Wall clock time and date at job start Mon Mar 30 2020 17:58:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86795 * 120.00139 * 2 1 4 4 H 1.48508 * 109.47021 * 180.27706 * 3 2 1 5 5 H 1.48500 * 109.47081 * 300.27550 * 3 2 1 6 6 H 1.48501 * 109.47213 * 60.27922 * 3 2 1 7 7 C 1.37885 * 119.99792 * 180.27823 * 2 1 3 8 8 H 1.07999 * 119.99964 * 179.72485 * 7 2 1 9 9 C 1.50700 * 120.00047 * 359.72305 * 7 2 1 10 10 C 1.52992 * 109.47257 * 180.02562 * 9 7 2 11 11 C 1.50700 * 109.47257 * 179.97438 * 10 9 7 12 12 O 1.21279 * 120.00113 * 359.97438 * 11 10 9 13 13 N 1.34774 * 119.99956 * 179.97438 * 11 10 9 14 14 C 1.46499 * 119.99966 * 179.97438 * 13 11 10 15 15 H 1.08994 * 110.43730 * 34.29806 * 14 13 11 16 16 C 1.54632 * 110.48947 * 156.84202 * 14 13 11 17 17 C 1.54681 * 101.67038 * 143.39449 * 16 14 13 18 18 N 1.46761 * 105.53700 * 334.73934 * 17 16 14 19 19 O 1.41601 * 124.35100 * 196.90295 * 18 17 16 20 20 C 1.34423 * 111.29943 * 16.92450 * 18 17 16 21 21 O 1.21277 * 124.94148 * 179.62797 * 20 18 17 22 22 H 0.97000 * 119.99468 * 359.71811 * 1 2 3 23 23 H 1.09004 * 109.46932 * 300.00367 * 9 7 2 24 24 H 1.08997 * 109.47392 * 59.99705 * 9 7 2 25 25 H 1.09004 * 109.47330 * 299.99977 * 10 9 7 26 26 H 1.09005 * 109.47124 * 59.99773 * 10 9 7 27 27 H 0.96999 * 120.00050 * 0.02562 * 13 11 10 28 28 H 1.09000 * 110.96654 * 261.59945 * 16 14 13 29 29 H 1.08997 * 110.96750 * 25.35251 * 16 14 13 30 30 H 1.09004 * 110.29419 * 215.67755 * 17 16 14 31 31 H 1.09001 * 110.13652 * 93.72264 * 17 16 14 32 32 H 0.96700 * 113.99926 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3462 -0.0068 5 1 1.8854 2.3993 -1.2091 6 1 1.8956 2.3934 1.2159 7 6 2.0046 -1.1941 -0.0058 8 1 3.0845 -1.1941 -0.0103 9 6 1.2510 -2.4992 -0.0058 10 6 2.2452 -3.6621 -0.0122 11 6 1.4916 -4.9672 -0.0116 12 8 0.2789 -4.9672 -0.0061 13 7 2.1655 -6.1344 -0.0171 14 6 1.4330 -7.4031 -0.0160 15 1 0.5092 -7.3097 -0.5868 16 6 2.3129 -8.5366 -0.5921 17 6 1.8950 -9.7364 0.2903 18 7 1.4101 -9.1510 1.5457 19 8 1.2496 -9.8718 2.7539 20 6 1.1375 -7.8426 1.4011 21 8 0.7167 -7.1196 2.2792 22 1 -0.4849 0.8401 0.0041 23 1 0.6280 -2.5591 0.8866 24 1 0.6206 -2.5548 -0.8933 25 1 2.8685 -3.6025 -0.9044 26 1 2.8753 -3.6063 0.8756 27 1 3.1355 -6.1344 -0.0211 28 1 2.0763 -8.7195 -1.6403 29 1 3.3717 -8.3107 -0.4665 30 1 2.7523 -10.3819 0.4814 31 1 1.0985 -10.3000 -0.1955 32 1 0.9195 -9.3379 3.4895 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001333509694.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:58:15 Heat of formation + Delta-G solvation = -67.741849 kcal Electronic energy + Delta-G solvation = -17166.181469 eV Core-core repulsion = 14129.045036 eV Total energy + Delta-G solvation = -3037.136433 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 242.110 amu Computer time = 4.74 seconds Orbital eigenvalues (eV) -40.78547 -38.79044 -36.72029 -36.03769 -33.60254 -33.42582 -31.01344 -29.43121 -27.52228 -25.42576 -22.44673 -21.99211 -20.75270 -19.74699 -18.03311 -17.34992 -16.72176 -16.65049 -15.58290 -14.93043 -14.86479 -14.45399 -14.35929 -14.12150 -13.90582 -13.20192 -13.15601 -12.71264 -12.34176 -12.24560 -12.10053 -11.50972 -11.13788 -10.93040 -10.56039 -10.43483 -9.93693 -9.65566 -9.20384 -9.02563 -8.90328 -8.87188 -8.29699 -5.93486 -3.97843 1.51334 2.27855 3.20082 3.34570 3.35575 3.41948 3.45190 3.99814 4.10880 4.30987 4.48905 4.51175 4.87727 5.08864 5.20678 5.32674 5.41551 5.42975 5.70093 6.21349 6.24361 6.25609 6.52022 6.89566 7.01311 7.73820 7.77967 7.89483 7.98495 8.10178 8.40665 8.72989 9.10829 9.65564 11.17562 Molecular weight = 242.11amu Principal moments of inertia in cm(-1) A = 0.054423 B = 0.004312 C = 0.004204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 514.361491 B = 6492.319368 C = 6659.471540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.526 4.526 8 H 0.056 0.944 9 C 0.036 3.964 10 C -0.127 4.127 11 C 0.514 3.486 12 O -0.519 6.519 13 N -0.727 5.727 14 C 0.126 3.874 15 H 0.131 0.869 16 C -0.134 4.134 17 C 0.131 3.869 18 N -0.488 5.488 19 O -0.323 6.323 20 C 0.485 3.515 21 O -0.503 6.503 22 H 0.260 0.740 23 H 0.024 0.976 24 H 0.024 0.976 25 H 0.081 0.919 26 H 0.081 0.919 27 H 0.402 0.598 28 H 0.110 0.890 29 H 0.095 0.905 30 H 0.089 0.911 31 H 0.082 0.918 32 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.603 -20.936 -1.915 22.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.565 4.565 8 H 0.075 0.925 9 C -0.002 4.002 10 C -0.167 4.167 11 C 0.303 3.697 12 O -0.392 6.392 13 N -0.384 5.384 14 C 0.016 3.984 15 H 0.148 0.852 16 C -0.173 4.173 17 C 0.011 3.989 18 N -0.269 5.269 19 O -0.216 6.216 20 C 0.271 3.729 21 O -0.375 6.375 22 H 0.070 0.930 23 H 0.043 0.957 24 H 0.043 0.957 25 H 0.100 0.900 26 H 0.099 0.901 27 H 0.237 0.763 28 H 0.128 0.872 29 H 0.114 0.886 30 H 0.108 0.892 31 H 0.101 0.899 32 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges 6.512 -20.918 -1.734 21.977 hybrid contribution 0.648 1.021 0.743 1.419 sum 7.160 -19.897 -0.991 21.169 Atomic orbital electron populations 1.70015 1.06064 1.26452 1.50259 1.25030 0.94816 0.99234 0.95323 0.86533 0.79986 0.83851 0.77566 1.19754 1.21030 1.21032 1.21253 0.92956 0.90976 1.51285 0.92531 1.18921 0.93205 0.89332 0.98744 1.21866 1.00754 0.91484 1.02584 1.21685 0.88800 0.85435 0.73828 1.90689 1.14419 1.87231 1.46887 1.46069 1.09814 1.04000 1.78469 1.21290 0.99249 0.85379 0.92462 0.85158 1.23061 1.01115 0.92368 1.00743 1.22078 1.00404 0.96440 0.80008 1.49728 1.67449 1.07161 1.02515 1.88923 1.91139 1.28216 1.13305 1.22126 0.77986 0.80637 0.92188 1.90824 1.44224 1.56344 1.46122 0.93013 0.95711 0.95744 0.90030 0.90113 0.76255 0.87182 0.88600 0.89223 0.89944 0.75381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.77 13.29 55.43 0.74 -27.04 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 3 Si 0.89 21.84 29.54 -169.99 -5.02 16.82 16 4 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 7 C -0.53 -15.09 9.11 -34.44 -0.31 -15.40 16 8 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 9 C 0.04 0.97 4.26 -27.89 -0.12 0.85 16 10 C -0.13 -2.59 5.64 -27.89 -0.16 -2.75 16 11 C 0.51 9.99 7.83 -10.99 -0.09 9.90 16 12 O -0.52 -12.54 15.66 5.56 0.09 -12.45 16 13 N -0.73 -9.82 5.14 -53.82 -0.28 -10.09 16 14 C 0.13 1.48 3.25 -67.94 -0.22 1.26 16 15 H 0.13 1.66 7.61 -51.93 -0.40 1.26 16 16 C -0.13 -0.77 6.89 -24.99 -0.17 -0.94 16 17 C 0.13 0.85 7.66 -3.02 -0.02 0.82 16 18 N -0.49 -5.45 4.30 -59.09 -0.25 -5.71 16 19 O -0.32 -3.53 15.21 -19.41 -0.30 -3.82 16 20 C 0.49 7.04 7.84 -10.86 -0.09 6.95 16 21 O -0.50 -9.87 17.57 -2.38 -0.04 -9.91 16 22 H 0.26 7.60 8.31 -40.82 -0.34 7.27 16 23 H 0.02 0.75 8.10 -51.93 -0.42 0.33 16 24 H 0.02 0.72 8.10 -51.93 -0.42 0.30 16 25 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 26 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 27 H 0.40 3.97 8.40 -40.82 -0.34 3.62 16 28 H 0.11 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.10 0.41 7.81 -51.93 -0.41 0.00 16 30 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.40 3.59 8.69 45.56 0.40 3.99 16 LS Contribution 285.43 15.07 4.30 4.30 Total: -1.00 -39.36 285.43 -5.28 -44.64 By element: Atomic # 1 Polarization: 4.22 SS G_CDS: -3.24 Total: 0.98 kcal Atomic # 6 Polarization: 3.56 SS G_CDS: -1.27 Total: 2.29 kcal Atomic # 7 Polarization: -43.04 SS G_CDS: 0.21 Total: -42.84 kcal Atomic # 8 Polarization: -25.94 SS G_CDS: -0.25 Total: -26.19 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -39.36 -5.28 -44.64 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333509694.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.099 kcal (2) G-P(sol) polarization free energy of solvation -39.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.74 seconds