Wall clock time and date at job start Mon Mar 30 2020 18:01:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86795 * 119.99887 * 2 1 4 4 H 1.48504 * 109.47412 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47196 * 299.99905 * 3 2 1 6 6 H 1.48503 * 109.47156 * 59.99528 * 3 2 1 7 7 C 1.37878 * 119.99995 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99712 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00093 * 0.02562 * 7 2 1 10 10 C 1.50704 * 109.46843 * 180.02562 * 9 7 2 11 11 C 1.38460 * 119.87748 * 269.97917 * 10 9 7 12 12 C 1.38381 * 120.32704 * 180.02562 * 11 10 9 13 13 F 1.35102 * 119.96044 * 179.97438 * 12 11 10 14 14 C 1.38532 * 120.07505 * 359.97438 * 12 11 10 15 15 F 1.35103 * 120.12375 * 179.97438 * 14 12 11 16 16 C 1.39823 * 119.75308 * 0.02562 * 14 12 11 17 17 C 1.47578 * 120.16045 * 180.02562 * 16 14 12 18 18 O 1.21493 * 119.99895 * 359.97438 * 17 16 14 19 19 O 1.34720 * 120.00023 * 179.97438 * 17 16 14 20 20 C 1.37825 * 119.87539 * 90.00253 * 10 9 7 21 21 H 0.96997 * 120.00143 * 0.02562 * 1 2 3 22 22 H 1.09000 * 109.47193 * 60.00259 * 9 7 2 23 23 H 1.09002 * 109.47024 * 300.00017 * 9 7 2 24 24 H 1.08004 * 119.83570 * 0.02562 * 11 10 9 25 25 H 0.96700 * 117.00469 * 179.97438 * 19 17 16 26 26 H 1.08003 * 120.03986 * 359.69730 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3465 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2305 -3.6446 0.0018 11 6 2.6793 -4.1696 -1.1982 12 6 3.5782 -5.2217 -1.2079 13 9 4.0109 -5.7286 -2.3831 14 6 4.0349 -5.7556 -0.0140 15 9 4.9121 -6.7831 -0.0223 16 6 3.5837 -5.2279 1.1997 17 6 4.0648 -5.7895 2.4769 18 8 4.8543 -6.7129 2.4754 19 8 3.6284 -5.2782 3.6444 20 6 2.6757 -4.1659 1.1975 21 1 -0.4850 0.8400 -0.0004 22 1 0.6248 -2.5571 -0.8897 23 1 0.6241 -2.5567 0.8903 24 1 2.3261 -3.7560 -2.1313 25 1 3.9713 -5.6792 4.4548 26 1 2.3268 -3.7508 2.1316 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260162016.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 18:01:10 Heat of formation + Delta-G solvation = -167.106221 kcal Electronic energy + Delta-G solvation = -16617.512723 eV Core-core repulsion = 13296.854167 eV Total energy + Delta-G solvation = -3320.658556 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 242.054 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -49.23141 -48.30343 -40.20339 -38.45460 -36.04370 -33.58953 -31.53650 -30.78808 -27.20669 -24.87906 -23.49678 -22.20522 -20.44358 -18.17210 -17.67228 -16.99082 -16.57893 -16.50490 -16.17965 -15.77228 -15.40955 -14.71877 -14.66457 -14.25543 -13.59492 -13.34639 -12.81224 -12.67315 -11.99546 -11.63009 -11.53202 -11.41384 -11.35001 -10.83758 -10.75122 -10.50088 -9.88064 -9.64930 -8.88879 -8.59316 -8.19402 -6.21682 -4.27318 0.63061 1.23252 2.56517 2.89821 3.20719 3.29441 3.33367 3.72082 3.99006 4.31864 4.56064 4.75112 5.07521 5.12234 5.16369 5.49591 5.83910 5.98017 6.21002 6.37902 6.46959 6.55187 6.96823 7.28989 7.42877 7.73014 7.88403 8.06162 8.77535 9.38527 10.88035 Molecular weight = 242.05amu Principal moments of inertia in cm(-1) A = 0.025127 B = 0.006883 C = 0.005918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.064810 B = 4067.184263 C = 4730.071724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.063 3.937 3 Si 0.897 3.103 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.522 4.522 8 H 0.060 0.940 9 C 0.048 3.952 10 C -0.029 4.029 11 C -0.091 4.091 12 C 0.054 3.946 13 F -0.131 7.131 14 C 0.100 3.900 15 F -0.116 7.116 16 C -0.145 4.145 17 C 0.533 3.467 18 O -0.509 6.509 19 O -0.504 6.504 20 C -0.044 4.044 21 H 0.264 0.736 22 H 0.038 0.962 23 H 0.040 0.960 24 H 0.151 0.849 25 H 0.414 0.586 26 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.262 -8.247 2.679 9.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.140 4.140 3 Si 0.725 3.275 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.560 4.560 8 H 0.079 0.921 9 C 0.011 3.989 10 C -0.029 4.029 11 C -0.110 4.110 12 C 0.034 3.966 13 F -0.109 7.109 14 C 0.079 3.921 15 F -0.094 7.094 16 C -0.147 4.147 17 C 0.377 3.623 18 O -0.398 6.398 19 O -0.316 6.316 20 C -0.062 4.062 21 H 0.074 0.926 22 H 0.056 0.944 23 H 0.058 0.942 24 H 0.169 0.831 25 H 0.272 0.728 26 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 4.225 -8.267 2.275 9.559 hybrid contribution 0.953 0.400 0.274 1.070 sum 5.179 -7.867 2.549 9.757 Atomic orbital electron populations 1.69945 1.06065 1.27127 1.49631 1.24988 0.94898 0.99394 0.94722 0.86446 0.80136 0.83184 0.77783 1.19574 1.20826 1.20793 1.21041 0.93177 0.89512 1.52240 0.92131 1.18460 0.92162 0.88737 0.99527 1.20704 0.96467 0.95509 0.90263 1.21406 0.95037 0.93270 1.01246 1.17463 1.01098 0.98318 0.79746 1.91509 1.88578 1.86406 1.44443 1.17408 0.93422 0.89172 0.92112 1.91561 1.65570 1.55184 1.97112 1.18849 1.04984 1.02229 0.88634 1.20488 0.77833 0.79780 0.84169 1.90930 1.32781 1.27985 1.88096 1.84589 1.68418 1.62027 1.16557 1.21470 0.92710 0.91657 1.00344 0.92605 0.94376 0.94212 0.83085 0.72792 0.82897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.33 13.29 55.43 0.74 -23.59 15 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 15 3 Si 0.90 20.15 29.54 -169.99 -5.02 15.13 15 4 H -0.27 -6.03 7.11 56.52 0.40 -5.63 15 5 H -0.28 -6.32 7.11 56.52 0.40 -5.92 15 6 H -0.28 -6.30 7.11 56.52 0.40 -5.90 15 7 C -0.52 -13.16 9.09 -34.44 -0.31 -13.47 15 8 H 0.06 1.52 7.74 -52.49 -0.41 1.11 15 9 C 0.05 1.07 5.10 -29.03 -0.15 0.92 15 10 C -0.03 -0.54 5.06 -104.69 -0.53 -1.07 15 11 C -0.09 -1.54 9.66 -39.45 -0.38 -1.92 15 12 C 0.05 0.91 7.30 -39.42 -0.29 0.62 15 13 F -0.13 -2.17 17.18 2.25 0.04 -2.13 15 14 C 0.10 1.72 7.29 -38.88 -0.28 1.44 15 15 F -0.12 -2.12 15.46 2.25 0.03 -2.08 15 16 C -0.14 -2.39 5.88 -104.94 -0.62 -3.01 15 17 C 0.53 8.22 8.27 34.54 0.29 8.51 15 18 O -0.51 -9.01 16.13 -19.26 -0.31 -9.32 15 19 O -0.50 -5.96 12.68 -40.54 -0.51 -6.47 15 20 C -0.04 -0.73 9.26 -39.17 -0.36 -1.09 15 21 H 0.26 6.84 8.31 -40.82 -0.34 6.51 15 22 H 0.04 0.89 8.08 -51.93 -0.42 0.47 15 23 H 0.04 0.92 8.08 -51.93 -0.42 0.50 15 24 H 0.15 2.38 8.06 -52.48 -0.42 1.96 15 25 H 0.41 2.72 9.11 45.56 0.42 3.13 15 26 H 0.15 2.42 7.61 -52.48 -0.40 2.02 15 LS Contribution 254.95 15.07 3.84 3.84 Total: -1.00 -29.20 254.95 -4.72 -33.92 By element: Atomic # 1 Polarization: -0.96 SS G_CDS: -0.79 Total: -1.75 kcal Atomic # 6 Polarization: -4.82 SS G_CDS: -2.73 Total: -7.55 kcal Atomic # 7 Polarization: -24.33 SS G_CDS: 0.74 Total: -23.59 kcal Atomic # 8 Polarization: -14.97 SS G_CDS: -0.82 Total: -15.79 kcal Atomic # 9 Polarization: -4.29 SS G_CDS: 0.07 Total: -4.21 kcal Atomic # 14 Polarization: 20.15 SS G_CDS: -5.02 Total: 15.13 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -29.20 -4.72 -33.92 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260162016.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -133.187 kcal (2) G-P(sol) polarization free energy of solvation -29.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds