Wall clock time and date at job start Mon Mar 30 2020 17:57:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30778 * 1 3 3 Si 1.86796 * 120.00081 * 2 1 4 4 H 1.48496 * 109.47219 * 274.98171 * 3 2 1 5 5 H 1.48504 * 109.47409 * 34.98544 * 3 2 1 6 6 H 1.48503 * 109.47118 * 154.98189 * 3 2 1 7 7 C 1.40050 * 119.99612 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99733 * 186.17854 * 7 2 1 9 9 C 1.40861 * 119.99936 * 6.17395 * 7 2 1 10 10 N 1.33716 * 119.90495 * 353.18735 * 9 7 2 11 11 C 1.31305 * 121.59905 * 179.97438 * 10 9 7 12 12 C 1.39143 * 121.22996 * 0.02562 * 11 10 9 13 13 Br 1.89100 * 120.16455 * 180.02562 * 12 11 10 14 14 C 1.38581 * 119.67476 * 0.02562 * 12 11 10 15 15 C 1.39228 * 118.50996 * 359.97438 * 14 12 11 16 16 N 1.38557 * 120.60728 * 180.02562 * 15 14 12 17 17 H 0.97010 * 119.99723 * 0.02562 * 1 2 3 18 18 H 1.08005 * 119.38256 * 180.27508 * 11 10 9 19 19 H 1.08001 * 120.74782 * 179.97438 * 14 12 11 20 20 H 0.97005 * 119.99453 * 359.97438 * 16 15 14 21 21 H 0.96999 * 120.00134 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3078 0.0000 0.0000 3 14 2.2418 1.6177 0.0000 4 1 2.3840 2.1072 -1.3947 5 1 1.4959 2.6200 0.8028 6 1 3.5880 1.4120 0.5921 7 6 2.0079 -1.2129 0.0005 8 1 3.0833 -1.2156 0.1012 9 6 1.3097 -2.4293 -0.1301 10 7 -0.0274 -2.4351 -0.1174 11 6 -0.7118 -3.5493 -0.2371 12 6 -0.0724 -4.7765 -0.3824 13 35 -1.0878 -6.3626 -0.5532 14 6 1.3123 -4.8308 -0.4014 15 6 2.0257 -3.6421 -0.2735 16 7 3.4112 -3.6459 -0.2872 17 1 -0.4850 0.8402 -0.0004 18 1 -1.7911 -3.5120 -0.2266 19 1 1.8264 -5.7740 -0.5128 20 1 3.8929 -4.4820 -0.3863 21 1 3.8994 -2.8126 -0.1971 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095642103.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:57:03 Heat of formation + Delta-G solvation = 11.041971 kcal Electronic energy + Delta-G solvation = -10137.204808 eV Core-core repulsion = 8058.099988 eV Total energy + Delta-G solvation = -2079.104820 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 241.975 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.21174 -35.63448 -35.47967 -32.96044 -30.46953 -29.90977 -27.05790 -23.70862 -22.56300 -19.42803 -18.22170 -17.19570 -16.65959 -16.06332 -15.28985 -14.57062 -14.49390 -13.73589 -13.25486 -12.93531 -12.77522 -12.25635 -12.04820 -11.75672 -11.63514 -10.98316 -10.97668 -9.60683 -9.57071 -8.50814 -8.31759 -6.29202 0.74210 1.20255 1.20700 1.44233 1.53212 1.58041 2.23358 2.82021 3.46868 3.86588 4.28932 4.38958 4.74673 5.09044 5.15682 5.26744 5.54823 5.92325 6.19548 6.52790 6.78004 7.07980 7.37284 8.14744 8.44673 Molecular weight = 241.97amu Principal moments of inertia in cm(-1) A = 0.058163 B = 0.007531 C = 0.006688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 481.287583 B = 3717.050498 C = 4185.412254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.754 5.754 2 C 0.021 3.979 3 Si 0.989 3.011 4 H -0.267 1.267 5 H -0.273 1.273 6 H -0.249 1.249 7 C -0.450 4.450 8 H 0.101 0.899 9 C 0.194 3.806 10 N -0.501 5.501 11 C 0.091 3.909 12 C -0.230 4.230 13 Br -0.079 7.079 14 C -0.143 4.143 15 C 0.080 3.920 16 N -0.860 5.860 17 H 0.279 0.721 18 H 0.128 0.872 19 H 0.127 0.873 20 H 0.397 0.603 21 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.691 -5.731 -0.787 6.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.376 5.376 2 C -0.201 4.201 3 Si 0.809 3.191 4 H -0.192 1.192 5 H -0.198 1.198 6 H -0.172 1.172 7 C -0.483 4.483 8 H 0.119 0.881 9 C 0.063 3.937 10 N -0.215 5.215 11 C -0.073 4.073 12 C -0.315 4.315 13 Br 0.003 6.997 14 C -0.174 4.174 15 C -0.028 4.028 16 N -0.404 5.404 17 H 0.090 0.910 18 H 0.146 0.854 19 H 0.145 0.855 20 H 0.226 0.774 21 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 1.624 -5.386 -0.743 5.674 hybrid contribution 0.943 0.063 -0.087 0.949 sum 2.567 -5.323 -0.830 5.968 Atomic orbital electron populations 1.70251 1.09066 1.29244 1.29067 1.27007 0.95669 1.04649 0.92805 0.85090 0.79258 0.75706 0.79049 1.19185 1.19811 1.17164 1.19765 0.95404 0.90050 1.43038 0.88137 1.18959 0.88750 0.92177 0.93787 1.68753 1.07384 1.25936 1.19443 1.22576 0.99259 0.87456 0.97964 1.21987 0.94337 0.91107 1.24076 1.96318 1.72343 1.33206 1.97794 1.20369 0.92056 0.96421 1.08506 1.18847 0.86199 0.93751 1.03981 1.41656 1.01760 1.11466 1.85561 0.90996 0.85431 0.85486 0.77379 0.77105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -39.89 11.49 21.84 0.25 -39.64 14 2 C 0.02 1.01 5.49 85.29 0.47 1.48 14 3 Si 0.99 36.08 29.56 68.60 2.03 38.11 14 4 H -0.27 -9.55 7.11 99.48 0.71 -8.84 14 5 H -0.27 -9.77 7.11 99.48 0.71 -9.07 14 6 H -0.25 -8.43 7.11 99.48 0.71 -7.73 14 7 C -0.45 -22.62 8.86 23.35 0.21 -22.41 14 8 H 0.10 4.46 6.15 -2.91 -0.02 4.44 14 9 C 0.19 10.25 6.56 40.32 0.26 10.51 14 10 N -0.50 -27.85 7.88 -188.50 -1.49 -29.34 14 11 C 0.09 4.53 10.93 84.99 0.93 5.46 14 12 C -0.23 -10.31 6.26 22.57 0.14 -10.17 14 13 Br -0.08 -2.87 33.72 -20.37 -0.69 -3.56 14 14 C -0.14 -6.19 9.78 22.59 0.22 -5.97 14 15 C 0.08 3.65 6.81 39.14 0.27 3.91 14 16 N -0.86 -30.56 8.97 -50.19 -0.45 -31.01 14 17 H 0.28 13.40 8.30 -92.70 -0.77 12.63 14 18 H 0.13 5.98 8.06 -2.91 -0.02 5.96 14 19 H 0.13 4.78 8.06 -2.91 -0.02 4.76 14 20 H 0.40 11.37 8.85 -92.70 -0.82 10.55 14 21 H 0.40 13.45 6.84 -92.71 -0.63 12.82 14 Total: -1.00 -59.08 213.88 1.99 -57.09 By element: Atomic # 1 Polarization: 25.69 SS G_CDS: -0.17 Total: 25.52 kcal Atomic # 6 Polarization: -19.68 SS G_CDS: 2.50 Total: -17.18 kcal Atomic # 7 Polarization: -98.30 SS G_CDS: -1.69 Total: -99.98 kcal Atomic # 14 Polarization: 36.08 SS G_CDS: 2.03 Total: 38.11 kcal Atomic # 35 Polarization: -2.87 SS G_CDS: -0.69 Total: -3.56 kcal Total: -59.08 1.99 -57.09 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095642103.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.137 kcal (2) G-P(sol) polarization free energy of solvation -59.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.095 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds