * 60.00378 * 11 10 9 13 13 O 1.42903 * 109.47446 * 300.00254 * 11 10 9 14 14 C 1.50702 * 109.47159 * 180.02562 * 11 10 9 15 15 H 1.08002 * 120.00299 * 0.02562 * 14 11 10 16 16 C 1.37884 * 119.99942 * 179.72211 * 14 11 10 17 17 N 1.31514 * 119.99985 * 180.27663 * 16 14 11 18 18 Si 1.86800 * 119.99777 * 0.28166 * 16 14 11 19 19 H 1.48498 * 109.47109 * 89.99834 * 18 16 14 20 20 H 1.48507 * 109.46754 * 209.99574 * 18 16 14 21 21 H 1.48498 * 109.47278 * 329.99405 * 18 16 14 22 22 C 1.48560 * 104.21831 * 320.51556 * 9 8 6 23 23 C 1.53004 * 117.44992 * 174.99808 * 4 2 1 24 24 H 1.09004 * 119.51873 * 354.34869 * 23 4 2 25 25 H 1.09001 * 109.46668 * 296.04501 * 1 2 3 26 26 H 1.08996 * 109.47212 * 56.04256 * 1 2 3 27 27 H 1.09001 * 109.47164 * 176.04324 * 1 2 3 28 28 H 1.09002 * 109.47067 * 183.95570 * 3 2 1 29 29 H 1.09001 * 109.47168 * 303.95450 * 3 2 1 30 30 H 1.08999 * 109.47061 * 63.95625 * 3 2 1 31 31 H 1.08998 * 110.41149 * 328.44715 * 8 6 4 32 32 H 1.09005 * 110.41176 * 206.01094 * 8 6 4 33 33 H 1.09004 * 109.46774 * 165.41559 * 10 9 8 34 34 H 1.09000 * 109.47723 * 45.41947 * 10 9 8 35 35 H 0.96697 * 113.99557 * 300.00558 * 13 11 10 36 36 H 0.96996 * 119.99730 * 180.02562 * 17 16 14 37 37 H 1.08997 * 110.41095 * 158.26365 * 22 9 8 38 38 H 1.08999 * 110.41182 * 280.70412 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9955 -0.7660 1.1374 5 1 1.3651 -1.5849 1.4842 6 6 2.7994 -0.0014 2.1910 7 1 2.9009 1.0807 2.1083 8 6 2.9715 -0.6449 3.5837 9 7 4.1775 -1.5026 3.4533 10 6 4.1990 -2.5417 4.4914 11 6 4.5754 -1.9132 5.8345 12 1 3.8411 -1.1518 6.0979 13 8 5.8685 -1.3133 5.7341 14 6 4.5981 -2.9794 6.8993 15 1 4.3676 -4.0031 6.6436 16 6 4.9193 -2.6491 8.1989 17 7 4.9444 -3.5805 9.1271 18 14 5.3186 -0.8787 8.6412 19 1 4.0720 -0.1730 9.0325 20 1 6.2771 -0.8560 9.7753 21 1 5.9243 -0.1998 7.4675 22 6 4.0532 -2.1038 2.1005 23 6 3.5110 -0.9612 1.2153 24 1 4.1399 -0.6164 0.3944 25 1 -0.3633 0.4512 0.9233 26 1 -0.3633 0.5740 -0.8524 27 1 -0.3633 -1.0252 -0.0709 28 1 3.0828 1.3431 -0.0709 29 1 1.5898 1.9163 -0.8524 30 1 1.7045 1.8723 0.9233 31 1 2.0999 -1.2499 3.8332 32 1 3.1313 0.1233 4.3403 33 1 4.9333 -3.3031 4.2280 34 1 3.2127 -2.9994 4.5680 35 1 6.5729 -1.9338 5.5020 36 1 5.1700 -3.3481 10.0414 37 1 5.0274 -2.4342 1.7404 38 1 3.3508 -2.9372 2.1180 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931276679.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:54:17 Heat of formation + Delta-G solvation = -18.656298 kcal Electronic energy + Delta-G solvation = -17671.498268 eV Core-core repulsion = 14935.468012 eV Total energy + Delta-G solvation = -2736.030256 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 240.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.30860 -38.54030 -37.13261 -34.42307 -33.98826 -30.43419 -29.41903 -28.56788 -27.34503 -25.21298 -23.28220 -21.88864 -21.09470 -20.87014 -19.34589 -17.78156 -16.85334 -16.70137 -16.22026 -15.95316 -15.76305 -15.44432 -14.98980 -14.85198 -14.47356 -13.81781 -13.64330 -13.47336 -13.28603 -13.13743 -12.90293 -12.69693 -12.57143 -12.51776 -12.23763 -12.10788 -11.70601 -11.48126 -11.13707 -10.85889 -10.81233 -10.13013 -9.32795 -9.18062 -8.36788 -6.51476 1.38462 1.44220 1.75560 2.43614 2.48251 2.78964 3.01728 3.12861 3.58771 3.73827 3.92104 4.06529 4.12670 4.18877 4.28134 4.32565 4.38184 4.48411 4.56117 4.61238 4.66634 4.72701 4.83397 4.89755 4.93420 4.98386 4.99737 5.12518 5.20549 5.40804 5.46119 5.92281 5.94370 6.02418 6.07779 6.10038 6.61022 7.21967 7.37432 8.77465 Molecular weight = 240.16amu Principal moments of inertia in cm(-1) A = 0.044597 B = 0.005104 C = 0.005005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.695837 B = 5484.691958 C = 5592.767854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.522 5.522 3 C 0.017 3.983 4 C 0.059 3.941 5 H 0.111 0.889 6 C -0.191 4.191 7 H 0.126 0.874 8 C 0.062 3.938 9 N -0.509 5.509 10 C 0.043 3.957 11 C 0.213 3.787 12 H 0.043 0.957 13 O -0.573 6.573 14 C -0.568 4.568 15 H 0.037 0.963 16 C 0.031 3.969 17 N -0.939 5.939 18 Si 0.937 3.063 19 H -0.286 1.286 20 H -0.295 1.295 21 H -0.207 1.207 22 C 0.060 3.940 23 C -0.143 4.143 24 H 0.125 0.875 25 H 0.028 0.972 26 H 0.086 0.914 27 H 0.073 0.927 28 H 0.068 0.932 29 H 0.084 0.916 30 H 0.033 0.967 31 H 0.038 0.962 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.029 0.971 35 H 0.365 0.635 36 H 0.267 0.733 37 H 0.091 0.909 38 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.680 9.089 -19.128 22.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.243 5.243 3 C -0.131 4.131 4 C -0.051 4.051 5 H 0.129 0.871 6 C -0.212 4.212 7 H 0.143 0.857 8 C -0.066 4.066 9 N -0.233 5.233 10 C -0.085 4.085 11 C 0.155 3.845 12 H 0.061 0.939 13 O -0.379 6.379 14 C -0.606 4.606 15 H 0.055 0.945 16 C -0.169 4.169 17 N -0.578 5.578 18 Si 0.762 3.238 19 H -0.212 1.212 20 H -0.222 1.222 21 H -0.129 1.129 22 C -0.068 4.068 23 C -0.163 4.163 24 H 0.143 0.857 25 H 0.047 0.953 26 H 0.104 0.896 27 H 0.091 0.909 28 H 0.087 0.913 29 H 0.103 0.897 30 H 0.052 0.948 31 H 0.056 0.944 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.047 0.953 35 H 0.212 0.788 36 H 0.076 0.924 37 H 0.109 0.891 38 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -6.345 9.658 -19.212 22.419 hybrid contribution -0.566 -0.494 1.505 1.682 sum -6.911 9.164 -17.706 21.101 Atomic orbital electron populations 1.22481 0.85570 1.03069 1.01344 1.61885 1.09209 1.14458 1.38720 1.22561 1.01140 0.88017 1.01382 1.22832 0.92926 0.98574 0.90773 0.87138 1.24052 1.07873 0.98859 0.90401 0.85664 1.22575 0.91172 0.96588 0.96279 1.65542 1.37787 1.18268 1.01714 1.22670 0.99678 0.93477 0.92723 1.19405 0.83144 0.91439 0.90517 0.93873 1.86595 1.18366 1.40409 1.92546 1.21865 1.49034 0.95609 0.94142 0.94452 1.25819 0.93056 1.01957 0.96060 1.70077 1.49227 1.35842 1.02694 0.86004 0.78163 0.80800 0.78863 1.21232 1.22226 1.12862 1.22655 1.01021 0.94882 0.88206 1.23473 0.94508 0.98228 1.00093 0.85683 0.95332 0.89564 0.90861 0.91303 0.89692 0.94844 0.94373 0.91101 0.91070 0.95289 0.78754 0.92394 0.89061 0.93930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 9.54 127.69 1.22 1.56 16 2 N -0.52 -9.77 5.23 -923.28 -4.82 -14.59 16 3 C 0.02 0.26 8.28 127.69 1.06 1.32 16 4 C 0.06 1.28 5.67 44.92 0.25 1.54 16 5 H 0.11 2.46 8.04 -2.38 -0.02 2.44 16 6 C -0.19 -4.69 5.96 -9.90 -0.06 -4.75 16 7 H 0.13 2.87 6.10 -2.39 -0.01 2.86 16 8 C 0.06 1.93 5.72 86.45 0.49 2.42 16 9 N -0.51 -17.19 5.20 -881.53 -4.59 -21.77 16 10 C 0.04 1.69 4.43 86.30 0.38 2.07 16 11 C 0.21 9.98 2.37 29.85 0.07 10.05 16 12 H 0.04 2.10 6.90 -2.38 -0.02 2.08 16 13 O -0.57 -25.96 10.00 -148.98 -1.49 -27.44 16 14 C -0.57 -32.18 9.34 25.60 0.24 -31.94 16 15 H 0.04 2.31 7.99 -2.91 -0.02 2.29 16 16 C 0.03 1.80 5.47 84.66 0.46 2.27 16 17 N -0.94 -58.69 13.96 21.45 0.30 -58.39 16 18 Si 0.94 45.83 26.99 68.60 1.85 47.69 16 19 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 20 H -0.30 -14.34 7.11 99.48 0.71 -13.63 16 21 H -0.21 -9.76 5.30 99.48 0.53 -9.23 16 22 C 0.06 1.64 6.26 86.45 0.54 2.18 16 23 C -0.14 -3.38 6.47 -9.90 -0.06 -3.44 16 24 H 0.13 2.73 7.85 -2.38 -0.02 2.71 16 25 H 0.03 0.44 8.14 -2.39 -0.02 0.42 16 26 H 0.09 1.00 8.12 -2.39 -0.02 0.98 16 27 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.07 1.14 7.17 -2.39 -0.02 1.12 16 29 H 0.08 1.07 8.12 -2.39 -0.02 1.05 16 30 H 0.03 0.55 6.90 -2.39 -0.02 0.53 16 31 H 0.04 1.20 7.75 -2.39 -0.02 1.18 16 32 H 0.07 2.38 7.85 -2.38 -0.02 2.36 16 33 H 0.07 2.76 8.08 -2.38 -0.02 2.74 16 34 H 0.03 1.16 7.77 -2.39 -0.02 1.14 16 35 H 0.37 14.83 9.04 -74.06 -0.67 14.16 16 36 H 0.27 15.68 8.31 -92.71 -0.77 14.91 16 37 H 0.09 2.34 8.14 -2.39 -0.02 2.33 16 38 H 0.04 1.15 8.00 -2.39 -0.02 1.13 16 Total: -1.00 -65.76 298.80 -3.97 -69.73 By element: Atomic # 1 Polarization: 21.33 SS G_CDS: 0.18 Total: 21.51 kcal Atomic # 6 Polarization: -21.32 SS G_CDS: 4.60 Total: -16.72 kcal Atomic # 7 Polarization: -85.64 SS G_CDS: -9.11 Total: -94.76 kcal Atomic # 8 Polarization: -25.96 SS G_CDS: -1.49 Total: -27.44 kcal Atomic # 14 Polarization: 45.83 SS G_CDS: 1.85 Total: 47.69 kcal Total: -65.76 -3.97 -69.73 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931276679.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.070 kcal (2) G-P(sol) polarization free energy of solvation -65.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds