Wall clock time and date at job start Mon Mar 30 2020 17:58:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86796 * 119.99912 * 2 1 4 4 H 1.48497 * 109.47395 * 270.00044 * 3 2 1 5 5 H 1.48500 * 109.47359 * 30.00463 * 3 2 1 6 6 H 1.48507 * 109.47194 * 150.00031 * 3 2 1 7 7 C 1.37871 * 119.99668 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00520 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99640 * 179.97438 * 7 2 1 10 10 O 1.42899 * 113.26056 * 312.95142 * 9 7 2 11 11 C 1.53519 * 114.16967 * 180.02562 * 9 7 2 12 12 N 1.47483 * 87.93056 * 220.33011 * 11 9 7 13 13 C 1.46901 * 111.00057 * 138.70316 * 12 11 9 14 14 C 1.52999 * 109.47114 * 169.99796 * 13 12 11 15 15 H 1.09002 * 109.52356 * 305.00123 * 14 13 12 16 16 C 1.53185 * 109.57233 * 184.84245 * 14 13 12 17 17 C 1.53183 * 109.03189 * 183.08282 * 16 14 13 18 18 C 1.53089 * 109.16135 * 56.98342 * 17 16 14 19 19 O 1.42896 * 109.41625 * 302.38470 * 18 17 16 20 20 C 1.42900 * 114.09793 * 61.16321 * 19 18 17 21 21 C 1.47480 * 87.83728 * 27.01057 * 12 11 9 22 22 H 0.96999 * 120.00065 * 359.97438 * 1 2 3 23 23 H 0.96702 * 113.99647 * 47.04963 * 10 9 7 24 24 H 1.09000 * 113.47866 * 105.56484 * 11 9 7 25 25 H 1.08996 * 113.53040 * 335.09923 * 11 9 7 26 26 H 1.08999 * 109.47177 * 49.99688 * 13 12 11 27 27 H 1.09001 * 109.47150 * 290.00027 * 13 12 11 28 28 H 1.08993 * 109.54147 * 302.94797 * 16 14 13 29 29 H 1.08994 * 109.54148 * 63.21891 * 16 14 13 30 30 H 1.08993 * 109.52144 * 297.07522 * 17 16 14 31 31 H 1.09004 * 109.51827 * 176.88441 * 17 16 14 32 32 H 1.09010 * 109.47660 * 182.40651 * 18 17 16 33 33 H 1.09000 * 109.49364 * 62.37905 * 18 17 16 34 34 H 1.08999 * 109.48607 * 178.86157 * 20 19 18 35 35 H 1.08997 * 109.48159 * 58.82340 * 20 19 18 36 36 H 1.09000 * 113.47966 * 87.75498 * 21 12 11 37 37 H 1.09007 * 113.47449 * 218.22376 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4402 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 8 4.0754 -0.2993 -0.9620 11 6 4.1400 -2.5946 -0.0023 12 7 5.1437 -2.0866 0.9515 13 6 5.4153 -3.0734 2.0053 14 6 6.6271 -2.6245 2.8243 15 1 7.4739 -2.4555 2.1591 16 6 6.9865 -3.7085 3.8453 17 6 8.1512 -3.2146 4.7091 18 6 7.7569 -1.8948 5.3773 19 8 7.4051 -0.9407 4.3734 20 6 6.2918 -1.3275 3.5654 21 6 4.1406 -1.1012 1.3961 22 1 -0.4850 0.8400 0.0004 23 1 3.6777 0.5822 -0.9595 24 1 4.5622 -2.8803 -0.9657 25 1 3.4914 -3.3630 0.4182 26 1 5.6225 -4.0424 1.5511 27 1 4.5462 -3.1566 2.6580 28 1 6.1237 -3.9129 4.4790 29 1 7.2806 -4.6185 3.3226 30 1 9.0287 -3.0575 4.0820 31 1 8.3774 -3.9570 5.4745 32 1 8.5975 -1.5168 5.9594 33 1 6.9043 -2.0610 6.0357 34 1 6.0767 -0.5409 2.8421 35 1 5.4199 -1.4864 4.1999 36 1 3.4913 -1.4703 2.1900 37 1 4.5632 -0.1211 1.6178 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331995310.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:58:33 Heat of formation + Delta-G solvation = -53.372138 kcal Electronic energy + Delta-G solvation = -18253.571341 eV Core-core repulsion = 15418.317031 eV Total energy + Delta-G solvation = -2835.254310 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -39.96148 -38.85541 -35.29726 -33.80507 -32.44407 -31.77608 -28.34063 -25.93243 -25.59592 -24.57077 -23.27614 -21.11904 -20.06270 -19.04495 -17.32572 -16.36331 -16.26520 -15.89430 -15.31121 -14.87640 -14.57653 -14.28562 -13.70009 -13.31189 -13.09450 -12.82774 -12.65758 -12.56983 -12.08709 -11.82543 -11.55753 -11.20411 -11.08916 -10.91118 -10.54873 -10.40024 -10.27521 -10.21266 -9.96773 -9.38094 -9.24876 -8.92402 -8.54215 -8.12956 -6.34568 -4.38677 3.06796 3.14896 3.22008 3.94398 4.11879 4.48307 4.74592 4.77894 4.81977 4.93035 5.00556 5.20788 5.37763 5.39400 5.46291 5.54464 5.67272 5.71263 5.76386 5.80956 5.89383 5.89805 6.00447 6.06787 6.19084 6.24930 6.44840 6.48702 6.62427 6.86390 6.92122 7.26653 7.31377 7.75659 8.11936 8.67391 8.68351 9.24898 10.77985 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.035887 B = 0.006384 C = 0.005967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.036245 B = 4384.664200 C = 4691.383906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.077 3.923 3 Si 0.860 3.140 4 H -0.267 1.267 5 H -0.286 1.286 6 H -0.254 1.254 7 C -0.534 4.534 8 H 0.086 0.914 9 C 0.202 3.798 10 O -0.548 6.548 11 C 0.018 3.982 12 N -0.471 5.471 13 C 0.023 3.977 14 C -0.111 4.111 15 H 0.084 0.916 16 C -0.118 4.118 17 C -0.154 4.154 18 C 0.058 3.942 19 O -0.384 6.384 20 C 0.064 3.936 21 C -0.035 4.035 22 H 0.269 0.731 23 H 0.348 0.652 24 H 0.076 0.924 25 H 0.072 0.928 26 H 0.069 0.931 27 H 0.044 0.956 28 H 0.062 0.938 29 H 0.066 0.934 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.089 0.911 33 H 0.047 0.953 34 H 0.103 0.897 35 H 0.045 0.955 36 H 0.072 0.928 37 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.199 -4.881 8.874 15.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.127 4.127 3 Si 0.689 3.311 4 H -0.194 1.194 5 H -0.213 1.213 6 H -0.179 1.179 7 C -0.572 4.572 8 H 0.104 0.896 9 C 0.161 3.839 10 O -0.358 6.358 11 C -0.110 4.110 12 N -0.193 5.193 13 C -0.106 4.106 14 C -0.130 4.130 15 H 0.103 0.897 16 C -0.156 4.156 17 C -0.192 4.192 18 C -0.019 4.019 19 O -0.303 6.303 20 C -0.012 4.012 21 C -0.165 4.165 22 H 0.079 0.921 23 H 0.200 0.800 24 H 0.095 0.905 25 H 0.090 0.910 26 H 0.087 0.913 27 H 0.062 0.938 28 H 0.080 0.920 29 H 0.085 0.915 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.107 0.893 33 H 0.065 0.935 34 H 0.121 0.879 35 H 0.064 0.936 36 H 0.090 0.910 37 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 13.159 -4.922 8.514 16.427 hybrid contribution -0.935 0.668 0.602 1.298 sum 12.223 -4.254 9.116 15.830 Atomic orbital electron populations 1.69871 1.06108 1.27486 1.48375 1.25010 0.94912 0.99110 0.93672 0.87290 0.80519 0.84124 0.79138 1.19388 1.21278 1.17910 1.21318 0.88297 0.95364 1.52240 0.89592 1.20071 0.91845 0.87431 0.84524 1.86466 1.64432 1.24659 1.60291 1.23897 0.92517 0.97605 0.97013 1.68894 1.30941 1.09501 1.09991 1.22655 0.96806 0.96680 0.94449 1.21687 0.99384 0.95287 0.96628 0.89729 1.21633 0.98046 0.98375 0.97539 1.22170 0.99225 0.97831 0.99933 1.22544 0.99762 0.89288 0.90279 1.87945 1.50940 1.43836 1.47556 1.22804 0.87561 0.97580 0.93275 1.25071 0.93055 0.96852 1.01495 0.92072 0.80045 0.90517 0.90988 0.91288 0.93812 0.91967 0.91516 0.91104 0.91200 0.89327 0.93499 0.87881 0.93621 0.90975 0.91206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.66 13.96 55.43 0.77 -24.89 16 2 C 0.08 2.13 5.47 -17.82 -0.10 2.03 16 3 Si 0.86 20.12 24.41 -169.99 -4.15 15.97 16 4 H -0.27 -6.06 7.06 56.52 0.40 -5.67 16 5 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.25 -5.70 5.47 56.52 0.31 -5.39 16 7 C -0.53 -14.52 9.26 -34.44 -0.32 -14.84 16 8 H 0.09 2.49 8.06 -52.49 -0.42 2.07 16 9 C 0.20 4.84 1.09 -91.24 -0.10 4.74 16 10 O -0.55 -13.65 13.33 -35.23 -0.47 -14.12 16 11 C 0.02 0.38 7.09 -7.53 -0.05 0.33 16 12 N -0.47 -9.09 6.16 -244.60 -1.51 -10.60 16 13 C 0.02 0.36 4.39 -3.82 -0.02 0.35 16 14 C -0.11 -1.56 2.59 -90.48 -0.23 -1.79 16 15 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 16 C -0.12 -1.32 5.32 -26.54 -0.14 -1.47 16 17 C -0.15 -1.55 6.14 -26.59 -0.16 -1.72 16 18 C 0.06 0.65 6.84 37.20 0.25 0.90 16 19 O -0.38 -5.73 10.76 -35.23 -0.38 -6.11 16 20 C 0.06 0.97 5.42 37.21 0.20 1.17 16 21 C -0.04 -0.75 5.03 -7.54 -0.04 -0.79 16 22 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 23 H 0.35 8.34 3.17 45.56 0.14 8.48 16 24 H 0.08 1.56 8.14 -51.93 -0.42 1.13 16 25 H 0.07 1.41 7.87 -51.93 -0.41 1.00 16 26 H 0.07 1.00 8.08 -51.93 -0.42 0.58 16 27 H 0.04 0.68 7.30 -51.93 -0.38 0.30 16 28 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 29 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.09 0.83 8.14 -51.92 -0.42 0.40 16 33 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.10 1.75 6.06 -51.93 -0.31 1.44 16 35 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 36 H 0.07 1.49 7.37 -51.93 -0.38 1.11 16 37 H 0.07 1.49 6.14 -51.93 -0.32 1.17 16 LS Contribution 282.57 15.07 4.26 4.26 Total: -1.00 -29.34 282.57 -7.72 -37.05 By element: Atomic # 1 Polarization: 15.04 SS G_CDS: -5.54 Total: 9.51 kcal Atomic # 6 Polarization: -10.37 SS G_CDS: -0.71 Total: -11.08 kcal Atomic # 7 Polarization: -34.75 SS G_CDS: -0.73 Total: -35.48 kcal Atomic # 8 Polarization: -19.38 SS G_CDS: -0.85 Total: -20.23 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -4.15 Total: 15.97 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -29.34 -7.72 -37.05 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331995310.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.318 kcal (2) G-P(sol) polarization free energy of solvation -29.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds