Wall clock time and date at job start Mon Mar 30 2020 17:58:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31406 * 1 3 3 Si 1.86805 * 120.00267 * 2 1 4 4 H 1.48495 * 109.46862 * 270.00067 * 3 2 1 5 5 H 1.48504 * 109.47034 * 30.00011 * 3 2 1 6 6 H 1.48495 * 109.47110 * 150.00016 * 3 2 1 7 7 C 1.38952 * 119.99894 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99722 * 0.02562 * 7 2 1 9 9 N 1.37100 * 120.00168 * 179.97438 * 7 2 1 10 10 C 1.34773 * 119.99924 * 180.02562 * 9 7 2 11 11 O 1.21286 * 120.00193 * 0.02562 * 10 9 7 12 12 C 1.50700 * 119.99751 * 180.02562 * 10 9 7 13 13 N 1.46505 * 109.46955 * 180.02562 * 12 10 9 14 14 C 1.34783 * 119.99820 * 179.97438 * 13 12 10 15 15 O 1.21282 * 119.99991 * 0.02562 * 14 13 12 16 16 C 1.50693 * 119.99907 * 179.97438 * 14 13 12 17 17 H 1.09005 * 109.47158 * 305.00200 * 16 14 13 18 18 O 1.42897 * 109.47472 * 185.00322 * 16 14 13 19 19 C 1.53003 * 109.47251 * 64.99863 * 16 14 13 20 20 C 1.53000 * 117.49792 * 179.97438 * 19 16 14 21 21 C 1.53002 * 60.02940 * 107.48056 * 20 19 16 22 22 H 0.97001 * 120.00145 * 0.02562 * 1 2 3 23 23 H 0.97003 * 119.99424 * 0.02562 * 9 7 2 24 24 H 1.08993 * 109.47513 * 59.99830 * 12 10 9 25 25 H 1.09004 * 109.46978 * 299.99506 * 12 10 9 26 26 H 0.96997 * 120.00028 * 359.97438 * 13 12 10 27 27 H 0.96703 * 113.99927 * 300.00421 * 18 16 14 28 28 H 1.08999 * 115.54778 * 34.33310 * 19 16 14 29 29 H 1.09002 * 117.49833 * 214.98161 * 20 19 16 30 30 H 1.09002 * 117.49953 * 359.97438 * 20 19 16 31 31 H 1.09000 * 117.49996 * 107.50493 * 21 20 19 32 32 H 1.08999 * 117.49664 * 252.51862 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4956 2.0463 -1.4000 5 1 1.4456 2.6527 0.7001 6 1 3.5457 1.4401 0.7000 7 6 2.0088 -1.2034 0.0005 8 1 1.4687 -2.1387 0.0005 9 7 3.3798 -1.2034 0.0000 10 6 4.0536 -2.3706 0.0000 11 8 3.4471 -3.4210 0.0000 12 6 5.5606 -2.3707 0.0000 13 7 6.0489 -3.7520 -0.0006 14 6 7.3740 -3.9983 -0.0012 15 8 8.1621 -3.0764 -0.0008 16 6 7.8763 -5.4190 -0.0013 17 1 7.4420 -5.9580 0.8408 18 8 9.3004 -5.4208 0.1155 19 6 7.4708 -6.1033 -1.3083 20 6 7.8911 -7.5616 -1.5022 21 6 6.4255 -7.2186 -1.2274 22 1 -0.4850 0.8400 -0.0004 23 1 3.8648 -0.3633 -0.0004 24 1 5.9240 -1.8569 0.8899 25 1 5.9239 -1.8569 -0.8901 26 1 5.4185 -4.4892 -0.0006 27 1 9.7545 -4.9576 -0.6018 28 1 7.4569 -5.4623 -2.1898 29 1 8.1528 -7.8801 -2.5113 30 1 8.4568 -8.0334 -0.6988 31 1 5.7231 -7.3114 -2.0557 32 1 6.0271 -7.4645 -0.2431 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001334408254.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:58:21 Heat of formation + Delta-G solvation = -124.955099 kcal Electronic energy + Delta-G solvation = -17054.207639 eV Core-core repulsion = 14014.590254 eV Total energy + Delta-G solvation = -3039.617385 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 242.110 amu Computer time = 5.31 seconds Orbital eigenvalues (eV) -41.36479 -40.25064 -38.53646 -36.58026 -36.18438 -35.27989 -33.84771 -30.51255 -28.21096 -26.02306 -23.21261 -22.54673 -21.58563 -21.49716 -20.59978 -19.18294 -17.91210 -17.39073 -17.12774 -16.79712 -16.65939 -16.06865 -15.82560 -15.10700 -14.92182 -14.81266 -14.38185 -14.13001 -13.96520 -13.65067 -12.98509 -12.89284 -12.45783 -12.34599 -12.01516 -11.87747 -11.59192 -11.52818 -11.18998 -10.69598 -10.59051 -10.35250 -10.23530 -8.46510 -6.08593 1.30221 1.32965 1.41864 1.43028 1.77892 1.92154 2.19533 2.69851 2.84288 3.09732 3.37885 3.55745 3.74473 3.94900 3.98462 4.09304 4.24642 4.36400 4.38165 4.57140 4.83281 5.02159 5.14310 5.19420 5.28540 5.47120 5.87065 6.33712 6.47352 6.60970 6.77131 7.04058 7.28072 7.76365 8.69884 Molecular weight = 242.11amu Principal moments of inertia in cm(-1) A = 0.041272 B = 0.004828 C = 0.004416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.262075 B = 5797.763984 C = 6339.566811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.007 4.007 3 Si 0.958 3.042 4 H -0.256 1.256 5 H -0.273 1.273 6 H -0.234 1.234 7 C -0.332 4.332 8 H 0.064 0.936 9 N -0.578 5.578 10 C 0.445 3.555 11 O -0.612 6.612 12 C 0.114 3.886 13 N -0.701 5.701 14 C 0.489 3.511 15 O -0.574 6.574 16 C 0.136 3.864 17 H 0.136 0.864 18 O -0.543 6.543 19 C -0.205 4.205 20 C -0.145 4.145 21 C -0.171 4.171 22 H 0.281 0.719 23 H 0.392 0.608 24 H 0.103 0.897 25 H 0.105 0.895 26 H 0.415 0.585 27 H 0.392 0.608 28 H 0.105 0.895 29 H 0.108 0.892 30 H 0.105 0.895 31 H 0.101 0.899 32 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.746 -8.102 -2.498 18.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.207 4.207 3 Si 0.778 3.222 4 H -0.181 1.181 5 H -0.198 1.198 6 H -0.157 1.157 7 C -0.461 4.461 8 H 0.082 0.918 9 N -0.218 5.218 10 C 0.232 3.768 11 O -0.498 6.498 12 C -0.013 4.013 13 N -0.357 5.357 14 C 0.276 3.724 15 O -0.454 6.454 16 C 0.074 3.926 17 H 0.154 0.846 18 O -0.349 6.349 19 C -0.224 4.224 20 C -0.182 4.182 21 C -0.208 4.208 22 H 0.091 0.909 23 H 0.227 0.773 24 H 0.121 0.879 25 H 0.123 0.877 26 H 0.254 0.746 27 H 0.242 0.758 28 H 0.124 0.876 29 H 0.127 0.873 30 H 0.123 0.877 31 H 0.120 0.880 32 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 16.564 -8.370 -1.959 18.662 hybrid contribution -0.553 1.199 -0.506 1.414 sum 16.011 -7.170 -2.465 17.716 Atomic orbital electron populations 1.69775 1.08030 1.29473 1.49218 1.26048 0.96399 1.02536 0.95683 0.85455 0.79548 0.77119 0.80062 1.18069 1.19842 1.15701 1.19038 0.80943 0.95301 1.50813 0.91752 1.41939 1.06164 1.07443 1.66244 1.20473 0.89988 0.83905 0.82417 1.90528 1.70707 1.32220 1.56327 1.20921 0.89722 0.85576 1.05111 1.45759 1.07528 1.08600 1.73766 1.22018 0.81673 0.93446 0.75235 1.90686 1.55976 1.47190 1.51529 1.21315 0.82800 0.89454 0.99076 0.84640 1.86553 1.15908 1.78700 1.53744 1.22771 1.08393 0.93155 0.98061 1.22953 0.97070 0.94123 1.04087 1.23142 0.92726 1.00507 1.04441 0.90900 0.77259 0.87943 0.87719 0.74614 0.75791 0.87643 0.87337 0.87684 0.88012 0.87583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.87 13.96 21.66 0.30 -53.56 16 2 C -0.01 -0.35 5.50 84.93 0.47 0.12 16 3 Si 0.96 37.65 27.74 68.60 1.90 39.55 16 4 H -0.26 -9.58 7.11 99.48 0.71 -8.88 16 5 H -0.27 -10.70 7.11 99.48 0.71 -9.99 16 6 H -0.23 -7.84 6.52 99.48 0.65 -7.19 16 7 C -0.33 -18.61 10.16 84.04 0.85 -17.75 16 8 H 0.06 4.26 7.39 -2.91 -0.02 4.24 16 9 N -0.58 -26.13 5.09 -306.99 -1.56 -27.69 16 10 C 0.44 18.92 7.85 87.66 0.69 19.61 16 11 O -0.61 -30.71 15.24 -3.05 -0.05 -30.76 16 12 C 0.11 3.63 6.15 85.63 0.53 4.16 16 13 N -0.70 -20.40 5.49 -466.78 -2.56 -22.97 16 14 C 0.49 13.43 7.15 87.65 0.63 14.06 16 15 O -0.57 -19.17 16.32 15.95 0.26 -18.91 16 16 C 0.14 2.82 3.57 29.85 0.11 2.92 16 17 H 0.14 2.47 7.90 -2.38 -0.02 2.45 16 18 O -0.54 -11.67 12.90 -129.99 -1.68 -13.34 16 19 C -0.20 -3.59 5.32 -10.77 -0.06 -3.64 16 20 C -0.15 -2.02 10.15 30.60 0.31 -1.71 16 21 C -0.17 -2.71 10.18 30.62 0.31 -2.40 16 22 H 0.28 14.97 8.31 -92.71 -0.77 14.20 16 23 H 0.39 14.86 5.76 -92.71 -0.53 14.32 16 24 H 0.10 2.99 8.14 -2.39 -0.02 2.97 16 25 H 0.10 2.99 8.14 -2.38 -0.02 2.97 16 26 H 0.42 12.11 7.44 -92.71 -0.69 11.43 16 27 H 0.39 6.80 8.79 -74.05 -0.65 6.15 16 28 H 0.11 1.97 8.11 -2.39 -0.02 1.95 16 29 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.11 1.57 8.05 -2.39 -0.02 1.55 16 Total: -1.00 -71.62 285.97 -0.31 -71.93 By element: Atomic # 1 Polarization: 41.15 SS G_CDS: -0.76 Total: 40.39 kcal Atomic # 6 Polarization: 11.53 SS G_CDS: 3.83 Total: 15.37 kcal Atomic # 7 Polarization: -100.40 SS G_CDS: -3.82 Total: -104.22 kcal Atomic # 8 Polarization: -61.55 SS G_CDS: -1.46 Total: -63.01 kcal Atomic # 14 Polarization: 37.65 SS G_CDS: 1.90 Total: 39.55 kcal Total: -71.62 -0.31 -71.93 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001334408254.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.025 kcal (2) G-P(sol) polarization free energy of solvation -71.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.31 seconds