Wall clock time and date at job start Mon Mar 30 2020 17:58:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.33387 * 125.20287 * 2 1 4 4 C 1.38427 * 114.91991 * 179.75128 * 3 2 1 5 5 C 1.50701 * 122.53601 * 180.22725 * 4 3 2 6 6 S 1.81395 * 109.47475 * 90.00307 * 5 4 3 7 7 C 1.81392 * 103.00315 * 179.97438 * 6 5 4 8 8 C 1.52997 * 109.47224 * 180.02562 * 7 6 5 9 9 C 1.50703 * 109.47406 * 180.02562 * 8 7 6 10 10 H 1.08008 * 119.99763 * 359.97438 * 9 8 7 11 11 C 1.37880 * 120.00442 * 180.02562 * 9 8 7 12 12 N 1.31510 * 119.99695 * 359.97438 * 11 9 8 13 13 Si 1.86793 * 120.00058 * 179.97438 * 11 9 8 14 14 H 1.48508 * 109.47491 * 359.97438 * 13 11 9 15 15 H 1.48496 * 109.47389 * 119.99738 * 13 11 9 16 16 H 1.48499 * 109.47164 * 239.99525 * 13 11 9 17 17 C 1.33381 * 114.92374 * 0.25034 * 4 3 2 18 18 S 1.75886 * 125.20508 * 180.13454 * 2 1 3 19 19 H 1.08999 * 109.46692 * 90.00514 * 1 2 3 20 20 H 1.09004 * 109.46845 * 210.00031 * 1 2 3 21 21 H 1.08991 * 109.47544 * 330.00173 * 1 2 3 22 22 H 1.08002 * 122.54190 * 0.02679 * 3 2 1 23 23 H 1.09004 * 109.47116 * 210.00086 * 5 4 3 24 24 H 1.08997 * 109.47111 * 329.99678 * 5 4 3 25 25 H 1.09008 * 109.47244 * 299.99784 * 7 6 5 26 26 H 1.08997 * 109.47059 * 60.00077 * 7 6 5 27 27 H 1.09002 * 109.47136 * 299.99735 * 8 7 6 28 28 H 1.09002 * 109.47476 * 59.99843 * 8 7 6 29 29 H 0.96998 * 119.99919 * 180.02562 * 12 11 9 30 30 H 1.07994 * 125.20771 * 180.02562 * 17 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2759 1.0899 0.0000 4 6 3.6379 0.8428 0.0054 5 6 4.6622 1.9482 0.0114 6 16 5.0660 2.3894 1.7239 7 6 6.2925 3.7112 1.5265 8 6 6.7422 4.1997 2.9049 9 6 7.7606 5.2983 2.7410 10 1 8.0578 5.6160 1.7524 11 6 8.3139 5.8971 3.8529 12 7 7.9524 5.5099 5.0566 13 14 9.5768 7.2583 3.6496 14 1 9.8099 7.5056 2.2039 15 1 9.0736 8.5001 4.2897 16 1 10.8515 6.8511 4.2934 17 6 3.9751 -0.4477 0.0046 18 16 2.5210 -1.4372 -0.0034 19 1 -0.3633 -0.0001 -1.0277 20 1 -0.3633 -0.8900 0.5139 21 1 -0.3634 0.8899 0.5137 22 1 1.8669 2.0895 0.0004 23 1 5.5642 1.6105 -0.4991 24 1 4.2586 2.8203 -0.5030 25 1 7.1536 3.3290 0.9782 26 1 5.8484 4.5393 0.9742 27 1 5.8813 4.5818 3.4536 28 1 7.1864 3.3714 3.4569 29 1 8.3413 5.9315 5.8388 30 1 4.9862 -0.8271 0.0087 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001339182209.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 17:58:40 Heat of formation + Delta-G solvation = 7.176938 kcal Electronic energy + Delta-G solvation = -12154.698261 eV Core-core repulsion = 9974.023542 eV Total energy + Delta-G solvation = -2180.674719 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 242.049 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.37831 -33.67133 -32.78193 -30.85052 -28.49727 -26.70343 -25.22392 -21.99192 -20.93338 -18.97489 -17.14199 -16.50560 -15.65226 -15.06404 -14.49636 -14.14926 -13.96484 -13.56402 -13.32411 -13.13351 -12.85309 -12.31658 -11.98445 -11.88442 -11.57436 -11.44090 -11.03668 -10.83245 -10.56417 -10.18814 -9.64050 -9.59095 -9.03193 -8.63869 -8.41957 -8.29529 -7.11184 -6.05492 -4.10040 0.89781 1.56640 1.89776 2.01795 2.99746 3.28490 3.29574 3.36309 3.39977 4.42236 4.62958 4.94758 5.10476 5.16460 5.30065 5.32280 5.34262 5.56839 5.63841 5.76376 6.01042 6.05966 6.19747 6.34154 6.45636 6.74600 7.57925 7.66571 7.91118 8.28289 8.95257 9.53841 11.05356 Molecular weight = 242.05amu Principal moments of inertia in cm(-1) A = 0.065687 B = 0.003735 C = 0.003703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 426.161495 B = 7495.695759 C = 7559.044460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.182 4.182 3 C -0.124 4.124 4 C -0.075 4.075 5 C -0.033 4.033 6 S -0.275 6.275 7 C -0.062 4.062 8 C 0.037 3.963 9 C -0.520 4.520 10 H 0.058 0.942 11 C 0.059 3.941 12 N -0.891 5.891 13 Si 0.897 3.103 14 H -0.272 1.272 15 H -0.283 1.283 16 H -0.283 1.283 17 C -0.198 4.198 18 S 0.087 5.913 19 H 0.072 0.928 20 H 0.067 0.933 21 H 0.077 0.923 22 H 0.141 0.859 23 H 0.084 0.916 24 H 0.085 0.915 25 H 0.067 0.933 26 H 0.067 0.933 27 H 0.026 0.974 28 H 0.026 0.974 29 H 0.262 0.738 30 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.275 -11.694 -11.831 20.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.299 4.299 3 C -0.155 4.155 4 C -0.088 4.088 5 C -0.183 4.183 6 S -0.046 6.046 7 C -0.210 4.210 8 C -0.002 4.002 9 C -0.561 4.561 10 H 0.076 0.924 11 C -0.143 4.143 12 N -0.529 5.529 13 Si 0.724 3.276 14 H -0.197 1.197 15 H -0.209 1.209 16 H -0.209 1.209 17 C -0.336 4.336 18 S 0.351 5.649 19 H 0.091 0.909 20 H 0.086 0.914 21 H 0.096 0.904 22 H 0.159 0.841 23 H 0.103 0.897 24 H 0.104 0.896 25 H 0.086 0.914 26 H 0.086 0.914 27 H 0.045 0.955 28 H 0.045 0.955 29 H 0.072 0.928 30 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -12.931 -13.653 -10.723 21.647 hybrid contribution 1.611 2.778 -1.069 3.385 sum -11.320 -10.875 -11.792 19.633 Atomic orbital electron populations 1.20316 0.87833 1.03210 1.02549 1.24385 0.99878 0.95536 1.10071 1.19967 0.92165 0.99573 1.03744 1.18303 0.93868 0.93416 1.03190 1.21927 0.99445 0.98628 0.98329 1.87177 1.57406 1.50788 1.09220 1.23707 0.96348 0.95287 1.05633 1.18906 0.96668 0.96325 0.88252 1.21144 1.23372 1.18756 0.92788 0.92409 1.25018 0.96894 0.97197 0.95195 1.69983 1.43247 1.42096 0.97583 0.86466 0.81159 0.81723 0.78235 1.19696 1.20885 1.20898 1.25402 1.01920 0.95900 1.10411 1.84096 0.97002 1.09819 1.74013 0.90901 0.91392 0.90434 0.84132 0.89727 0.89615 0.91424 0.91406 0.95533 0.95540 0.92837 0.81703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.65 10.38 36.00 0.37 -0.27 16 2 C -0.18 -2.02 6.51 -36.00 -0.23 -2.26 16 3 C -0.12 -1.55 9.85 -41.21 -0.41 -1.96 16 4 C -0.07 -1.01 5.06 -106.25 -0.54 -1.55 16 5 C -0.03 -0.48 6.19 36.01 0.22 -0.26 16 6 S -0.28 -5.23 21.72 -107.50 -2.33 -7.57 16 7 C -0.06 -1.31 5.88 37.16 0.22 -1.09 16 8 C 0.04 0.98 4.98 -27.88 -0.14 0.84 16 9 C -0.52 -14.69 9.11 -34.44 -0.31 -15.01 16 10 H 0.06 1.57 7.74 -52.48 -0.41 1.16 16 11 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 12 N -0.89 -26.84 13.29 55.43 0.74 -26.10 16 13 Si 0.90 21.49 29.54 -169.99 -5.02 16.47 16 14 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 15 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 16 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 17 C -0.20 -2.47 10.98 29.04 0.32 -2.15 16 18 S 0.09 0.95 23.33 -107.50 -2.51 -1.56 16 19 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 20 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 21 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 22 H 0.14 1.63 8.06 -52.49 -0.42 1.20 16 23 H 0.08 1.13 8.12 -51.92 -0.42 0.71 16 24 H 0.09 1.15 8.13 -51.93 -0.42 0.72 16 25 H 0.07 1.37 8.14 -51.92 -0.42 0.95 16 26 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 27 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 29 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 30 H 0.17 1.85 8.06 -52.49 -0.42 1.42 16 LS Contribution 288.99 15.07 4.36 4.36 Total: -1.00 -30.41 288.99 -9.56 -39.97 By element: Atomic # 1 Polarization: 0.74 SS G_CDS: -4.19 Total: -3.45 kcal Atomic # 6 Polarization: -21.52 SS G_CDS: -0.59 Total: -22.12 kcal Atomic # 7 Polarization: -26.84 SS G_CDS: 0.74 Total: -26.10 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Atomic # 16 Polarization: -4.28 SS G_CDS: -4.84 Total: -9.13 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -30.41 -9.56 -39.97 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339182209.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.146 kcal (2) G-P(sol) polarization free energy of solvation -30.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.969 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds