Wall clock time and date at job start Mon Mar 30 2020 17:58:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08990 * 109.47355 * 2 1 4 4 C 1.53000 * 109.46776 * 240.00010 * 2 1 3 5 5 C 1.52997 * 109.47060 * 174.99999 * 4 2 1 6 6 C 1.50697 * 109.47466 * 180.02562 * 5 4 2 7 7 H 1.08001 * 119.99890 * 0.02562 * 6 5 4 8 8 C 1.37876 * 120.00428 * 179.97438 * 6 5 4 9 9 N 1.31519 * 119.99563 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 120.00432 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.46616 * 0.02562 * 10 8 6 12 12 H 1.48501 * 109.47104 * 119.99966 * 10 8 6 13 13 H 1.48489 * 109.47200 * 240.00246 * 10 8 6 14 14 N 1.46901 * 109.46937 * 120.00309 * 2 1 3 15 15 C 1.46900 * 110.99981 * 274.99476 * 14 2 1 16 16 H 1.09001 * 109.54019 * 34.83124 * 15 14 2 17 17 C 1.53170 * 109.54687 * 274.55659 * 15 14 2 18 18 C 1.53092 * 109.16530 * 183.15209 * 17 15 14 19 19 O 1.42900 * 109.41513 * 57.61105 * 18 17 15 20 20 C 1.42905 * 114.09860 * 298.84377 * 19 18 17 21 21 C 1.53095 * 109.41443 * 61.15459 * 20 19 18 22 22 H 1.09005 * 109.57334 * 62.32958 * 21 20 19 23 23 C 1.53003 * 109.52274 * 182.48585 * 21 20 19 24 24 H 1.09000 * 109.47312 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.46964 * 299.99825 * 1 2 3 26 26 H 1.08994 * 109.47359 * 59.99600 * 1 2 3 27 27 H 1.09002 * 109.47398 * 295.00168 * 4 2 1 28 28 H 1.09001 * 109.47194 * 55.00349 * 4 2 1 29 29 H 1.09002 * 109.47153 * 300.00319 * 5 4 2 30 30 H 1.08998 * 109.47533 * 59.99948 * 5 4 2 31 31 H 0.97002 * 119.99731 * 180.02562 * 9 8 6 32 32 H 1.00907 * 110.99901 * 151.04662 * 14 2 1 33 33 H 1.09002 * 109.52661 * 303.06196 * 17 15 14 34 34 H 1.09006 * 109.52223 * 63.25004 * 17 15 14 35 35 H 1.09004 * 109.47805 * 297.62691 * 18 17 15 36 36 H 1.09001 * 109.48963 * 177.60249 * 18 17 15 37 37 H 1.08998 * 109.47870 * 301.17650 * 20 19 18 38 38 H 1.08999 * 109.48014 * 181.13778 * 20 19 18 39 39 H 1.08994 * 109.47240 * 179.68836 * 23 21 20 40 40 H 1.08994 * 109.47055 * 299.69155 * 23 21 20 41 41 H 1.09000 * 109.46784 * 59.68637 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 3.5647 -0.6133 -1.3138 6 6 4.0670 -1.3232 -2.5445 7 1 3.3685 -1.8030 -3.2141 8 6 5.4182 -1.3593 -2.8165 9 7 6.2688 -0.7746 -2.0014 10 14 6.0409 -2.2398 -4.3417 11 1 4.8909 -2.8113 -5.0874 12 1 6.7631 -1.2754 -5.2099 13 1 6.9635 -3.3320 -3.9408 14 7 2.0196 -0.6926 1.1994 15 6 2.0825 0.2225 2.3469 16 1 1.2599 0.9354 2.2902 17 6 3.4169 0.9744 2.3302 18 6 3.5066 1.8665 3.5711 19 8 3.3705 1.0627 4.7448 20 6 2.1225 0.3728 4.8380 21 6 1.9771 -0.5792 3.6479 22 1 2.7691 -1.3274 3.6799 23 6 0.6151 -1.2734 3.7118 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 1.7515 -1.7715 -1.2057 28 1 1.6053 -0.2617 -2.1370 29 1 3.8531 0.4369 -1.3574 30 1 3.9994 -1.0728 -0.4261 31 1 7.2194 -0.7996 -2.1929 32 1 2.9173 -1.1206 1.0287 33 1 4.2387 0.2584 2.3361 34 1 3.4763 1.5911 1.4333 35 1 2.7085 2.6083 3.5440 36 1 4.4723 2.3719 3.5866 37 1 1.3062 1.0951 4.8274 38 1 2.0911 -0.1980 5.7661 39 1 0.5102 -1.9467 2.8612 40 1 0.5410 -1.8434 4.6378 41 1 -0.1762 -0.5243 3.6820 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172484708.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:58:03 Heat of formation + Delta-G solvation = -78.325443 kcal Electronic energy + Delta-G solvation = -18317.224671 eV Core-core repulsion = 15616.721399 eV Total energy + Delta-G solvation = -2700.503272 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 241.178 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.64440 -37.00915 -34.29363 -32.90055 -31.95986 -29.77862 -28.72445 -26.48755 -25.19842 -23.59018 -22.18352 -21.36158 -20.06761 -19.39360 -16.43832 -16.15540 -16.02115 -15.39036 -14.58960 -14.53773 -14.32895 -14.14204 -13.74027 -12.89230 -12.59837 -12.47869 -12.31333 -11.98440 -11.90846 -11.69737 -11.42612 -11.29996 -11.06075 -10.95119 -10.82520 -10.72495 -10.44867 -10.32590 -10.08063 -9.78454 -9.45013 -9.26953 -9.02330 -8.37104 -7.91563 -6.02086 -4.04021 3.29982 3.37717 3.41910 3.92806 4.44861 4.47444 4.84053 4.91140 5.03440 5.22869 5.29631 5.34201 5.47037 5.51145 5.54471 5.66409 5.67964 5.74016 5.77471 5.87665 5.96081 6.04412 6.15627 6.19800 6.32063 6.35855 6.41476 6.47856 6.51312 6.59005 6.90495 7.07570 7.23893 7.53366 7.61171 7.78937 7.91148 7.98504 8.41268 9.02889 9.60402 11.09075 Molecular weight = 241.18amu Principal moments of inertia in cm(-1) A = 0.027366 B = 0.005653 C = 0.005062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.915293 B = 4952.063175 C = 5529.683752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.083 3.917 3 H 0.036 0.964 4 C -0.115 4.115 5 C 0.022 3.978 6 C -0.519 4.519 7 H 0.055 0.945 8 C 0.057 3.943 9 N -0.895 5.895 10 Si 0.891 3.109 11 H -0.273 1.273 12 H -0.285 1.285 13 H -0.284 1.284 14 N -0.678 5.678 15 C 0.094 3.906 16 H 0.071 0.929 17 C -0.187 4.187 18 C 0.067 3.933 19 O -0.386 6.386 20 C 0.066 3.934 21 C -0.115 4.115 22 H 0.078 0.922 23 C -0.134 4.134 24 H 0.057 0.943 25 H 0.042 0.958 26 H 0.049 0.951 27 H 0.056 0.944 28 H 0.053 0.947 29 H 0.011 0.989 30 H 0.015 0.985 31 H 0.259 0.741 32 H 0.353 0.647 33 H 0.077 0.923 34 H 0.075 0.925 35 H 0.046 0.954 36 H 0.091 0.909 37 H 0.046 0.954 38 H 0.090 0.910 39 H 0.074 0.926 40 H 0.045 0.955 41 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.759 3.456 11.469 15.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.027 4.027 3 H 0.054 0.946 4 C -0.152 4.152 5 C -0.015 4.015 6 C -0.557 4.557 7 H 0.073 0.927 8 C -0.144 4.144 9 N -0.535 5.535 10 Si 0.719 3.281 11 H -0.197 1.197 12 H -0.211 1.211 13 H -0.210 1.210 14 N -0.311 5.311 15 C -0.017 4.017 16 H 0.089 0.911 17 C -0.226 4.226 18 C -0.011 4.011 19 O -0.304 6.304 20 C -0.011 4.011 21 C -0.134 4.134 22 H 0.097 0.903 23 C -0.191 4.191 24 H 0.076 0.924 25 H 0.061 0.939 26 H 0.069 0.931 27 H 0.075 0.925 28 H 0.071 0.929 29 H 0.029 0.971 30 H 0.033 0.967 31 H 0.069 0.931 32 H 0.175 0.825 33 H 0.096 0.904 34 H 0.094 0.906 35 H 0.064 0.936 36 H 0.110 0.890 37 H 0.064 0.936 38 H 0.109 0.891 39 H 0.093 0.907 40 H 0.064 0.936 41 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -10.056 3.205 11.771 15.810 hybrid contribution 1.120 0.161 -1.364 1.772 sum -8.936 3.366 10.407 14.124 Atomic orbital electron populations 1.21799 0.95876 1.01644 1.00010 1.21584 0.94330 0.96127 0.90642 0.94558 1.21826 0.99681 0.99425 0.94315 1.19116 0.88757 0.96767 0.96901 1.21276 0.91948 1.34202 1.08269 0.92667 1.25022 0.97097 0.95612 0.96700 1.69969 1.02314 1.44205 1.36983 0.86552 0.78857 0.79489 0.83214 1.19745 1.21076 1.21006 1.60681 1.34670 1.31701 1.04074 1.21592 0.95562 0.93199 0.91337 0.91075 1.22962 0.99986 1.00877 0.98816 1.22519 1.01668 0.92289 0.84611 1.87907 1.37061 1.63249 1.42200 1.22677 0.85930 0.94133 0.98408 1.21756 0.99398 0.98100 0.94179 0.90328 1.21607 0.95277 1.00401 1.01821 0.92402 0.93928 0.93150 0.92508 0.92855 0.97061 0.96651 0.93100 0.82497 0.90420 0.90605 0.93597 0.89043 0.93580 0.89144 0.90734 0.93591 0.93521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.94 9.40 37.16 0.35 -1.59 16 2 C 0.08 1.40 2.46 -67.71 -0.17 1.23 16 3 H 0.04 0.64 7.18 -51.93 -0.37 0.27 16 4 C -0.11 -2.33 4.74 -26.73 -0.13 -2.45 16 5 C 0.02 0.55 4.80 -27.89 -0.13 0.41 16 6 C -0.52 -14.59 9.11 -34.44 -0.31 -14.90 16 7 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 8 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 9 N -0.90 -26.67 13.29 55.43 0.74 -25.94 16 10 Si 0.89 21.68 29.54 -169.99 -5.02 16.66 16 11 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 12 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 13 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 14 N -0.68 -10.95 5.45 -99.55 -0.54 -11.49 16 15 C 0.09 1.32 1.77 -67.53 -0.12 1.20 16 16 H 0.07 0.98 7.12 -51.93 -0.37 0.61 16 17 C -0.19 -2.76 5.38 -26.60 -0.14 -2.90 16 18 C 0.07 0.86 6.84 37.20 0.25 1.11 16 19 O -0.39 -5.36 10.77 -35.23 -0.38 -5.73 16 20 C 0.07 0.77 6.13 37.21 0.23 0.99 16 21 C -0.11 -1.45 2.61 -90.48 -0.24 -1.69 16 22 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 23 C -0.13 -1.52 9.08 37.16 0.34 -1.18 16 24 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 25 H 0.04 0.56 7.43 -51.93 -0.39 0.17 16 26 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 28 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 29 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.02 0.40 6.43 -51.93 -0.33 0.07 16 31 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 32 H 0.35 6.51 6.18 -39.29 -0.24 6.27 16 33 H 0.08 1.29 8.08 -51.93 -0.42 0.87 16 34 H 0.08 1.19 7.51 -51.93 -0.39 0.80 16 35 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 37 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 38 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 39 H 0.07 0.96 7.71 -51.93 -0.40 0.56 16 40 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 LS Contribution 319.55 15.07 4.82 4.82 Total: -1.00 -29.09 319.55 -8.09 -37.18 By element: Atomic # 1 Polarization: 10.30 SS G_CDS: -7.53 Total: 2.77 kcal Atomic # 6 Polarization: -18.08 SS G_CDS: -0.17 Total: -18.25 kcal Atomic # 7 Polarization: -37.62 SS G_CDS: 0.19 Total: -37.43 kcal Atomic # 8 Polarization: -5.36 SS G_CDS: -0.38 Total: -5.73 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -29.09 -8.09 -37.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172484708.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.146 kcal (2) G-P(sol) polarization free energy of solvation -29.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds