Wall clock time and date at job start Mon Mar 30 2020 17:57:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30778 * 1 3 3 Si 1.86796 * 120.00081 * 2 1 4 4 H 1.48496 * 109.47219 * 274.98171 * 3 2 1 5 5 H 1.48504 * 109.47409 * 34.98544 * 3 2 1 6 6 H 1.48503 * 109.47118 * 154.98189 * 3 2 1 7 7 C 1.40050 * 119.99612 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99733 * 186.17854 * 7 2 1 9 9 C 1.40861 * 119.99936 * 6.17395 * 7 2 1 10 10 N 1.33716 * 119.90495 * 353.18735 * 9 7 2 11 11 C 1.31305 * 121.59905 * 179.97438 * 10 9 7 12 12 C 1.39143 * 121.22996 * 0.02562 * 11 10 9 13 13 Br 1.89100 * 120.16455 * 180.02562 * 12 11 10 14 14 C 1.38581 * 119.67476 * 0.02562 * 12 11 10 15 15 C 1.39228 * 118.50996 * 359.97438 * 14 12 11 16 16 N 1.38557 * 120.60728 * 180.02562 * 15 14 12 17 17 H 0.97010 * 119.99723 * 0.02562 * 1 2 3 18 18 H 1.08005 * 119.38256 * 180.27508 * 11 10 9 19 19 H 1.08001 * 120.74782 * 179.97438 * 14 12 11 20 20 H 0.97005 * 119.99453 * 359.97438 * 16 15 14 21 21 H 0.96999 * 120.00134 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3078 0.0000 0.0000 3 14 2.2418 1.6177 0.0000 4 1 2.3840 2.1072 -1.3947 5 1 1.4959 2.6200 0.8028 6 1 3.5880 1.4120 0.5921 7 6 2.0079 -1.2129 0.0005 8 1 3.0833 -1.2156 0.1012 9 6 1.3097 -2.4293 -0.1301 10 7 -0.0274 -2.4351 -0.1174 11 6 -0.7118 -3.5493 -0.2371 12 6 -0.0724 -4.7765 -0.3824 13 35 -1.0878 -6.3626 -0.5532 14 6 1.3123 -4.8308 -0.4014 15 6 2.0257 -3.6421 -0.2735 16 7 3.4112 -3.6459 -0.2872 17 1 -0.4850 0.8402 -0.0004 18 1 -1.7911 -3.5120 -0.2266 19 1 1.8264 -5.7740 -0.5128 20 1 3.8929 -4.4820 -0.3863 21 1 3.8994 -2.8126 -0.1971 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095642103.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:57:04 Heat of formation + Delta-G solvation = 29.182485 kcal Electronic energy + Delta-G solvation = -10136.418176 eV Core-core repulsion = 8058.099988 eV Total energy + Delta-G solvation = -2078.318188 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 241.975 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.39807 -33.87332 -33.72963 -31.16614 -28.71895 -28.15092 -25.22913 -21.87569 -20.76659 -17.59828 -16.50151 -15.49645 -14.92778 -14.38026 -13.54162 -12.81275 -12.72848 -11.99795 -11.48908 -11.34187 -11.11070 -10.58443 -10.38596 -10.05659 -9.89421 -9.35269 -9.21567 -7.83285 -7.72350 -6.75601 -6.52891 -4.45036 2.54894 2.96632 3.02165 3.02980 3.04918 3.07579 3.85380 4.62439 5.03231 5.74602 6.08837 6.15920 6.54938 6.82169 6.95195 7.06156 7.35619 7.71400 8.02480 8.26190 8.57552 8.78487 8.89269 9.99006 10.20175 Molecular weight = 241.97amu Principal moments of inertia in cm(-1) A = 0.058163 B = 0.007531 C = 0.006688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 481.287583 B = 3717.050498 C = 4185.412254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.709 5.709 2 C 0.067 3.933 3 Si 0.909 3.091 4 H -0.269 1.269 5 H -0.275 1.275 6 H -0.262 1.262 7 C -0.424 4.424 8 H 0.083 0.917 9 C 0.231 3.769 10 N -0.466 5.466 11 C 0.118 3.882 12 C -0.232 4.232 13 Br -0.118 7.118 14 C -0.132 4.132 15 C 0.079 3.921 16 N -0.877 5.877 17 H 0.275 0.725 18 H 0.123 0.877 19 H 0.102 0.898 20 H 0.380 0.620 21 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.379 -5.363 -0.685 5.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.330 5.330 2 C -0.159 4.159 3 Si 0.733 3.267 4 H -0.194 1.194 5 H -0.200 1.200 6 H -0.185 1.185 7 C -0.456 4.456 8 H 0.101 0.899 9 C 0.101 3.899 10 N -0.179 5.179 11 C -0.046 4.046 12 C -0.316 4.316 13 Br -0.035 7.035 14 C -0.163 4.163 15 C -0.027 4.027 16 N -0.420 5.420 17 H 0.087 0.913 18 H 0.141 0.859 19 H 0.120 0.880 20 H 0.205 0.795 21 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 0.291 -4.967 -0.638 5.016 hybrid contribution 1.388 0.125 -0.106 1.398 sum 1.678 -4.842 -0.744 5.178 Atomic orbital electron populations 1.70132 1.07187 1.28064 1.27595 1.26034 0.94946 1.01057 0.93880 0.86281 0.80417 0.80847 0.79125 1.19432 1.19991 1.18541 1.19328 0.94413 0.89607 1.42220 0.89866 1.18496 0.88494 0.90489 0.92441 1.68855 1.06326 1.24351 1.18393 1.22412 0.98892 0.86888 0.96440 1.21781 0.93518 0.89973 1.26374 1.96310 1.73188 1.36104 1.97947 1.20080 0.92033 0.95652 1.08494 1.18764 0.84485 0.94286 1.05194 1.41765 1.03314 1.10125 1.86768 0.91346 0.85903 0.87955 0.79450 0.77753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -18.33 11.49 55.55 0.64 -17.69 14 2 C 0.07 1.63 5.49 -17.32 -0.10 1.54 14 3 Si 0.91 17.74 29.56 -169.99 -5.03 12.71 14 4 H -0.27 -5.23 7.11 56.52 0.40 -4.83 14 5 H -0.27 -5.30 7.11 56.52 0.40 -4.90 14 6 H -0.26 -4.95 7.11 56.52 0.40 -4.55 14 7 C -0.42 -10.64 8.86 -37.91 -0.34 -10.97 14 8 H 0.08 1.89 6.15 -52.49 -0.32 1.56 14 9 C 0.23 6.05 6.56 -84.79 -0.56 5.50 14 10 N -0.47 -12.66 7.88 -10.93 -0.09 -12.75 14 11 C 0.12 2.92 10.93 -17.44 -0.19 2.73 14 12 C -0.23 -5.29 6.26 -39.12 -0.24 -5.54 14 13 Br -0.12 -2.24 33.72 -68.01 -2.29 -4.54 14 14 C -0.13 -2.96 9.78 -39.09 -0.38 -3.35 14 15 C 0.08 1.83 6.81 -83.19 -0.57 1.27 14 16 N -0.88 -16.47 8.97 32.78 0.29 -16.17 14 17 H 0.28 6.44 8.30 -40.82 -0.34 6.10 14 18 H 0.12 2.81 8.06 -52.48 -0.42 2.39 14 19 H 0.10 2.07 8.06 -52.49 -0.42 1.65 14 20 H 0.38 5.96 8.85 -40.82 -0.36 5.60 14 21 H 0.39 7.03 6.84 -40.82 -0.28 6.75 14 LS Contribution 213.88 15.07 3.22 3.22 Total: -1.00 -27.70 213.88 -6.56 -34.26 By element: Atomic # 1 Polarization: 10.72 SS G_CDS: -0.94 Total: 9.78 kcal Atomic # 6 Polarization: -6.46 SS G_CDS: -2.37 Total: -8.83 kcal Atomic # 7 Polarization: -47.45 SS G_CDS: 0.85 Total: -46.61 kcal Atomic # 14 Polarization: 17.74 SS G_CDS: -5.03 Total: 12.71 kcal Atomic # 35 Polarization: -2.24 SS G_CDS: -2.29 Total: -4.54 kcal Total LS contribution 3.22 Total: 3.22 kcal Total: -27.70 -6.56 -34.26 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095642103.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.444 kcal (2) G-P(sol) polarization free energy of solvation -27.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.262 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds