Wall clock time and date at job start Mon Mar 30 2020 17:57:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30682 * 1 3 3 Si 1.86799 * 119.99892 * 2 1 4 4 H 1.48506 * 109.46889 * 240.00010 * 3 2 1 5 5 H 1.48493 * 109.47454 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46771 * 120.00553 * 3 2 1 7 7 C 1.40046 * 119.99549 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99453 * 180.02562 * 7 2 1 9 9 C 1.46370 * 120.00156 * 359.97438 * 7 2 1 10 10 O 1.21685 * 120.00347 * 359.97438 * 9 7 2 11 11 N 1.34777 * 120.00042 * 180.02562 * 9 7 2 12 12 O 1.41595 * 120.00363 * 179.97438 * 11 9 7 13 13 C 1.42901 * 114.00182 * 179.97438 * 12 11 9 14 14 C 1.53001 * 109.47108 * 180.02562 * 13 12 11 15 15 N 1.46498 * 109.47601 * 64.99876 * 14 13 12 16 16 C 1.46768 * 124.34879 * 89.99607 * 15 14 13 17 17 C 1.54480 * 105.55098 * 197.08340 * 16 15 14 18 18 C 1.54631 * 101.76472 * 334.54015 * 17 16 15 19 19 C 1.34621 * 124.47196 * 270.02849 * 15 14 13 20 20 O 1.21286 * 124.90539 * 359.55259 * 19 15 14 21 21 H 0.97007 * 119.99537 * 359.97438 * 1 2 3 22 22 H 0.97002 * 120.00089 * 0.02562 * 11 9 7 23 23 H 1.08998 * 109.47077 * 60.00706 * 13 12 11 24 24 H 1.08996 * 109.47326 * 300.00097 * 13 12 11 25 25 H 1.09002 * 109.47341 * 304.99997 * 14 13 12 26 26 H 1.08998 * 109.47560 * 184.99877 * 14 13 12 27 27 H 1.09002 * 110.24468 * 78.03845 * 16 15 14 28 28 H 1.09002 * 110.24463 * 316.12602 * 16 15 14 29 29 H 1.08995 * 110.97082 * 92.66028 * 17 16 15 30 30 H 1.09001 * 110.96924 * 216.42557 * 17 16 15 31 31 H 1.09000 * 110.48694 * 143.47575 * 18 17 16 32 32 H 1.08994 * 110.49106 * 266.12244 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 3.0945 1.6964 -1.2126 5 1 1.2759 2.7464 0.0006 6 1 3.0946 1.6963 1.2125 7 6 2.0069 -1.2129 -0.0005 8 1 3.0870 -1.2129 -0.0001 9 6 1.2750 -2.4804 -0.0005 10 8 0.0582 -2.4805 0.0004 11 7 1.9489 -3.6477 -0.0005 12 8 1.2409 -4.8739 0.0000 13 6 2.0808 -6.0301 -0.0006 14 6 1.2135 -7.2905 -0.0006 15 7 0.4552 -7.3617 -1.2521 16 6 0.9312 -8.0242 -2.4722 17 6 0.0412 -7.4815 -3.6122 18 6 -1.2420 -7.0818 -2.8475 19 6 -0.7674 -6.8282 -1.4336 20 8 -1.3966 -6.2306 -0.5863 21 1 -0.4850 0.8401 0.0004 22 1 2.9189 -3.6478 -0.0002 23 1 2.7106 -6.0221 0.8889 24 1 2.7094 -6.0220 -0.8911 25 1 0.5223 -7.2560 0.8415 26 1 1.8509 -8.1702 0.0884 27 1 0.8150 -9.1045 -2.3846 28 1 1.9754 -7.7713 -2.6559 29 1 0.4997 -6.6133 -4.0854 30 1 -0.1688 -8.2589 -4.3469 31 1 -1.6734 -6.1759 -3.2733 32 1 -1.9666 -7.8958 -2.8663 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331280276.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:57:51 Heat of formation + Delta-G solvation = -62.395618 kcal Electronic energy + Delta-G solvation = -17518.697650 eV Core-core repulsion = 14481.793047 eV Total energy + Delta-G solvation = -3036.904603 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 242.110 amu Computer time = 2.00 seconds Orbital eigenvalues (eV) -40.07159 -37.32661 -36.16644 -35.66003 -33.09211 -32.39857 -30.37367 -28.24629 -27.44397 -25.86690 -22.99946 -21.75454 -20.16615 -19.19776 -17.51602 -16.74227 -16.50995 -16.24542 -15.32225 -15.03859 -14.64243 -14.05781 -13.61207 -13.48912 -13.39126 -12.87657 -12.49711 -12.37502 -12.32529 -11.92227 -11.52947 -11.36380 -11.14414 -11.00723 -10.97452 -10.48570 -10.27142 -10.03977 -9.41357 -8.84033 -8.56174 -7.57811 -7.26508 -6.19285 -4.67619 2.93089 3.11798 3.16859 3.19823 3.22830 3.42742 4.17961 4.45960 4.48590 4.62607 4.77976 5.05291 5.15594 5.20156 5.33470 5.37151 5.52305 5.60051 5.66898 5.84962 5.85770 5.88709 5.97932 6.04114 6.71903 7.34386 7.41284 7.81186 8.23706 8.42379 8.54210 8.98327 9.48713 10.63023 10.82332 Molecular weight = 242.11amu Principal moments of inertia in cm(-1) A = 0.036957 B = 0.005448 C = 0.005220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 757.448581 B = 5138.068519 C = 5362.904081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.766 5.766 2 C 0.087 3.913 3 Si 0.917 3.083 4 H -0.267 1.267 5 H -0.279 1.279 6 H -0.267 1.267 7 C -0.538 4.538 8 H 0.071 0.929 9 C 0.565 3.435 10 O -0.552 6.552 11 N -0.631 5.631 12 O -0.151 6.151 13 C 0.015 3.985 14 C 0.137 3.863 15 N -0.626 5.626 16 C 0.105 3.895 17 C -0.131 4.131 18 C -0.155 4.155 19 C 0.515 3.485 20 O -0.500 6.500 21 H 0.271 0.729 22 H 0.382 0.618 23 H 0.058 0.942 24 H 0.048 0.952 25 H 0.090 0.910 26 H 0.092 0.908 27 H 0.067 0.933 28 H 0.073 0.927 29 H 0.082 0.918 30 H 0.087 0.913 31 H 0.102 0.898 32 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.923 -15.729 -6.243 17.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.394 5.394 2 C -0.134 4.134 3 Si 0.741 3.259 4 H -0.192 1.192 5 H -0.204 1.204 6 H -0.192 1.192 7 C -0.576 4.576 8 H 0.089 0.911 9 C 0.368 3.632 10 O -0.431 6.431 11 N -0.341 5.341 12 O -0.152 6.152 13 C -0.065 4.065 14 C 0.013 3.987 15 N -0.362 5.362 16 C -0.018 4.018 17 C -0.169 4.169 18 C -0.195 4.195 19 C 0.302 3.698 20 O -0.372 6.372 21 H 0.082 0.918 22 H 0.218 0.782 23 H 0.076 0.924 24 H 0.066 0.934 25 H 0.109 0.891 26 H 0.111 0.889 27 H 0.085 0.915 28 H 0.092 0.908 29 H 0.101 0.899 30 H 0.105 0.895 31 H 0.120 0.880 32 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 4.246 -15.309 -5.703 16.880 hybrid contribution 1.384 0.477 -0.043 1.465 sum 5.631 -14.833 -5.745 16.874 Atomic orbital electron populations 1.70039 1.07068 1.27662 1.34618 1.25702 0.94729 1.00223 0.92703 0.86288 0.79629 0.80521 0.79435 1.19218 1.20431 1.19191 1.20549 0.93447 0.87660 1.55894 0.91076 1.18590 0.87905 0.79859 0.76800 1.90660 1.13859 1.84802 1.53758 1.48639 1.05741 0.94421 1.85250 1.90682 1.21706 1.05714 1.97143 1.23187 0.94981 0.88040 1.00245 1.21299 0.95228 0.95500 0.86629 1.48212 1.18661 1.56961 1.12392 1.21991 0.99025 0.96602 0.84205 1.22567 0.95227 1.02142 0.96992 1.22310 0.98719 1.04410 0.94050 1.20880 0.81160 0.77715 0.90074 1.90828 1.59004 1.38547 1.48823 0.91773 0.78188 0.92406 0.93360 0.89146 0.88937 0.91469 0.90824 0.89924 0.89480 0.88001 0.88273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.83 11.83 55.55 0.66 -23.17 16 2 C 0.09 2.47 5.50 -17.36 -0.10 2.38 16 3 Si 0.92 20.34 29.56 -169.99 -5.02 15.31 16 4 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 5 H -0.28 -6.05 7.11 56.52 0.40 -5.64 16 6 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 7 C -0.54 -15.64 9.54 -35.63 -0.34 -15.98 16 8 H 0.07 1.83 7.85 -52.48 -0.41 1.42 16 9 C 0.56 17.53 7.89 -12.99 -0.10 17.42 16 10 O -0.55 -19.98 15.43 -12.93 -0.20 -20.18 16 11 N -0.63 -16.01 6.39 30.19 0.19 -15.82 16 12 O -0.15 -3.67 10.70 -29.60 -0.32 -3.99 16 13 C 0.02 0.25 6.57 37.16 0.24 0.49 16 14 C 0.14 1.87 6.34 -4.04 -0.03 1.85 16 15 N -0.63 -8.98 2.90 -172.35 -0.50 -9.48 16 16 C 0.11 1.00 7.34 -3.12 -0.02 0.97 16 17 C -0.13 -1.21 7.18 -25.10 -0.18 -1.39 16 18 C -0.15 -1.94 6.86 -26.74 -0.18 -2.13 16 19 C 0.51 9.25 7.74 -10.77 -0.08 9.17 16 20 O -0.50 -12.07 17.52 5.55 0.10 -11.97 16 21 H 0.27 7.61 8.29 -40.82 -0.34 7.27 16 22 H 0.38 8.00 8.52 -40.82 -0.35 7.65 16 23 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 24 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 25 H 0.09 1.41 7.93 -51.93 -0.41 1.00 16 26 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.10 1.37 8.14 -51.93 -0.42 0.95 16 32 H 0.10 1.00 8.14 -51.93 -0.42 0.57 16 LS Contribution 286.48 15.07 4.32 4.32 Total: -1.00 -42.06 286.48 -5.68 -47.74 By element: Atomic # 1 Polarization: 8.56 SS G_CDS: -4.11 Total: 4.45 kcal Atomic # 6 Polarization: 13.57 SS G_CDS: -0.79 Total: 12.78 kcal Atomic # 7 Polarization: -48.81 SS G_CDS: 0.35 Total: -48.46 kcal Atomic # 8 Polarization: -35.72 SS G_CDS: -0.42 Total: -36.14 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.31 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -42.06 -5.68 -47.74 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331280276.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.659 kcal (2) G-P(sol) polarization free energy of solvation -42.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.00 seconds