Wall clock time and date at job start Mon Mar 30 2020 17:56:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 120.00121 * 2 1 4 4 H 1.48503 * 109.46899 * 269.99475 * 3 2 1 5 5 H 1.48494 * 109.47200 * 30.00030 * 3 2 1 6 6 H 1.48508 * 109.47239 * 150.00009 * 3 2 1 7 7 C 1.37877 * 119.99748 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99895 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00061 * 0.02562 * 7 2 1 10 10 O 1.42890 * 113.25729 * 312.94645 * 9 7 2 11 11 C 1.53514 * 114.17149 * 179.97438 * 9 7 2 12 12 N 1.47483 * 87.93413 * 220.33126 * 11 9 7 13 13 C 1.46896 * 111.00551 * 138.70276 * 12 11 9 14 14 C 1.52992 * 109.47509 * 169.99952 * 13 12 11 15 15 C 1.53002 * 109.47402 * 179.97438 * 14 13 12 16 16 H 1.08993 * 110.55151 * 307.88070 * 15 14 13 17 17 C 1.54991 * 110.61707 * 184.99860 * 15 14 13 18 18 C 1.54810 * 102.09350 * 204.31975 * 17 15 14 19 19 C 1.54106 * 104.18526 * 20.88072 * 18 17 15 20 20 O 1.43745 * 107.29161 * 2.03378 * 19 18 17 21 21 C 1.47485 * 87.83655 * 27.00598 * 12 11 9 22 22 H 0.97005 * 119.99812 * 0.02562 * 1 2 3 23 23 H 0.96703 * 114.00008 * 47.05358 * 10 9 7 24 24 H 1.08993 * 113.48203 * 105.55912 * 11 9 7 25 25 H 1.09002 * 113.52747 * 335.09983 * 11 9 7 26 26 H 1.09003 * 109.47246 * 49.99421 * 13 12 11 27 27 H 1.09000 * 109.46791 * 290.00285 * 13 12 11 28 28 H 1.09003 * 109.47299 * 59.99502 * 14 13 12 29 29 H 1.09001 * 109.47126 * 300.00476 * 14 13 12 30 30 H 1.09005 * 110.90880 * 86.12205 * 17 15 14 31 31 H 1.09001 * 110.94109 * 322.52741 * 17 15 14 32 32 H 1.09000 * 110.49118 * 262.21058 * 18 17 15 33 33 H 1.08999 * 110.49045 * 139.55798 * 18 17 15 34 34 H 1.09004 * 109.87542 * 121.45649 * 19 18 17 35 35 H 1.09000 * 109.87721 * 242.60820 * 19 18 17 36 36 H 1.09004 * 113.47076 * 87.75803 * 21 12 11 37 37 H 1.08992 * 113.47928 * 218.22649 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 8 0.1939 -2.5403 0.9611 11 6 2.1495 -3.7438 0.0005 12 7 1.2074 -4.3584 -0.9534 13 6 1.9257 -5.0863 -2.0079 14 6 0.9307 -5.9107 -2.8271 15 6 1.6788 -6.6684 -3.9258 16 1 2.3024 -5.9867 -4.5041 17 6 0.6826 -7.4139 -4.8500 18 6 1.5616 -8.5517 -5.4237 19 6 2.7219 -8.6766 -4.4172 20 8 2.4757 -7.7321 -3.3619 21 6 0.8553 -2.9966 -1.3969 22 1 -0.4850 0.8401 -0.0004 23 1 -0.3707 -1.7552 0.9586 24 1 2.1863 -4.2529 0.9636 25 1 3.1392 -3.5660 -0.4203 26 1 2.6614 -5.7505 -1.5544 27 1 2.4320 -4.3748 -2.6602 28 1 0.1950 -5.2465 -3.2805 29 1 0.4244 -6.6221 -2.1747 30 1 0.3255 -6.7595 -5.6453 31 1 -0.1521 -7.8183 -4.2774 32 1 1.9395 -8.2817 -6.4098 33 1 0.9968 -9.4827 -5.4723 34 1 2.7524 -9.6874 -4.0103 35 1 3.6663 -8.4444 -4.9096 36 1 1.4994 -2.6184 -2.1908 37 1 -0.2047 -2.8724 -1.6180 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001653387607.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:56:07 Heat of formation + Delta-G solvation = -67.246449 kcal Electronic energy + Delta-G solvation = -17601.769076 eV Core-core repulsion = 14765.913131 eV Total energy + Delta-G solvation = -2835.855945 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.57060 -38.91609 -34.59646 -32.62984 -32.08545 -31.96484 -28.63467 -26.42809 -24.83935 -24.24765 -22.01529 -21.18768 -20.57849 -18.55570 -17.20301 -16.65981 -15.89665 -15.39595 -15.08347 -14.70784 -14.29716 -14.02605 -13.77491 -13.29224 -12.93050 -12.43259 -11.98039 -11.83089 -11.80474 -11.50666 -11.48321 -11.32830 -11.01008 -10.94715 -10.77081 -10.48058 -10.37933 -10.06948 -9.83808 -9.66158 -9.20131 -8.62119 -8.12336 -7.82279 -6.24577 -4.34116 3.20382 3.27948 3.31820 3.84350 4.26576 4.44204 4.57220 4.77570 4.91295 4.98537 5.13391 5.20942 5.41043 5.47126 5.53183 5.61071 5.66044 5.77681 5.83767 5.97105 6.06356 6.12432 6.15305 6.21941 6.37428 6.51089 6.58539 6.76633 6.94490 7.09271 7.26472 7.40558 7.79380 8.00588 8.11380 8.68122 9.35870 9.72857 10.81401 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.045570 B = 0.004534 C = 0.004464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 614.292661 B = 6173.895796 C = 6270.727409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.070 3.930 3 Si 0.904 3.096 4 H -0.279 1.279 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.534 4.534 8 H 0.066 0.934 9 C 0.246 3.754 10 O -0.570 6.570 11 C 0.005 3.995 12 N -0.473 5.473 13 C 0.021 3.979 14 C -0.100 4.100 15 C 0.077 3.923 16 H 0.067 0.933 17 C -0.150 4.150 18 C -0.157 4.157 19 C 0.046 3.954 20 O -0.371 6.371 21 C -0.021 4.021 22 H 0.271 0.729 23 H 0.389 0.611 24 H 0.070 0.930 25 H 0.062 0.938 26 H 0.067 0.933 27 H 0.036 0.964 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.072 0.928 33 H 0.075 0.925 34 H 0.080 0.920 35 H 0.055 0.945 36 H 0.057 0.943 37 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.402 -11.658 -10.188 15.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.131 4.131 3 Si 0.731 3.269 4 H -0.205 1.205 5 H -0.209 1.209 6 H -0.196 1.196 7 C -0.572 4.572 8 H 0.084 0.916 9 C 0.204 3.796 10 O -0.382 6.382 11 C -0.124 4.124 12 N -0.195 5.195 13 C -0.108 4.108 14 C -0.138 4.138 15 C 0.019 3.981 16 H 0.085 0.915 17 C -0.188 4.188 18 C -0.194 4.194 19 C -0.032 4.032 20 O -0.291 6.291 21 C -0.151 4.151 22 H 0.081 0.919 23 H 0.245 0.755 24 H 0.088 0.912 25 H 0.080 0.920 26 H 0.086 0.914 27 H 0.054 0.946 28 H 0.093 0.907 29 H 0.094 0.906 30 H 0.097 0.903 31 H 0.097 0.903 32 H 0.091 0.909 33 H 0.093 0.907 34 H 0.098 0.902 35 H 0.073 0.927 36 H 0.076 0.924 37 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 2.066 -12.617 -9.616 15.997 hybrid contribution 0.842 1.830 -0.997 2.248 sum 2.908 -10.787 -10.613 15.409 Atomic orbital electron populations 1.69302 1.06118 1.27769 1.50791 1.25063 0.94979 0.99654 0.93443 0.86400 0.79868 0.82369 0.78239 1.20466 1.20891 1.19646 1.21612 0.93697 0.90633 1.51284 0.91593 1.19370 0.85134 0.90640 0.84461 1.86030 1.45230 1.48040 1.58899 1.24029 0.95276 0.96431 0.96696 1.68850 1.27074 1.13661 1.09957 1.22615 0.96026 0.97534 0.94655 1.21465 0.97878 0.98396 0.96077 1.23231 0.91088 0.89473 0.94291 0.91468 1.23172 0.98901 0.97238 0.99515 1.22935 0.97301 0.99756 0.99454 1.23108 0.97196 0.94002 0.88847 1.88934 1.72781 1.33937 1.33422 1.24734 1.00669 0.87937 1.01720 0.91862 0.75502 0.91185 0.91960 0.91438 0.94561 0.90687 0.90560 0.90273 0.90257 0.90898 0.90666 0.90161 0.92708 0.92440 0.91494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.37 11.02 55.43 0.61 -23.76 16 2 C 0.07 1.87 5.39 -17.82 -0.10 1.78 16 3 Si 0.90 20.50 29.54 -169.99 -5.02 15.48 16 4 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 5 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 6 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 7 C -0.53 -14.51 8.68 -34.44 -0.30 -14.81 16 8 H 0.07 1.75 7.81 -52.49 -0.41 1.34 16 9 C 0.25 6.42 1.57 -91.24 -0.14 6.28 16 10 O -0.57 -15.89 13.54 -35.23 -0.48 -16.37 16 11 C 0.00 0.10 7.10 -7.53 -0.05 0.05 16 12 N -0.47 -10.37 6.33 -244.59 -1.55 -11.92 16 13 C 0.02 0.38 4.76 -3.83 -0.02 0.36 16 14 C -0.10 -1.55 5.30 -26.73 -0.14 -1.69 16 15 C 0.08 1.01 3.28 -25.68 -0.08 0.92 16 16 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 17 C -0.15 -1.56 6.58 -24.73 -0.16 -1.72 16 18 C -0.16 -1.37 7.01 -25.20 -0.18 -1.55 16 19 C 0.05 0.47 7.70 37.74 0.29 0.76 16 20 O -0.37 -5.30 11.09 -35.23 -0.39 -5.69 16 21 C -0.02 -0.50 7.13 -7.53 -0.05 -0.56 16 22 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 23 H 0.39 10.96 6.33 45.56 0.29 11.24 16 24 H 0.07 1.60 8.14 -51.93 -0.42 1.18 16 25 H 0.06 1.35 7.87 -51.93 -0.41 0.94 16 26 H 0.07 1.23 8.00 -51.93 -0.42 0.81 16 27 H 0.04 0.65 7.30 -51.93 -0.38 0.27 16 28 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 29 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 30 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.08 0.83 8.06 -51.93 -0.42 0.41 16 32 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.06 1.33 7.37 -51.93 -0.38 0.95 16 37 H 0.07 1.65 8.14 -51.93 -0.42 1.22 16 LS Contribution 299.83 15.07 4.52 4.52 Total: -1.00 -28.82 299.83 -8.74 -37.56 By element: Atomic # 1 Polarization: 15.86 SS G_CDS: -5.49 Total: 10.37 kcal Atomic # 6 Polarization: -9.24 SS G_CDS: -0.94 Total: -10.18 kcal Atomic # 7 Polarization: -34.74 SS G_CDS: -0.94 Total: -35.68 kcal Atomic # 8 Polarization: -21.19 SS G_CDS: -0.87 Total: -22.06 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -28.82 -8.74 -37.56 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001653387607.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.691 kcal (2) G-P(sol) polarization free energy of solvation -28.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds