Wall clock time and date at job start Mon Mar 30 2020 18:01:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 109.47425 * 2 1 4 4 C 1.52996 * 109.46820 * 119.99787 * 2 1 3 5 5 C 1.50699 * 109.47101 * 294.99694 * 4 2 1 6 6 H 1.07993 * 120.00351 * 0.02562 * 5 4 2 7 7 C 1.37884 * 120.00109 * 179.97438 * 5 4 2 8 8 N 1.31511 * 119.99674 * 0.02562 * 7 5 4 9 9 Si 1.86797 * 119.99946 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47090 * 90.00613 * 9 7 5 11 11 H 1.48504 * 109.47114 * 209.99905 * 9 7 5 12 12 H 1.48492 * 109.47295 * 330.00251 * 9 7 5 13 13 C 1.53002 * 109.47334 * 239.99436 * 2 1 3 14 14 N 1.46903 * 109.46994 * 65.00413 * 13 2 1 15 15 C 1.46894 * 111.00270 * 180.02562 * 14 13 2 16 16 C 1.52997 * 109.47515 * 154.99879 * 15 14 13 17 17 C 1.53000 * 109.47060 * 180.02562 * 16 15 14 18 18 C 1.53002 * 109.47233 * 299.99657 * 17 16 15 19 19 O 1.42905 * 109.47086 * 300.00656 * 18 17 16 20 20 C 1.52997 * 109.46817 * 60.00194 * 18 17 16 21 21 C 1.52999 * 109.46927 * 275.00239 * 15 14 13 22 22 H 1.09001 * 109.47425 * 179.97438 * 1 2 3 23 23 H 1.09003 * 109.47512 * 300.00506 * 1 2 3 24 24 H 1.09001 * 109.46882 * 60.00196 * 1 2 3 25 25 H 1.08998 * 109.47338 * 55.00023 * 4 2 1 26 26 H 1.09002 * 109.47452 * 175.00098 * 4 2 1 27 27 H 0.97011 * 120.00070 * 179.97438 * 8 7 5 28 28 H 1.09000 * 109.47032 * 305.00671 * 13 2 1 29 29 H 1.08998 * 109.47074 * 185.00202 * 13 2 1 30 30 H 1.00901 * 111.00119 * 56.04572 * 14 13 2 31 31 H 1.09002 * 109.47104 * 34.99612 * 15 14 13 32 32 H 1.09002 * 109.47153 * 59.99762 * 16 15 14 33 33 H 1.09001 * 109.46832 * 299.99953 * 16 15 14 34 34 H 1.08992 * 109.47399 * 59.99823 * 17 16 15 35 35 H 1.09004 * 109.46724 * 180.02562 * 17 16 15 36 36 H 1.08993 * 109.47662 * 180.02562 * 18 17 16 37 37 H 0.96696 * 114.00040 * 179.97438 * 19 18 17 38 38 H 1.09002 * 109.47153 * 60.00231 * 20 18 17 39 39 H 1.09001 * 109.47289 * 180.02562 * 20 18 17 40 40 H 1.09000 * 109.47486 * 59.99528 * 21 15 14 41 41 H 1.09002 * 109.46716 * 299.99610 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 1.6412 0.0572 2.4765 6 1 1.0799 0.9743 2.3757 7 6 1.9922 -0.4021 3.7284 8 7 2.6752 -1.5191 3.8513 9 14 1.4974 0.5625 5.2496 10 1 0.1700 0.0940 5.7227 11 1 2.5063 0.3522 6.3189 12 1 1.4226 2.0077 4.9169 13 6 2.0400 -0.7214 -1.2492 14 7 1.6515 0.0373 -2.4457 15 6 2.1248 -0.6273 -3.6672 16 6 1.2361 -0.2229 -4.8450 17 6 1.7288 -0.9156 -6.1171 18 6 3.1726 -0.4957 -6.4000 19 8 3.2308 0.9213 -6.5760 20 6 4.0614 -0.9001 -5.2221 21 6 3.5685 -0.2069 -3.9497 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 1.6052 -1.7197 1.2952 26 1 3.1262 -0.7995 1.2057 27 1 2.9225 -1.8421 4.7320 28 1 1.6053 -1.7199 -1.2950 29 1 3.1263 -0.7996 -1.2054 30 1 1.9883 0.9871 -2.3967 31 1 2.0808 -1.7082 -3.5331 32 1 1.2801 0.8580 -4.9791 33 1 0.2075 -0.5224 -4.6437 34 1 1.6844 -1.9963 -5.9828 35 1 1.0958 -0.6271 -6.9563 36 1 3.5235 -0.9888 -7.3064 37 1 4.1183 1.2588 -6.7589 38 1 4.0170 -1.9809 -5.0878 39 1 5.0899 -0.6006 -5.4234 40 1 4.2017 -0.4950 -3.1105 41 1 3.6126 0.8739 -4.0837 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602623708.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:01:31 Heat of formation + Delta-G solvation = -88.749257 kcal Electronic energy + Delta-G solvation = -17743.704542 eV Core-core repulsion = 15042.749259 eV Total energy + Delta-G solvation = -2700.955282 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.46022 -36.86330 -35.08482 -33.00384 -31.65234 -30.86518 -28.31136 -26.64190 -24.85231 -22.80842 -22.51291 -21.43436 -20.07860 -18.89053 -17.02663 -16.30296 -16.07656 -15.05077 -14.82986 -14.38644 -14.30217 -14.00400 -13.54677 -13.13801 -12.54555 -12.53037 -12.30008 -12.11255 -12.00889 -11.47801 -11.39520 -11.25574 -11.12355 -10.81627 -10.75875 -10.46128 -10.29417 -10.25178 -10.18094 -9.90113 -9.64989 -9.08843 -8.90525 -8.30190 -7.97276 -5.95054 -3.95917 3.34963 3.41044 3.44627 4.03908 4.42352 4.52061 4.59930 4.66148 4.88575 5.07918 5.16529 5.32458 5.40776 5.41217 5.49231 5.62317 5.70222 5.78339 5.86673 5.88625 5.96175 6.09596 6.13026 6.21661 6.35382 6.41512 6.48311 6.63698 6.74789 7.07870 7.23539 7.25754 7.44693 7.49302 7.71740 7.77301 7.89644 8.05590 8.50048 9.10582 9.67306 11.16537 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.052187 B = 0.003951 C = 0.003857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 536.398694 B = 7085.068827 C = 7257.783474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.083 4.083 3 H 0.052 0.948 4 C 0.027 3.973 5 C -0.512 4.512 6 H 0.056 0.944 7 C 0.055 3.945 8 N -0.898 5.898 9 Si 0.890 3.110 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.274 1.274 13 C 0.064 3.936 14 N -0.683 5.683 15 C 0.089 3.911 16 C -0.102 4.102 17 C -0.112 4.112 18 C 0.105 3.895 19 O -0.562 6.562 20 C -0.148 4.148 21 C -0.145 4.145 22 H 0.039 0.961 23 H 0.052 0.948 24 H 0.042 0.958 25 H 0.016 0.984 26 H 0.012 0.988 27 H 0.259 0.741 28 H 0.064 0.936 29 H 0.022 0.978 30 H 0.337 0.663 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.066 0.934 34 H 0.073 0.927 35 H 0.067 0.933 36 H 0.050 0.950 37 H 0.373 0.627 38 H 0.070 0.930 39 H 0.061 0.939 40 H 0.060 0.940 41 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.766 1.242 -20.294 20.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.102 4.102 3 H 0.071 0.929 4 C -0.010 4.010 5 C -0.550 4.550 6 H 0.074 0.926 7 C -0.146 4.146 8 N -0.538 5.538 9 Si 0.718 3.282 10 H -0.207 1.207 11 H -0.213 1.213 12 H -0.199 1.199 13 C -0.064 4.064 14 N -0.312 5.312 15 C -0.022 4.022 16 C -0.140 4.140 17 C -0.150 4.150 18 C 0.046 3.954 19 O -0.367 6.367 20 C -0.186 4.186 21 C -0.184 4.184 22 H 0.058 0.942 23 H 0.071 0.929 24 H 0.061 0.939 25 H 0.034 0.966 26 H 0.030 0.970 27 H 0.069 0.931 28 H 0.082 0.918 29 H 0.041 0.959 30 H 0.155 0.845 31 H 0.089 0.911 32 H 0.087 0.913 33 H 0.085 0.915 34 H 0.092 0.908 35 H 0.086 0.914 36 H 0.068 0.932 37 H 0.220 0.780 38 H 0.089 0.911 39 H 0.079 0.921 40 H 0.079 0.921 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 0.552 0.784 -20.059 20.082 hybrid contribution 1.523 0.553 0.923 1.865 sum 2.075 1.336 -19.135 19.294 Atomic orbital electron populations 1.21582 0.95756 1.00507 1.00118 1.21198 0.95991 0.98886 0.94101 0.92914 1.19120 0.95849 0.95564 0.90502 1.21253 1.34467 1.08279 0.91008 0.92568 1.25023 0.95352 0.95112 0.99087 1.69971 1.39178 1.21305 1.23311 0.86629 0.78214 0.80446 0.82933 1.20717 1.21341 1.19906 1.22163 0.97061 0.97576 0.89608 1.60623 1.63582 1.05686 1.01303 1.21560 0.91495 0.98568 0.90567 1.21397 0.99099 1.01189 0.92315 1.21554 0.94352 1.00219 0.98872 1.21796 0.96459 0.81499 0.95654 1.86541 1.34136 1.21794 1.94268 1.22199 0.98938 1.01294 0.96201 1.22202 0.98115 1.01152 0.96922 0.94231 0.92857 0.93903 0.96607 0.97004 0.93141 0.91756 0.95925 0.84511 0.91097 0.91253 0.91514 0.90836 0.91414 0.93205 0.78039 0.91098 0.92062 0.92112 0.91288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.45 8.89 37.15 0.33 -2.12 16 2 C -0.08 -1.73 2.48 -90.62 -0.22 -1.96 16 3 H 0.05 1.12 8.14 -51.93 -0.42 0.69 16 4 C 0.03 0.71 4.45 -27.89 -0.12 0.59 16 5 C -0.51 -14.56 8.41 -34.44 -0.29 -14.85 16 6 H 0.06 1.56 7.05 -52.49 -0.37 1.19 16 7 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 8 N -0.90 -27.31 13.29 55.43 0.74 -26.57 16 9 Si 0.89 21.95 29.54 -169.99 -5.02 16.93 16 10 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 11 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 12 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 13 C 0.06 1.14 4.87 -3.82 -0.02 1.13 16 14 N -0.68 -10.26 5.70 -106.73 -0.61 -10.87 16 15 C 0.09 1.12 2.47 -67.72 -0.17 0.95 16 16 C -0.10 -1.19 5.38 -26.73 -0.14 -1.33 16 17 C -0.11 -1.07 5.66 -26.73 -0.15 -1.23 16 18 C 0.10 0.93 3.77 -26.73 -0.10 0.83 16 19 O -0.56 -5.36 11.97 -35.23 -0.42 -5.78 16 20 C -0.15 -1.35 5.64 -26.70 -0.15 -1.50 16 21 C -0.14 -1.65 5.03 -26.70 -0.13 -1.79 16 22 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 23 H 0.05 1.13 6.95 -51.93 -0.36 0.77 16 24 H 0.04 0.77 7.75 -51.93 -0.40 0.37 16 25 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 26 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 28 H 0.06 1.17 8.05 -51.93 -0.42 0.75 16 29 H 0.02 0.41 7.44 -51.93 -0.39 0.02 16 30 H 0.34 4.96 8.47 -39.29 -0.33 4.62 16 31 H 0.07 0.94 7.80 -51.93 -0.40 0.54 16 32 H 0.07 0.89 7.68 -51.93 -0.40 0.49 16 33 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 37 H 0.37 2.15 9.08 45.56 0.41 2.57 16 38 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 40 H 0.06 0.76 7.45 -51.93 -0.39 0.38 16 41 H 0.07 0.81 7.67 -51.93 -0.40 0.41 16 LS Contribution 319.47 15.07 4.81 4.81 Total: -1.00 -30.75 319.47 -8.58 -39.34 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: -6.81 Total: 1.93 kcal Atomic # 6 Polarization: -18.52 SS G_CDS: -1.27 Total: -19.79 kcal Atomic # 7 Polarization: -37.56 SS G_CDS: 0.13 Total: -37.44 kcal Atomic # 8 Polarization: -5.36 SS G_CDS: -0.42 Total: -5.78 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -30.75 -8.58 -39.34 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602623708.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.414 kcal (2) G-P(sol) polarization free energy of solvation -30.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds