Wall clock time and date at job start Mon Mar 30 2020 17:56:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47145 * 2 1 4 4 H 1.09001 * 109.47461 * 174.27797 * 3 2 1 5 5 C 1.50708 * 109.46800 * 54.28339 * 3 2 1 6 6 H 1.08003 * 119.99840 * 244.83234 * 5 3 2 7 7 C 1.37870 * 119.99787 * 64.83308 * 5 3 2 8 8 N 1.31520 * 119.99903 * 196.62029 * 7 5 3 9 9 Si 1.86799 * 120.00451 * 16.62532 * 7 5 3 10 10 H 1.48497 * 109.47358 * 86.76562 * 9 7 5 11 11 H 1.48501 * 109.47188 * 206.77045 * 9 7 5 12 12 H 1.48500 * 109.46886 * 326.76633 * 9 7 5 13 13 N 1.46903 * 109.47642 * 294.28569 * 3 2 1 14 14 C 1.46902 * 110.99552 * 255.48857 * 13 3 2 15 15 C 1.50699 * 112.90936 * 286.41420 * 14 13 3 16 16 O 1.20822 * 119.99887 * 156.44435 * 15 14 13 17 17 O 1.34228 * 119.99765 * 336.44993 * 15 14 13 18 18 C 1.45204 * 117.00027 * 185.05160 * 17 15 14 19 19 C 1.53782 * 113.61380 * 57.66889 * 14 13 3 20 20 C 1.53782 * 87.08200 * 89.11708 * 19 14 13 21 21 C 1.53785 * 113.61051 * 155.16792 * 14 13 3 22 22 H 1.08996 * 109.47326 * 185.09320 * 1 2 3 23 23 H 1.09007 * 109.46835 * 305.09372 * 1 2 3 24 24 H 1.08999 * 109.47405 * 65.08775 * 1 2 3 25 25 H 1.09007 * 109.46691 * 240.00841 * 2 1 3 26 26 H 1.08987 * 109.47615 * 120.00409 * 2 1 3 27 27 H 0.96998 * 120.00038 * 179.97438 * 8 7 5 28 28 H 1.00896 * 110.99569 * 19.43588 * 13 3 2 29 29 H 1.08997 * 109.46978 * 64.67287 * 18 17 15 30 30 H 1.08990 * 109.47417 * 184.67762 * 18 17 15 31 31 H 1.09002 * 109.46852 * 304.67796 * 18 17 15 32 32 H 1.08994 * 113.61846 * 334.56484 * 19 14 13 33 33 H 1.09002 * 113.68675 * 203.66995 * 19 14 13 34 34 H 1.08990 * 113.62091 * 139.97897 * 20 19 14 35 35 H 1.09002 * 113.61171 * 270.88278 * 20 19 14 36 36 H 1.08993 * 113.61417 * 156.33641 * 21 14 13 37 37 H 1.08994 * 113.61434 * 25.42814 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1252 1.4443 0.1025 5 6 1.4254 2.1926 1.1537 6 1 0.7551 3.0182 0.9652 7 6 1.7188 1.8247 2.4496 8 7 0.9579 2.2391 3.4391 9 14 3.1971 0.7379 2.8002 10 1 4.4074 1.5839 2.9569 11 1 2.9630 -0.0278 4.0509 12 1 3.3960 -0.2064 1.6715 13 7 1.6662 2.0942 -1.2624 14 6 2.8258 2.2140 -2.1564 15 6 3.7996 3.2760 -1.7149 16 8 4.9555 3.2175 -2.0618 17 8 3.3828 4.2868 -0.9363 18 6 4.3459 5.3329 -0.6423 19 6 3.4908 0.8673 -2.4866 20 6 2.5185 0.7677 -3.6739 21 6 2.4494 2.3037 -3.6447 22 1 -0.3634 -1.0236 0.0912 23 1 -0.3633 0.5909 0.8409 24 1 -0.3634 0.4329 -0.9320 25 1 1.8933 -0.5137 -0.8901 26 1 1.8934 -0.5138 0.8898 27 1 1.1640 1.9800 4.3508 28 1 0.9109 1.6008 -1.7141 29 1 4.6120 5.8511 -1.5636 30 1 3.9089 6.0422 0.0603 31 1 5.2401 4.8905 -0.2032 32 1 3.3309 0.1032 -1.7260 33 1 4.5356 0.9561 -2.7842 34 1 2.9747 0.3683 -4.5796 35 1 1.5742 0.2834 -3.4254 36 1 3.2093 2.7866 -4.2589 37 1 1.4487 2.6992 -3.8189 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255152106.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:56:15 Heat of formation + Delta-G solvation = -55.283812 kcal Electronic energy + Delta-G solvation = -18878.428091 eV Core-core repulsion = 16043.090885 eV Total energy + Delta-G solvation = -2835.337206 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 241.146 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.63224 -38.55912 -35.98738 -35.21656 -31.91577 -30.41694 -27.71979 -26.67553 -25.68974 -25.08192 -23.03229 -21.25983 -19.83397 -18.56981 -17.15540 -16.45917 -16.36061 -15.76885 -15.20123 -14.79742 -14.64041 -13.57854 -13.40105 -13.06640 -12.92821 -12.54886 -12.41181 -12.27072 -11.94644 -11.56921 -11.24055 -11.00966 -10.91038 -10.68957 -10.61979 -10.54997 -10.25604 -10.15857 -9.87724 -9.79817 -9.32359 -9.26205 -8.32032 -7.54827 -6.03573 -3.91969 2.61904 3.27971 3.30191 3.35957 3.40711 4.45463 4.53695 4.60558 4.79184 4.96001 5.14238 5.25640 5.48228 5.55976 5.62285 5.72913 5.82883 5.90700 5.92765 5.96214 6.03529 6.10455 6.19370 6.26211 6.39040 6.61043 6.80402 6.85186 6.90323 7.02892 7.39686 7.69511 7.83163 8.15650 8.34199 8.72171 9.15911 9.63620 11.09707 Molecular weight = 241.15amu Principal moments of inertia in cm(-1) A = 0.020551 B = 0.011237 C = 0.008828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1362.156776 B = 2491.147519 C = 3170.868185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.154 4.154 3 C 0.192 3.808 4 H 0.017 0.983 5 C -0.482 4.482 6 H 0.084 0.916 7 C 0.075 3.925 8 N -0.892 5.892 9 Si 0.848 3.152 10 H -0.281 1.281 11 H -0.288 1.288 12 H -0.258 1.258 13 N -0.635 5.635 14 C 0.098 3.902 15 C 0.491 3.509 16 O -0.530 6.530 17 O -0.315 6.315 18 C 0.032 3.968 19 C -0.164 4.164 20 C -0.137 4.137 21 C -0.121 4.121 22 H 0.028 0.972 23 H 0.084 0.916 24 H 0.038 0.962 25 H 0.031 0.969 26 H 0.061 0.939 27 H 0.261 0.739 28 H 0.339 0.661 29 H 0.053 0.947 30 H 0.099 0.901 31 H 0.057 0.943 32 H 0.083 0.917 33 H 0.092 0.908 34 H 0.073 0.927 35 H 0.084 0.916 36 H 0.088 0.912 37 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.971 -0.990 -11.791 12.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.193 4.193 3 C 0.084 3.916 4 H 0.035 0.965 5 C -0.520 4.520 6 H 0.102 0.898 7 C -0.126 4.126 8 N -0.531 5.531 9 Si 0.676 3.324 10 H -0.207 1.207 11 H -0.215 1.215 12 H -0.183 1.183 13 N -0.267 5.267 14 C 0.004 3.996 15 C 0.334 3.666 16 O -0.420 6.420 17 O -0.228 6.228 18 C -0.063 4.063 19 C -0.203 4.203 20 C -0.175 4.175 21 C -0.159 4.159 22 H 0.047 0.953 23 H 0.103 0.897 24 H 0.057 0.943 25 H 0.050 0.950 26 H 0.079 0.921 27 H 0.071 0.929 28 H 0.160 0.840 29 H 0.072 0.928 30 H 0.117 0.883 31 H 0.076 0.924 32 H 0.102 0.898 33 H 0.111 0.889 34 H 0.092 0.908 35 H 0.103 0.897 36 H 0.107 0.893 37 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 3.334 -0.328 -11.383 11.866 hybrid contribution 1.290 -1.397 0.232 1.916 sum 4.624 -1.725 -11.150 12.194 Atomic orbital electron populations 1.21637 0.95673 0.99418 1.02569 1.22618 0.97231 0.99768 0.99725 1.19597 0.94906 0.89247 0.87877 0.96480 1.20785 1.27518 1.16241 0.87502 0.89765 1.24801 0.95811 0.95661 0.96371 1.69959 1.36579 1.46770 0.99778 0.87483 0.85241 0.81600 0.78060 1.20738 1.21453 1.18257 1.60586 1.04704 1.57448 1.04002 1.21972 0.92217 0.91562 0.93876 1.23493 0.87458 0.81693 0.73950 1.90576 1.19595 1.76818 1.55039 1.86804 1.42697 1.31468 1.61858 1.23216 0.93003 0.89202 1.00844 1.23785 1.00313 0.97246 0.98988 1.22783 1.00038 0.95900 0.98750 1.23052 1.02928 0.97149 0.92797 0.95280 0.89719 0.94317 0.95004 0.92051 0.92871 0.83988 0.92834 0.88273 0.92431 0.89819 0.88908 0.90812 0.89722 0.89349 0.89690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.60 9.48 37.16 0.35 -2.25 16 2 C -0.15 -3.16 4.92 -26.73 -0.13 -3.29 16 3 C 0.19 4.34 1.17 -68.86 -0.08 4.26 16 4 H 0.02 0.43 5.63 -51.93 -0.29 0.13 16 5 C -0.48 -12.99 7.64 -34.44 -0.26 -13.26 16 6 H 0.08 2.53 8.06 -52.48 -0.42 2.11 16 7 C 0.07 2.10 5.35 -17.82 -0.10 2.00 16 8 N -0.89 -26.55 13.96 55.43 0.77 -25.77 16 9 Si 0.85 21.12 26.00 -169.99 -4.42 16.70 16 10 H -0.28 -7.14 7.11 56.52 0.40 -6.73 16 11 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 12 H -0.26 -6.03 5.35 56.52 0.30 -5.73 16 13 N -0.64 -12.43 6.03 -94.58 -0.57 -13.00 16 14 C 0.10 1.73 1.00 -131.94 -0.13 1.60 16 15 C 0.49 9.76 6.60 36.01 0.24 9.99 16 16 O -0.53 -10.92 15.73 -18.75 -0.29 -11.22 16 17 O -0.31 -6.42 10.27 -39.25 -0.40 -6.82 16 18 C 0.03 0.51 10.65 101.05 1.08 1.58 16 19 C -0.16 -2.60 6.76 -25.92 -0.18 -2.77 16 20 C -0.14 -1.71 7.77 -25.91 -0.20 -1.91 16 21 C -0.12 -1.65 7.25 -25.91 -0.19 -1.83 16 22 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 23 H 0.08 1.92 6.86 -51.92 -0.36 1.56 16 24 H 0.04 0.66 6.72 -51.93 -0.35 0.31 16 25 H 0.03 0.57 6.16 -51.93 -0.32 0.25 16 26 H 0.06 1.35 4.81 -51.94 -0.25 1.10 16 27 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 28 H 0.34 5.95 5.80 -39.29 -0.23 5.72 16 29 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.10 1.37 8.14 -51.93 -0.42 0.95 16 31 H 0.06 0.93 7.97 -51.93 -0.41 0.51 16 32 H 0.08 1.41 5.09 -51.93 -0.26 1.15 16 33 H 0.09 1.48 7.40 -51.93 -0.38 1.10 16 34 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 35 H 0.08 1.00 7.81 -51.93 -0.41 0.59 16 36 H 0.09 1.14 8.09 -51.93 -0.42 0.72 16 37 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 LS Contribution 289.56 15.07 4.36 4.36 Total: -1.00 -30.64 289.56 -5.61 -36.25 By element: Atomic # 1 Polarization: 10.84 SS G_CDS: -5.45 Total: 5.38 kcal Atomic # 6 Polarization: -6.28 SS G_CDS: 0.40 Total: -5.88 kcal Atomic # 7 Polarization: -38.98 SS G_CDS: 0.20 Total: -38.78 kcal Atomic # 8 Polarization: -17.34 SS G_CDS: -0.70 Total: -18.04 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -4.42 Total: 16.70 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -30.64 -5.61 -36.25 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255152106.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.036 kcal (2) G-P(sol) polarization free energy of solvation -30.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds