Wall clock time and date at job start Mon Mar 30 2020 17:58:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86796 * 119.99912 * 2 1 4 4 H 1.48497 * 109.47395 * 270.00044 * 3 2 1 5 5 H 1.48500 * 109.47359 * 30.00463 * 3 2 1 6 6 H 1.48507 * 109.47194 * 150.00031 * 3 2 1 7 7 C 1.37871 * 119.99668 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00520 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99640 * 179.97438 * 7 2 1 10 10 O 1.42899 * 113.26056 * 312.95142 * 9 7 2 11 11 C 1.53519 * 114.16967 * 180.02562 * 9 7 2 12 12 N 1.47483 * 87.93056 * 220.33011 * 11 9 7 13 13 C 1.46901 * 111.00057 * 138.70316 * 12 11 9 14 14 C 1.52999 * 109.47114 * 169.99796 * 13 12 11 15 15 H 1.09002 * 109.52356 * 305.00123 * 14 13 12 16 16 C 1.53185 * 109.57233 * 184.84245 * 14 13 12 17 17 C 1.53183 * 109.03189 * 183.08282 * 16 14 13 18 18 C 1.53089 * 109.16135 * 56.98342 * 17 16 14 19 19 O 1.42896 * 109.41625 * 302.38470 * 18 17 16 20 20 C 1.42900 * 114.09793 * 61.16321 * 19 18 17 21 21 C 1.47480 * 87.83728 * 27.01057 * 12 11 9 22 22 H 0.96999 * 120.00065 * 359.97438 * 1 2 3 23 23 H 0.96702 * 113.99647 * 47.04963 * 10 9 7 24 24 H 1.09000 * 113.47866 * 105.56484 * 11 9 7 25 25 H 1.08996 * 113.53040 * 335.09923 * 11 9 7 26 26 H 1.08999 * 109.47177 * 49.99688 * 13 12 11 27 27 H 1.09001 * 109.47150 * 290.00027 * 13 12 11 28 28 H 1.08993 * 109.54147 * 302.94797 * 16 14 13 29 29 H 1.08994 * 109.54148 * 63.21891 * 16 14 13 30 30 H 1.08993 * 109.52144 * 297.07522 * 17 16 14 31 31 H 1.09004 * 109.51827 * 176.88441 * 17 16 14 32 32 H 1.09010 * 109.47660 * 182.40651 * 18 17 16 33 33 H 1.09000 * 109.49364 * 62.37905 * 18 17 16 34 34 H 1.08999 * 109.48607 * 178.86157 * 20 19 18 35 35 H 1.08997 * 109.48159 * 58.82340 * 20 19 18 36 36 H 1.09000 * 113.47966 * 87.75498 * 21 12 11 37 37 H 1.09007 * 113.47449 * 218.22376 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4402 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 8 4.0754 -0.2993 -0.9620 11 6 4.1400 -2.5946 -0.0023 12 7 5.1437 -2.0866 0.9515 13 6 5.4153 -3.0734 2.0053 14 6 6.6271 -2.6245 2.8243 15 1 7.4739 -2.4555 2.1591 16 6 6.9865 -3.7085 3.8453 17 6 8.1512 -3.2146 4.7091 18 6 7.7569 -1.8948 5.3773 19 8 7.4051 -0.9407 4.3734 20 6 6.2918 -1.3275 3.5654 21 6 4.1406 -1.1012 1.3961 22 1 -0.4850 0.8400 0.0004 23 1 3.6777 0.5822 -0.9595 24 1 4.5622 -2.8803 -0.9657 25 1 3.4914 -3.3630 0.4182 26 1 5.6225 -4.0424 1.5511 27 1 4.5462 -3.1566 2.6580 28 1 6.1237 -3.9129 4.4790 29 1 7.2806 -4.6185 3.3226 30 1 9.0287 -3.0575 4.0820 31 1 8.3774 -3.9570 5.4745 32 1 8.5975 -1.5168 5.9594 33 1 6.9043 -2.0610 6.0357 34 1 6.0767 -0.5409 2.8421 35 1 5.4199 -1.4864 4.1999 36 1 3.4913 -1.4703 2.1900 37 1 4.5632 -0.1211 1.6178 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331995310.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:58:32 Heat of formation + Delta-G solvation = -77.485180 kcal Electronic energy + Delta-G solvation = -18254.616961 eV Core-core repulsion = 15418.317031 eV Total energy + Delta-G solvation = -2836.299930 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 1.62 seconds Orbital eigenvalues (eV) -41.45960 -40.07356 -36.98999 -35.01162 -34.54707 -32.84374 -29.95029 -27.61119 -27.08851 -25.74654 -24.67101 -22.37757 -21.22893 -20.70170 -19.34650 -18.19539 -17.37643 -17.14716 -16.79083 -16.13728 -15.72542 -15.64450 -15.31589 -14.94935 -14.68510 -14.31867 -14.14661 -13.81157 -13.55226 -13.24414 -12.93622 -12.75293 -12.41505 -12.22932 -12.04370 -11.97776 -11.78685 -11.49655 -11.23549 -11.11570 -10.92004 -10.45613 -10.33027 -9.75795 -8.46148 -6.55451 1.20258 1.27166 1.35458 2.14320 2.76939 2.94145 3.02350 3.48058 3.72367 3.83376 3.92190 4.00095 4.04966 4.11842 4.27342 4.29026 4.48609 4.52252 4.57597 4.68903 4.72212 4.75339 4.85313 4.92365 4.96522 5.05622 5.08955 5.11714 5.24326 5.31901 5.35900 5.43058 6.00588 6.21564 6.25842 6.49075 6.74887 7.12157 8.69705 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.035887 B = 0.006384 C = 0.005967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.036245 B = 4384.664200 C = 4691.383906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.026 3.974 3 Si 0.919 3.081 4 H -0.254 1.254 5 H -0.282 1.282 6 H -0.240 1.240 7 C -0.543 4.543 8 H 0.052 0.948 9 C 0.181 3.819 10 O -0.555 6.555 11 C 0.024 3.976 12 N -0.470 5.470 13 C 0.023 3.977 14 C -0.104 4.104 15 H 0.072 0.928 16 C -0.115 4.115 17 C -0.149 4.149 18 C 0.048 3.952 19 O -0.406 6.406 20 C 0.066 3.934 21 C -0.021 4.021 22 H 0.273 0.727 23 H 0.349 0.651 24 H 0.081 0.919 25 H 0.080 0.920 26 H 0.086 0.914 27 H 0.046 0.954 28 H 0.068 0.932 29 H 0.080 0.920 30 H 0.067 0.933 31 H 0.096 0.904 32 H 0.107 0.893 33 H 0.054 0.946 34 H 0.078 0.922 35 H 0.048 0.952 36 H 0.073 0.927 37 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.222 -5.263 10.033 18.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.175 4.175 3 Si 0.744 3.256 4 H -0.179 1.179 5 H -0.208 1.208 6 H -0.164 1.164 7 C -0.581 4.581 8 H 0.070 0.930 9 C 0.140 3.860 10 O -0.366 6.366 11 C -0.104 4.104 12 N -0.193 5.193 13 C -0.105 4.105 14 C -0.123 4.123 15 H 0.091 0.909 16 C -0.153 4.153 17 C -0.187 4.187 18 C -0.028 4.028 19 O -0.325 6.325 20 C -0.011 4.011 21 C -0.151 4.151 22 H 0.082 0.918 23 H 0.202 0.798 24 H 0.099 0.901 25 H 0.098 0.902 26 H 0.104 0.896 27 H 0.064 0.936 28 H 0.087 0.913 29 H 0.098 0.902 30 H 0.085 0.915 31 H 0.115 0.885 32 H 0.125 0.875 33 H 0.073 0.927 34 H 0.097 0.903 35 H 0.066 0.934 36 H 0.091 0.909 37 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 15.201 -5.322 9.676 18.789 hybrid contribution -1.574 0.700 0.263 1.742 sum 13.628 -4.622 9.939 17.489 Atomic orbital electron populations 1.70000 1.07837 1.28651 1.49988 1.25799 0.95635 1.02813 0.93229 0.86319 0.79712 0.79550 0.80024 1.17925 1.20836 1.16448 1.21496 0.90322 0.94251 1.52027 0.92950 1.20257 0.90125 0.89475 0.86136 1.86459 1.64321 1.24949 1.60886 1.23836 0.92757 0.95943 0.97897 1.68851 1.29569 1.10017 1.10816 1.22745 0.97648 0.96428 0.93722 1.21612 0.97981 0.95890 0.96850 0.90938 1.21632 0.98853 0.97710 0.97065 1.22153 0.98416 0.97795 1.00287 1.22836 1.00801 0.89376 0.89762 1.87909 1.50708 1.45502 1.48409 1.22664 0.88020 0.97244 0.93129 1.24823 0.93174 0.97575 0.99479 0.91812 0.79835 0.90103 0.90219 0.89574 0.93551 0.91327 0.90160 0.91465 0.88507 0.87488 0.92719 0.90342 0.93401 0.90911 0.91343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.09 13.96 21.45 0.30 -54.79 16 2 C 0.03 1.43 5.47 84.65 0.46 1.89 16 3 Si 0.92 41.32 24.41 68.60 1.67 42.99 16 4 H -0.25 -10.81 7.06 99.48 0.70 -10.11 16 5 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 6 H -0.24 -10.19 5.47 99.48 0.54 -9.65 16 7 C -0.54 -30.05 9.26 25.60 0.24 -29.81 16 8 H 0.05 3.16 8.06 -2.91 -0.02 3.13 16 9 C 0.18 8.58 1.09 -11.19 -0.01 8.57 16 10 O -0.55 -27.08 13.33 -148.98 -1.99 -29.06 16 11 C 0.02 0.99 7.09 83.58 0.59 1.58 16 12 N -0.47 -17.46 6.16 -928.15 -5.72 -23.18 16 13 C 0.02 0.68 4.39 86.30 0.38 1.06 16 14 C -0.10 -2.72 2.59 -10.70 -0.03 -2.74 16 15 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 16 C -0.11 -2.21 5.32 30.72 0.16 -2.05 16 17 C -0.15 -2.50 6.14 30.69 0.19 -2.32 16 18 C 0.05 0.95 6.84 72.01 0.49 1.44 16 19 O -0.41 -11.47 10.76 -148.98 -1.60 -13.08 16 20 C 0.07 1.91 5.42 72.01 0.39 2.30 16 21 C -0.02 -0.87 5.03 83.58 0.42 -0.45 16 22 H 0.27 15.07 8.31 -92.71 -0.77 14.30 16 23 H 0.35 16.23 3.17 -74.06 -0.23 16.00 16 24 H 0.08 3.19 8.14 -2.39 -0.02 3.17 16 25 H 0.08 3.06 7.87 -2.39 -0.02 3.04 16 26 H 0.09 2.24 8.08 -2.39 -0.02 2.22 16 27 H 0.05 1.35 7.30 -2.39 -0.02 1.33 16 28 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 29 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.11 1.68 8.14 -2.38 -0.02 1.66 16 33 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.08 2.63 6.06 -2.39 -0.01 2.61 16 35 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 36 H 0.07 2.97 7.37 -2.39 -0.02 2.95 16 37 H 0.07 2.85 6.14 -2.38 -0.01 2.83 16 Total: -1.00 -63.24 282.57 -3.40 -66.64 By element: Atomic # 1 Polarization: 30.35 SS G_CDS: 0.65 Total: 31.00 kcal Atomic # 6 Polarization: -23.82 SS G_CDS: 3.29 Total: -20.53 kcal Atomic # 7 Polarization: -72.54 SS G_CDS: -5.42 Total: -77.96 kcal Atomic # 8 Polarization: -38.55 SS G_CDS: -3.59 Total: -42.14 kcal Atomic # 14 Polarization: 41.32 SS G_CDS: 1.67 Total: 42.99 kcal Total: -63.24 -3.40 -66.64 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331995310.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.849 kcal (2) G-P(sol) polarization free energy of solvation -63.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.62 seconds